Gene detail

Detail information of MD16G1172600 Annotation

Gene ID	Annotation
MD16G1172600	DNA binding

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0697	UV excision repair protein RAD23 GTC proteasome binding FACT complex ubiquitin binding damaged DNA binding

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1172600	mRNA	Chr16	14537576	14548542	-

Sequences

CDS:

MD16G1172600

TGAAAATAGCAACAAAATTCTCTACTAACAGTGTTTTAAAGTTTCGCGGCTTCGGCTGTATCCCCAATTTCTTCTTCTTCTTCCCTTTCTTACTTGCAGTGCTGCTGCTCAATTGCTCCCTCACTCCATCTCTCAGAATCTAGACGCGCTCCAATCGGTCTGCAAACTCTCCTCCAGAGGTAACTAAGGAAGTTAGCCATGCCCCCAACAAGAAAATCAAAGAGTGTGAGCAAGCGGTTTTCTTATAATAATGAGGCTTCTTCTAAGCATGGAGAGCATGCTAACACAAGTGGGCAGAAAAAAGTTGTCGGACATGTTAGGGCCTCAATGGAGCAAGGAAGAGCTAAAACATTTTTATGAAGCATATCGTAAATATGGAAAAGATTGGAAGAAGGTGGCTGCTGTAGTACGCCACCGATCTGTAGAAATGGTAGAGGCCCTTTACACAATGAATAAGGCCTATTTATCTCTTCCTGAAGGTGTTGCTTCTGTTATTGGTCTGACAGCAATGATGACTGACCACTACTCTCTACTGGGAGGAAGTGACAGTGAACAAGAAAGCATTGAGGGTGTAGGAACTCCTTGGAAACCTCAAAAGCATGAAAGGGTAAAATTTCAGACTGAGGTCTCAAAAAGATTTGGACATATTCCAGATTCTTCACAATCCCCTCCAATGGCATCAAGTAACGACTGCTTGTCACTGTTGAACAATAGGCGCTCAGGAATTAGGCCTCATGCTGTTAAAAAAAGGACTCCTCGAGTCCCTGTAGCATATTCTAGTGATAAAGATGACAGTAGAAATTATGTTTCACCAGCCAGGCGAGGTTTAAAACCCAGTCTAGACACTAAAAATGATGATGTTGCTAATGAGATAGCATTGGCATTGACTGAGGCCTCACATAGAGGTGATTCTCCATTGGTTTCTTGGAAATCTAAGAGAAAAGCCAAAGGTACACCACCAACTGTTAGGAATGGTGAAATGATGGGTGCTGAATCGGAAATGACTACAACCAGGCTCCGTGCTAGTGAAATGGATGAGGGTGGACATGAATTGAGCTTAGGAAGCACAGAAGCTGACAATGAAGACTTTGACAGAAGTAAAAAGTATGCAGTGGGTACAGAAGGTACTGATACTCTGGACTTCCAACGGAGGGGGAAGAGATACTCTGTAAAGAAGCAAAAGGTTGAAAATAAAAGCAATCATTTTGAAGACATTAAAGAGGCCGGTAGCGGAACAGAGGAAGGACAGAAGCGAGGTACTATCAAGGGAAAACTTGAAACTAAAGTTGCAAAAAGTGCAAGATCCTTTTACAAGGAACAAAGAAACAAAAGTAAATATGCTCTGATTGCAGAAGATGAAAGCACTCCCTTTGATGCACTACAAACTCTGGCAGATCTATCCTTGATGATGCCCGAAACTGCTGATACAGAGTCTTCTGCACATGTCAGGGAAGAAGATAGCTATGTTGCTAACAAGTCTAAAACAAAGGGGATTCACTCAATTCCTGGGGTTGAACACAATGCTTTGAAAACATCTAAACCGGGCAAACTTAAAGAGGGAGGTCACCAGTCTAACACCGGACTGCAAAAAAGAAAGCAATTGTTGCCATTTAAAGTATATAATGACGCAACTCAAACAGACTGTCGTTGGAGCGACAATCAAAGGATTGAGGCTGCAGTTGAGGTGAATAAGTCGATGAATAAAGGTAAACGATCTTCTCATTATATTACACACCCAAAGCAAGGGAAATCGGTGAATCCTCTACAGAATGCATCTTCTTCTACTGATCATGAAAGGGAGGAGAATAATTCAGGATTATCAACTTTAGGAGTACCATCTGCAAACCAGGCCAACTTACCTGCAAGAGATAGTATTAAATTGAAGCTGGACAGGCACAAACCATCAATAGAGAAGGAGTCTACTGAGGGTATTTTAGATGAACAGCCTGATAAACGGGTTCCTTCATTTCGTAACAGAGAAATAAATATTAAGGAAAGACTTTCTAATTGCTTGTCTCGGTATCAAGTGCAAAGATGGTGTGCTTTTGAATGGTTTTATAGTGCAATTGATTACCCATGGTTTGCTAAAAGGGAGTTTGTGGAGTACTTGAATCATGTTGGATTAGGTCATGTTCCAAGATTAACTCGTGTTGAATGGGGTGTAATACGGAGTTCCCTTGGCAGACCACGGAGATTTTCTGAGCAGTTTCTGAAGGAAGAAAAGGAGAAGCTTGATCAGTACCGAGAATCTGTTAGAACGCATTATGCTGAACTTAATGCTGGTACAAGGGAAGGGCTTCCAACTGACTTAGCTCGGCCTTTATCAGTAGGACAGCATGTCATTGCTTTTCATCCCAGGACTAGAGAGATTCACAACGGAATTGTACTAACCGTCGACCATAGTAGATGTCGTGTTCAGTTTGATCAGCCTGAACTAGGTGTTGAACATATTATGGATATTGATTGCATGCCTTTAAATCCAGTGGAGAATTTACCTGCTTCTTTCACAAAGCACAATGTCAATGTCAATGTCAACAAATACATTGAGAACCTAAAGGAGCTCAAGATTAATGAACGCCTTAAAGAAGGAAAGACTGAAGGGTATAAGGTTGCCTCTAGTGACCATGTGGAGAGCACTGTTCCCTGTTATATGCAGCCATCGCCTCATCATATCAACAAATCATCAAAGCAGACAGAGATCCAAGCAAGGGAAGCTGATATACGAGCTATATTTGAGTTGACTCGTGCACTTGACAAAAAGGATGCTGTGGTATCTGAGTTGAGGCACATGAATGATGAGGTGGTGGAAAACCATAGAGATGGAGACAACTTCATCAGGGATTCTGAGTCTTTTAAAAAGGAATATGCTGCAGTGCTCTTACAGTTGAGTCAAGTCAATGATCAGGTTTCTTCTGCTCTTTGTTGCTTAAGACAGCGCAACACATATAGAGGGAGTCCCGCAGTTAGCTTGGTGAAGCCCATGGAAAATATAAGCGACCCTGGTGGCCATTCAAGCCCTTCTGGTTATTCTTGTCATGCCCAAGAATCGGCAGGTCATGTGTTTGATATTGTTGAAAGTTCAAGAGCAAAAGCCCGCAAAATGGTTGATGCAGCTATGCAGGATGGAGGAGATATAGACTTTGTTAGTAATCGGCTTTCTGATGATGCTGGCGTGCTGGGACCTTCTACTACCCCTGCAGATCCAGTTCGGGTTTCTCAAGATCAGCCAACTGCCTGTACATCAAAACCAATGGAAACGAGTTGTTCAGCTGATCCTAAGTCAAATAACGTATCGAAGCGAAATGAAGAAAAAGCCCTTACAGACCTTATTGTAAATTGTGTAGCAGCGTTTTTGATGATTCAGACATGTACAGCGCGACAGTTTCCACCGTCTGAAGTCGCCCAGGTATTAGACGAAGCCGTGACTAGTTTGCAGCCACTTTGTCCGCAGAACCTTTCGGTTTACGGAGAAATACAGAAGTGCATGGGCATTATTAGGAACCAGATACTAGCGTTGGTGCCTACATAGTTCCCCTTCACACCCAAAATGTACGTGTTCTGCATATTTTGTGCATCTTTTTTGGCCCCTCTATATATATATATATCCCCCTCTCAACCATCGCCAGAATCAAATGTGCGTAG

