Gene detail

Detail information of MD16G1148600 Annotation

Gene ID	Annotation
MD16G1148600	Glycosyl hydrolase superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1148600	mRNA	Chr16	11666497	11671559	-

Sequences

CDS:

MD16G1148600

TTAACGATAGGCTTTTCCATTTCATATCTAAACGGCACAGTTACTAATTGGATAATTTAATAATGCTCAGTTCGAGCTTAGGCGGTTGATTTCAATCAGAAATGGCGGTAGTGCCTCTGTTCGTCACGGCGACGAAGCTCGCCGGGCTACTAGTGACACTCACAGTCGCCGCCAATGCCTACTCTTATTCACGCTTTTGGAACAAGAATCTCCGCCCGTTCCAGTCTCCGATCGACGATTCCGACGACGAGGACGACGACACTCTCGCTGACTTCAATCTCCACGAAGGGGGAGATGAGTTTTTCTTCGGGTTGGCAACGGCTCCAGCCCATGTTGAGGACAGGCTAGATGATGCTTGGCTCCAGTTTGCAAAAGAAAATCCTTCTGACCAATCAGAGTCACAGGGGAGCCTGCAAACAGCAGATGCTATAATGGGTTCTGCTACTGGTGATGGAGGATCTCAGCCAGTTTCCTTACCAGGAAAAGCTGGGAAAACAGATAAGAAAAGGAAGCCTCTTAAGATAGCTATGGAAGCCATGATTAGAGGGTATGAGAAGTATATTGAAGGAGACGGAGGAGAAGAAGAAGTAGAAACACCTGTCCCAAACGAAGAATCCCATCATAATGTAGCTGCATGGCACAACGTTGTGCACCCAGAAGAGAGGCTAAGGTTTTGGTCTGATCCTGATACAGAACTAAAATTGGCTAAAGATACTGGAATCAGTGTCTTCCGAATGGGAATAGATTGGTCACGAATCATGCCAGAAGAACCACTCAATGGGCTAAAAGAAACTGTCAATTATGCAGCGTTGGAGCGATATAAGTGGATAATCAGCAGGGTCCGTTCATATGGAATGAAGGTGATGTTAACTCTGTTTCATCACTCATTACCACCATGGGCTGGAGAGTATGGAGGTTGGAAAATGGAAAAAACGGTTGATTATTTCATGGACTTTACAAAGCTTGTTGTTGACAGTGTCTCAGATATGATAGACTATTGGGTAACATTTAATGAGCCTCACGTCTTCTGTATGCTTACCTATTGTGCGGGTGCTTGGCCTGGTGGTCATCCTGACATGCTGGAGGCGGCCACTTCTGCTCTACCTACTGGTGTTTTCCAACAGGCTATGCATTGGATGGCCATTGCACACTCAAAGGCCTATGAATATATTCATGAACAAAGGTCTTCATCAAAACCAGTAGTTGGCGTGGCACACCATGTCTCATTTATGCGGCCATATGGTCTCTTTGATGTTGCTGCTGTTTCACTGGCGAACTCCCTGACTATGTACTCATATGTGGATAGTGTTTCTGACAAGCTGGATTTTATAGGCATAAACTACTATGGACAGGAAGTGGTGTGTGGTGCTGGACTGAAGCTAGTAGAGACTGATGAGTATAGTGAATCTGGACGTGGGGTATATCCAGATGGCTTGTACCGTGTGCTTCTTCAGTTCCATGAAAAATATAAACATCTTAATGTACCCTTCATGATTACTGAAAATGGGGTAGCCGATGAGACAGATTTGATCCGTCGGCCATATCTGCTAGAGCATTTGCTTTCTGTTTTTGCAGCCAAGACCAAGGGTGTCCCTGTGCTTGGCTACCTGTTTTGGACTATTTCTGATAACTGGGAGTGGGCAGATGGATATGGTCCCAAGTTTGGACTTGTAGCAGTTGAACGTGCCAATAATCTTGCCCGGATTCCACGTCCTTCTTACCATCTATTTACAAAGGTGGTGACAACAGGTAAAATTACACGTGATGACCGGGCACAAGCTTGGAATGACCTCAATCAAGCTGCTAAAGCAAAAAGAACACGACCATTTTATCGGGAAGTTAATGAGCATGGTTTGATGTATGCAGGAGGCCTTGATGAACCGATACAGCGGCCGTATACTGACAGAGATTGGCGATTTGGACACTACGAGATGGACGGTCTCCAGGACCCCTTAAGTCGCTTCTCAAGATTCATTCTCCGACCTTTCTCCTTCCTCAAAAGGAAACCTAAAAAGAAGAAATCATTTACCAGTAAGGAGAAGGTAACAAGCCTGACCCTGGTGCAATGAATTGAGCATCCTTTGTGATTATCCTTGGGTTTGGCAAGTTCAAGTTGTAATCTCACCAACTTTTCATAATTTGGGTCTTGTATAATGTCTCAAATGAAAAGTGGAGGACTTTGATTACATTAAACAGTATTTGTAAATAAGAGATTTTGCGGTTAGCCCAAGTAGCAAGGGAGGTTTAGTTATTGGGTTGGGATTGTGATAGATTCGAGGTTCGATTCCTTTCAATATAACAAAATTAAAAACCATTGCGGACCTCAGTGATGGTTTCTCATGATGGGCTATTCATCAGGCCCATTGGTTCAGATCCTTGTCACTCTAGATTGGATTGGATTGGATTGGATTGGATTTGCTAATATCCATTTTACAGAAAAATGATGAATACAGATGAAAAATAATGAACACGCATCTTTTTTAGCTTCT

