Gene detail

Detail information of MD16G1148200 Annotation

Gene ID	Annotation
MD16G1148200	ubiquitin protein ligase 6

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0750	ubiquitin-protein ligase E3 C [EC:2.3.2.26] HECT protein ubiquitination involved in ubiquitin-dependent protein catabolic process structural constituent of ribosome ubiquitin ligase complex small subunit ribosomal protein S16e large subunit ribosomal protein LP2 large subunit ribosomal protein L27e ubiquitin-protein transferase activity RNA methylation translation

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1148200	mRNA	Chr16	11548497	11561271	-

Sequences

CDS:

MD16G1148200

ATTTTATAAAAAGTCACTGAATTTCTTTCGCAGCCGACGTTTCCATCCTCCAGTAAGTCCAGCCGAGAAAATCCAATAAGAAAATAGCGAGAGAAAATACGCGCACAGTCTCTCCATTTCGCTCCTAATTTTCTCGGTAACCAAACGCAAATTCCTCCCTTTTCCCACGATTACACCCGCCAATCCCCTCTCCTTATCCAAGTTTCTCCGATTCTACTCCCACTCAATCCATCCGATCAAACATTCACAAGCTTTTAAACCAGCCCTCTGAAGCGTTAAACCGAGCAACACAACCAATCCCCGTCGCCTGGGATTGGATTGGAACTGACGGACTCAACGCGGAAGGATGTTCTTCTCGGGCGATTCATCGACTCGGAAGCGAGTTGATTTGGGAGGGCGGAGTACGAAGGAAAGGGACAGGCAGAAGCTTTTGGAGCAGACAAGGTTGGAGCGCAACCGCCGGTTGTGGATACGGCAGCAGAACTTAGCCGCGTTGAAAATCCAGAAATGCTTTAGAGGGAGGAAGGTGGCAGCGGCTGAACATTCTAAGGTGCGTGAGCAGTTCTATGGAAGATATGGGAGGCATTGCCAGAATGTGGACAGATTTAGTTTTGGTCCTGATTCAGAGTTTCTCCGCCAGTTACTTTTCTTCTTTGATGCTCGAAGCGTTGGTGATTTTTCTATCCTTGTGGAGACGTGCCGGTTGCTTCATCAATTTGTCAGAGAGACAGGGGATATTATTAGCCTCGTTGCAGGCATGGATTATTCGTCCAAGCATGCTTTGGTGAAACACAGAGTGAAGCAACTTGCATATATCTGTATGAAGGCTGTTCATCAAAACAGAAATCAGTTGAAGGATCAACTTTTTGCAGCCCCTGAGGAGGCCACCACGTCAACAACTTTACTGTTAGAAGCATTAGTTTTATTGATAGATCCCAAGCTTCCATGGGCTTGTGAGACAGTTGGCTATCTTTTGCAAAGAAAGGCTTTTATCCTGTATAGAGAGATTATTTTAACAGGAAAGGAAAGTATAAAGACTCATAACTACATTGGCAGAGTGTCATCGTTGGAGCGTAGTCTTGCTGTTGTAATTTCTCACATTGGTCAGGAGCCATGTACGTGCCCAAACATCGATCCACATTGGAGTTTTTCATCTCAAATTCTTACAGTTCCATTTGTATGGAAGCTATTTCCCTACTTAGGAGAGGTTTTTGCAAGACGAGGGCTGAGCCAGCATTATATTAATCAGATGTCACTCTGTGTGAAAAATCATGCTGATGTACTTCCGAAAGATGCATCAGTTGAGTTACCCGGTTATGCCTGCCTTATTGGAAATATATTGGAATCTTCCGGGGTCGCTCTGTCTCAGACTGATTGCTCATTTCAAATGGCTTTAGACCTTGCTGGCGTCGCAACATTCTTGTTGGAGGCCCTTCCTTCAATGAAATCATCTAATAGAGAAAGCAAAGAAGATTCTATGGGTGATGATGATATGATTGAAGGAGATGATGCAATGGAAATTTGTTTGAATAATGATTTAGAACGACAGATATGTGATGCCATAGATCTGCGCTTTCTTCTGCAATTAACAAATGTTTTGTTTGGAGGGATTTCACCTTCCAGTGGCTTGGACCACAGACCGGATGATAAAGAGGTGTCAGCTGTTGGTGCGGCTTGTGCTTTTCTACATGTTACTTTAAACACCTTACCTCTGGAGAGAATCATGACTATACTAGCTTATAGAACAGAACTTGTTCCGGTGCTTTGGAATTTTATGAAACGGTGCCATGAAAACCAGAAATGGCAGTCAGTATCTGAGCAGTTGGCATATCTGCTGCCCGGAGATGCACCTGGCTGGCTATTACCTTTGGCTGTATTCTGTCCTGTGTACAAGCACATGCTTACAGTAGTTGATAATGAGGAGTTCTATGAGCAGGAGAAGCCACTATCATTGAAGGATATCAGATACCTAGTTATCATACTCAGACAGGCCCTATGGCAACTTCTTTGGGTGAATCCTACGGCTCCCAGTAATTCTTCGAAACCTGTCACAACCTCCTCTTCTAAGAAGCACCCTGTGGAGTTAATTCAACATAGAGTTAGCATTGTAGCTTCTGAACTCCTCTCCCAGTTGCAAGATTGGAACAATAGACGAGAATTCACATCCCCCAGTGACTTTCATGCTGATGGTGTCAATGAGTTCTTTATTACACAGGCCGTAATAGAAAATACCCGAGCAAATGACATCATGAAGCAAGCTCCCTTCCTGGTACCATTCACAAGCAGAGTTAAAATATTCACTTCACAATTGGCAGCAGCTAGACAAAGACATGAGTCTAATTCTGTATTTACCAGAAACCGATTCAGAATACGGCGGGATCGTATCTTGGAAGATGCTTACGACCAAATGAGTGCGCTGTCTGAAGATGATCTTCGGGGACCGATTCGTGTAACGTTTGTAAATGAATTTGGGGTTGAGGAGGCTGGAATTGATGGCGGTGGGATTTTCAAAGACTTTATGGAGAACATTACTCAGGCAGCCTTTGATGTTCAGTATGGATTGTTTAAGGAAACATCCGATCATTTACTCTACCCTAGTCCTGGTTCAGGAATGATTCACGAACAGCATCTCCGATTCTTTCACTTTCTTGGGATTCTTCTTGCAAAGGCCATGTTCGAGGGGATTCTTGTTGATATACCATTTGCTACGTTTTTTCTGAGCAAATTAAAACAAAAGTACAACTATTTAAATGATTTGCCTTCATTGGACCCAGAGTTGTACCGTCACCTTATTTTCTTGAAGCGTTATAAAGGTGATATATCAGAATTAGAATTGTACTTTGTCATTGTAAATAATGAATATGGAGAGCAAACAGAAGAGGAGCTGCTTCCCGGGGGAAAAAACCTACGTGTCACTAATGAGAATGTCATTACCTTTATTCATCTTGTTGCCAACCATCGTTTGAACTTTCAGATACGTCAACAAAGTTCACATTTCTTAAGGGGGTTTCAGCAGCTTATACCGAAAGATTGGATAGATATGTTTAATGAGCATGAACTTCAGCTTCTGATATCAGGTTCACTTGACAGCTTGGATGTCGATGACCTACGGATGCACACAAACTATGTGGGTGGCTATCATAGTGAGCATTATGTCATTGACATGTTCTGGGAAGTTCTGAAAAGTTTTTCATTGGAAAATCAGAAGAAATTTCTGAAATTTGTGACCGGGTGCTCTCGAGGACCTCTGCTTGGATTCAAACACTTGGAACCATTATTTTGCATACAGAGAGCTGGTGGCAATGGAGCTGAAGGAGCTCTTGACCGATTACCGACTGCAGCCACTTGTATGAATCTCCTAAAGCTTCCACCATATAGAAGTAAGGAGCAACTGGAATCAAAATTGATGTATGCTATAAGCGCAGATGCCGGGTTTGATTTGAGCTGATCGAAAATGTGAATTCTAGTTGTGCACCTAATCCTCTGATCCGTTATTCTGTGGGGCAAACCATCCGCCAGGGGCGGAGACAGTTCACATCATACCCTGTTAATTTGATGTACCTGCTTTTAACCCGAGCTGCGTAATAACCAAAAGGATTTGAAAAAGCCGATGGAGCGAAGCTCAAAACTTGATGGCATGTAGATATTTGTATTTCTGGCAAGCTCCCGATTTGACATGTAAATATGTGGGGGGTGATCTGCCAAAGTTATTACAACAGCTTTTGTTAAGTTTACAGATTACACATACAGATCTTGGCCAGTCGTGAATGGCTTTCCTCACCATCGATAGGCGATTATATAAATAGAAAGTGCTTTTAATTGCTCTTGTTGAACATGATCATTCATCTGCAGAAATAATCAGAGCTGGGCTGTTGCTGCATCCTGCCATGAAATCGTGTTTTGTAAGACGAGGAATGTAAAATTTTCGGAAGTTATTTCAGTAGCACCACTGTGAGTTATGGGCAAAGCTGCGGAATGTCGGAACTGCTCTTAGAGGTGTGCCGTAGTTAAGTTTTCACCTTCAATCTCTTGACGTTATTTTTTTTTCT