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB-related

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G21430.2	1	ALY3;ATALY3\|ALWAYS EARLY 3;ARABIDOPSIS THALIANA ALWAYS EARLY 3
Prunus persica	Prupe.1G139300.6.p	1	DNA binding
Prunus persica	Prupe.1G139300.1.p	1	DNA binding
Prunus persica	Prupe.1G139300.2.p	0.919	DNA binding
Prunus persica	Prupe.1G139300.5.p	0.919	DNA binding
Prunus persica	Prupe.1G139300.4.p	0.875	DNA binding
Prunus persica	Prupe.1G139300.3.p	0.794	DNA binding
Pyrus communis	PCP004655.1	1	-
Pyrus x bretschneideri	Pbr031037.1	1	-
Rosa multiflora	Rmu_ssc0000097.1_g000002.1	1	-
Fragaria vesca	mrna06793.1	1	DNA binding
Vitis vinifera	GSVIVT01017770001	1	DNA binding
Populus trichocarpa	Potri.008G216600.1	1	DNA binding

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0003682	chromatin binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.27	Myb_DNA-binding	26	61	2.90E-07

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.80214
SRR5252888	dormant buds	no	dormant buds(0 month)	16.4006
SRR5252889	dormant buds	no	dormant buds(0 month)	14.212
SRR5252886	dormant buds	no	dormant buds(1 months)	16.1857
SRR5252887	dormant buds	no	dormant buds(1 months)	14.9648
SRR5252884	dormant buds	no	dormant buds(2 months)	21.068
SRR5252882	dormant buds	no	dormant buds(3 months)	17.174
SRR5252883	dormant buds	no	dormant buds(3 months)	15.595
SRR5252880	dormant buds	no	dormant buds(4 months)	16.8147
SRR5252881	dormant buds	no	dormant buds(4 months)	15.2608
SRR5252878	bud break	no	bud break	16.933
SRR5252879	bud break	no	bud break	14.0057
SRR3744766	flower	no	mature	2.00109
SRR3744767	flower	no	mature	2.33454
SRR3744768	flower	no	mature	2.10557
SRR6308190	stigmas	no	open flowers	1.94165
SRR6308181	styles	no	open flowers	1.86574
SRR6308188	filaments	no	open flowers	3.46797
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	3.08959
SRR6308192	pollen	no	open flowers	4.5179
SRR6308191	petals	no	open flowers	2.22758
SRR6308194	sepals	no	open flowers	2.15846
SRR6308193	receptacles	no	open flowers	2.61436
SRR6308189	ovaries	no	open flowers	1.68529
SRR3384922	fruit	no	1 week after full bloom	0.19605
SRR3384921	fruit	no	2 week after full bloom	0.165054
SRR3384920	fruit	no	3 week after full bloom	0.290666
SRR3384919	fruit	no	4 week after full bloom	0.21099
SRR3384923	fruit	no	5 week after full bloom	0.21889
SRR3384918	fruit	no	6 week after full bloom	0.304588
SRR3384917	fruit	no	8 week after full bloom	0.41043
SRR3384916	fruit	no	10 week after full bloom	0.285633
SRR3384915	fruit	no	12 week after full bloom	0.180244
SRR3384914	fruit	no	14 week after full bloom	0.415177
SRR3384913	fruit	no	16 week after full bloom	0.360322
SRR3384912	fruit	no	18 week after full bloom	0.241531
SRR3384911	fruit	no	19 week after full bloom	0.370651
SRR3384910	fruit	no	20 week after full bloom	0.671109
SRR768128	whole fruit	no	25 days post anthesis	2.26059
SRR768129	whole fruit	no	35 days post anthesis	0.404122
SRR768130	whole fruit	no	60 days post anthesis	1.25831
SRR768131	whole fruit	no	87 days post anthesis	2.00356
SRR7343308	immature fruit flesh	no	immature	1.92845
SRR7343309	immature fruit flesh	no	immature	2.05117
SRR6320494	ripe fruit flesh	no	mature	2.35143
SRR5405143	ripe fruit peel	no	mature	1.93101
SRR6320572	ripe fruit peel	no	mature	1.4053
SRR7403504	fruit	uninfected	mature	1.17537
SRR7403506	fruit	uninfected	mature	1.10081
SRR7403507	fruit	uninfected	mature	1.42861
SRR7403500	fruit	infected with penicillium expansum	mature	1.44061
SRR7403501	fruit	infected with penicillium expansum	mature	1.67309
SRR7403508	fruit	infected with penicillium expansum	mature	1.60816
SRR7403502	fruit	infected with penicillium expansum	mature	1.32105
SRR7403503	fruit	infected with penicillium expansum	mature	1.18619
SRR7403505	fruit	infected with penicillium expansum	mature	1.43032
SRR1613973	Central seeds	no	20DAPF	1.37111
SRR1613974	Central seeds	no	20DAPF	1.86154
SRR1613975	Central seeds	no	20DAPF	1.29107
SRR1613976	Lateral seeds	no	20DAPF	1.35484
SRR1613977	Lateral seeds	no	20DAPF	0.944013
SRR1613978	Lateral seeds	no	20DAPF	1.46797
SRR3744786	stem	no	mature	1.88043
SRR3744787	stem	no	mature	2.11354
SRR3744772	stem	no	mature	2.75219
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.53759
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.23973
SRR1089478	leaf	Virus-free	plantlets	1.93461
SRR1089477	leaf	ASGV-infected	plantlets	2.47934
SRR767660	leaf	uninfected	fully developed	1.15255
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.03174
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.3967
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	3.2199
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.612863
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.36254
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.707411
SRR6308182	young leaf	no	immature leaves	2.75897
SRR3744769	leaf	no	mature	2.48336
SRR3744770	leaf	no	mature	2.78255
SRR3744771	leaf	no	mature	2.88175
SRR5405145	leaf	no	mature	3.13648
SRR6320561	leaf	no	mature	1.77004