Protein:

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH1

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G06510.1	1	ATSFR2;SFR2\|SENSITIVE TO FREEZING 2
Arabidopsis thaliana	AT3G06510.2	0.961	ATSFR2;SFR2\|SENSITIVE TO FREEZING 2
Prunus persica	Prupe.1G112100.1.p	1	Glycosyl hydrolase superfamily protein
Pyrus communis	PCP029535.1	1	-
Pyrus x bretschneideri	Pbr014997.1	1	-
Rosa multiflora	Rmu_co8494203.1_g000001.1	1	-
Rubus occidentalis	Ro04_G19896	1	-
Fragaria vesca	mrna05024.1	1	Glycosyl hydrolase superfamily protein
Vitis vinifera	GSVIVT01034947001	1	Glycosyl hydrolase superfamily protein
Solanum lycopersicum	Solyc01g058140.2.1	1	Glycosyl hydrolase superfamily protein
Populus trichocarpa	Potri.010G149500.1	1	Glycosyl hydrolase superfamily protein
Nicotiana benthamiana	Niben101Scf03840g00006.1	1	Beta-glucosidase A
Oryza sativa	LOC_Os11g45710.4	1	"Os11bglu36 SFR2 homologue, expressed"

Gene Ontology

GO term	Description	Category
GO:0005975	carbohydrate metabolic process	biological_process
GO:0003824	catalytic activity	molecular_function

KEGG

KO	Description	Enzyme
K21362	galactolipid galactosyltransferase	EC:2.4.1.184

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00232.14	Glyco_hydro_1	196	381	1.40E-33
PF00232.14	Glyco_hydro_1	401	549	3.00E-22