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	HECT

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G17205.3	1	UPL6\|ubiquitin protein ligase 6
Arabidopsis thaliana	AT3G17205.1	1	UPL6\|ubiquitin protein ligase 6
Arabidopsis thaliana	AT3G17205.2	0.931	UPL6\|ubiquitin protein ligase 6
Pyrus communis	PCP029531.1	1	-
Rubus occidentalis	Ro04_G26258	1	-
Vitis vinifera	GSVIVT01034942001	1	ubiquitin protein ligase 6
Solanum lycopersicum	Solyc01g057900.2.1	1	ubiquitin protein ligase 6
Populus trichocarpa	Potri.008G101300.1	1	ubiquitin protein ligase 6
Nicotiana benthamiana	Niben101Scf02589g00001.1	1	ubiquitin protein ligase 6 LENGTH=1029
Oryza sativa	LOC_Os05g06690.1	1	"HECT-domain domain containing protein, expressed"
Oryza sativa	LOC_Os03g47949.1	1	"HECT-domain domain containing protein, expressed"

Gene Ontology

GO term	Description	Category
GO:0004842	ubiquitin-protein transferase activity	molecular_function

KEGG

KO	Description	Enzyme
K10589	ubiquitin-protein ligase E3 C	EC:2.3.2.26

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00632.21	HECT	728	1033	1.20E-90