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	63.9122
SRR5252888	dormant buds	no	dormant buds(0 month)	67.4269
SRR5252889	dormant buds	no	dormant buds(0 month)	61.0155
SRR5252886	dormant buds	no	dormant buds(1 months)	65.0118
SRR5252887	dormant buds	no	dormant buds(1 months)	64.0593
SRR5252884	dormant buds	no	dormant buds(2 months)	74.2622
SRR5252882	dormant buds	no	dormant buds(3 months)	61.9973
SRR5252883	dormant buds	no	dormant buds(3 months)	66.7924
SRR5252880	dormant buds	no	dormant buds(4 months)	54.1046
SRR5252881	dormant buds	no	dormant buds(4 months)	47.8954
SRR5252878	bud break	no	bud break	40.2256
SRR5252879	bud break	no	bud break	30.1495
SRR3744766	flower	no	mature	15.1713
SRR3744767	flower	no	mature	15.15
SRR3744768	flower	no	mature	15.5495
SRR6308190	stigmas	no	open flowers	55.0465
SRR6308181	styles	no	open flowers	48.1643
SRR6308188	filaments	no	open flowers	45.7206
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	27.2894
SRR6308192	pollen	no	open flowers	12.3038
SRR6308191	petals	no	open flowers	31.388
SRR6308194	sepals	no	open flowers	48.9541
SRR6308193	receptacles	no	open flowers	40.1456
SRR6308189	ovaries	no	open flowers	44.5823
SRR3384922	fruit	no	1 week after full bloom	45.103
SRR3384921	fruit	no	2 week after full bloom	39.5473
SRR3384920	fruit	no	3 week after full bloom	34.3528
SRR3384919	fruit	no	4 week after full bloom	40.6105
SRR3384923	fruit	no	5 week after full bloom	49.313
SRR3384918	fruit	no	6 week after full bloom	38.892
SRR3384917	fruit	no	8 week after full bloom	35.6515
SRR3384916	fruit	no	10 week after full bloom	31.737
SRR3384915	fruit	no	12 week after full bloom	26.856
SRR3384914	fruit	no	14 week after full bloom	33.8177
SRR3384913	fruit	no	16 week after full bloom	53.9103
SRR3384912	fruit	no	18 week after full bloom	46.2971
SRR3384911	fruit	no	19 week after full bloom	75.7528
SRR3384910	fruit	no	20 week after full bloom	69.8901
SRR768128	whole fruit	no	25 days post anthesis	31.2642
SRR768129	whole fruit	no	35 days post anthesis	24.1198
SRR768130	whole fruit	no	60 days post anthesis	23.1706
SRR768131	whole fruit	no	87 days post anthesis	40.0368
SRR7343308	immature fruit flesh	no	immature	55.4283
SRR7343309	immature fruit flesh	no	immature	57.798
SRR6320494	ripe fruit flesh	no	mature	30.8999
SRR5405143	ripe fruit peel	no	mature	33.463
SRR6320572	ripe fruit peel	no	mature	34.3797
SRR7403504	fruit	uninfected	mature	34.7075
SRR7403506	fruit	uninfected	mature	33.8105
SRR7403507	fruit	uninfected	mature	35.2922
SRR7403500	fruit	infected with penicillium expansum	mature	7.02723
SRR7403501	fruit	infected with penicillium expansum	mature	6.22895
SRR7403508	fruit	infected with penicillium expansum	mature	6.05448
SRR7403502	fruit	infected with penicillium expansum	mature	5.73422
SRR7403503	fruit	infected with penicillium expansum	mature	6.4918
SRR7403505	fruit	infected with penicillium expansum	mature	7.1669
SRR1613973	Central seeds	no	20DAPF	16.3171
SRR1613974	Central seeds	no	20DAPF	18.5802
SRR1613975	Central seeds	no	20DAPF	15.3296
SRR1613976	Lateral seeds	no	20DAPF	17.2331
SRR1613977	Lateral seeds	no	20DAPF	14.9417
SRR1613978	Lateral seeds	no	20DAPF	15.3495
SRR3744786	stem	no	mature	11.4138
SRR3744787	stem	no	mature	11.6575
SRR3744772	stem	no	mature	12.0556
SRX765691	seedling shoot apex	no	4-6 week old seedling	25.3573
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	19.7558
SRR1089478	leaf	Virus-free	plantlets	21.6407
SRR1089477	leaf	ASGV-infected	plantlets	23.2654
SRR767660	leaf	uninfected	fully developed	46.4244
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	18.4903
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	58.0599
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	10.7818
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	35.4681
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	25.5324
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	27.5726
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	40.93
SRR6308182	young leaf	no	immature leaves	30.2269
SRR3744769	leaf	no	mature	21.2003
SRR3744770	leaf	no	mature	21.6056
SRR3744771	leaf	no	mature	21.7604
SRR5405145	leaf	no	mature	44.4231
SRR6320561	leaf	no	mature	41.5568