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	5.56614
SRR5252888	dormant buds	no	dormant buds(0 month)	13.7364
SRR5252889	dormant buds	no	dormant buds(0 month)	15.1106
SRR5252886	dormant buds	no	dormant buds(1 months)	11.9751
SRR5252887	dormant buds	no	dormant buds(1 months)	13.0388
SRR5252884	dormant buds	no	dormant buds(2 months)	14.7669
SRR5252882	dormant buds	no	dormant buds(3 months)	14.228
SRR5252883	dormant buds	no	dormant buds(3 months)	12.9199
SRR5252880	dormant buds	no	dormant buds(4 months)	11.7915
SRR5252881	dormant buds	no	dormant buds(4 months)	10.9682
SRR5252878	bud break	no	bud break	10.7935
SRR5252879	bud break	no	bud break	8.62126
SRR3744766	flower	no	mature	10.4218
SRR3744767	flower	no	mature	10.9773
SRR3744768	flower	no	mature	11.3574
SRR6308190	stigmas	no	open flowers	12.9603
SRR6308181	styles	no	open flowers	13.0087
SRR6308188	filaments	no	open flowers	8.53057
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	10.6109
SRR6308192	pollen	no	open flowers	8.83931
SRR6308191	petals	no	open flowers	10.5178
SRR6308194	sepals	no	open flowers	11.9077
SRR6308193	receptacles	no	open flowers	10.0685
SRR6308189	ovaries	no	open flowers	10.2065
SRR3384922	fruit	no	1 week after full bloom	3.52429
SRR3384921	fruit	no	2 week after full bloom	3.7516
SRR3384920	fruit	no	3 week after full bloom	3.37758
SRR3384919	fruit	no	4 week after full bloom	4.30339
SRR3384923	fruit	no	5 week after full bloom	3.60335
SRR3384918	fruit	no	6 week after full bloom	4.77359
SRR3384917	fruit	no	8 week after full bloom	3.95691
SRR3384916	fruit	no	10 week after full bloom	4.25526
SRR3384915	fruit	no	12 week after full bloom	3.40351
SRR3384914	fruit	no	14 week after full bloom	3.94547
SRR3384913	fruit	no	16 week after full bloom	4.64711
SRR3384912	fruit	no	18 week after full bloom	5.00876
SRR3384911	fruit	no	19 week after full bloom	4.90752
SRR3384910	fruit	no	20 week after full bloom	6.22574
SRR768128	whole fruit	no	25 days post anthesis	5.00558
SRR768129	whole fruit	no	35 days post anthesis	3.30329
SRR768130	whole fruit	no	60 days post anthesis	4.45658
SRR768131	whole fruit	no	87 days post anthesis	5.21088
SRR7343308	immature fruit flesh	no	immature	8.38835
SRR7343309	immature fruit flesh	no	immature	9.96815
SRR6320494	ripe fruit flesh	no	mature	9.62805
SRR5405143	ripe fruit peel	no	mature	10.4807
SRR6320572	ripe fruit peel	no	mature	4.93258
SRR7403504	fruit	uninfected	mature	7.43115
SRR7403506	fruit	uninfected	mature	7.63251
SRR7403507	fruit	uninfected	mature	7.4455
SRR7403500	fruit	infected with penicillium expansum	mature	9.5751
SRR7403501	fruit	infected with penicillium expansum	mature	9.59746
SRR7403508	fruit	infected with penicillium expansum	mature	8.56605
SRR7403502	fruit	infected with penicillium expansum	mature	9.79527
SRR7403503	fruit	infected with penicillium expansum	mature	9.54387
SRR7403505	fruit	infected with penicillium expansum	mature	9.55523
SRR1613973	Central seeds	no	20DAPF	5.06153
SRR1613974	Central seeds	no	20DAPF	6.04032
SRR1613975	Central seeds	no	20DAPF	4.68299
SRR1613976	Lateral seeds	no	20DAPF	4.7426
SRR1613977	Lateral seeds	no	20DAPF	4.52285
SRR1613978	Lateral seeds	no	20DAPF	4.99594
SRR3744786	stem	no	mature	15.0078
SRR3744787	stem	no	mature	13.9807
SRR3744772	stem	no	mature	15.0078
SRX765691	seedling shoot apex	no	4-6 week old seedling	7.94588
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	6.67533
SRR1089478	leaf	Virus-free	plantlets	4.77584
SRR1089477	leaf	ASGV-infected	plantlets	6.44653
SRR767660	leaf	uninfected	fully developed	1.48866
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	4.48393
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.3045
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.492983
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	9.60025
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.19596
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.6698
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.94632
SRR6308182	young leaf	no	immature leaves	6.49429
SRR3744769	leaf	no	mature	10.6832
SRR3744770	leaf	no	mature	12.1381
SRR3744771	leaf	no	mature	11.9223
SRR5405145	leaf	no	mature	11.4828
SRR6320561	leaf	no	mature	10.6366