Gene detail

Detail information of MD16G1172900 Annotation

Gene ID	Annotation
MD16G1172900	GTP1/OBG family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0200	chloroplast stroma isopentenyl diphosphate biosynthetic process thylakoid membrane organization chloroplast thylakoid membrane signal recognition particle rRNA processing carotenoid biosynthetic process chloroplast envelope signal sequence binding signal recognition particle chloroplast relocation SRP-dependent cotranslational protein targeting to membrane chlorophyll biosynthetic process protein import into chloroplast thylakoid membrane photosystem II stabilization 7S RNA binding transcription from plastid promoter response to cold defense response to bacterium chloroplast inner membrane chloroplast thylakoid lumen mRNA binding defense response ribosome salicylic acid biosynthetic process photosystem II assembly regulation of protein dephosphorylation pyrophosphate-dependent phosphofructokinase complex stomatal complex morphogenesis photosynthetic electron transport in photosystem I

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1172900	mRNA	Chr16	14595758	14600786	-

Sequences

CDS:

MD16G1172900

GAATAAAAGCGTATGAACAAAACGCTGCGTTTCGAAGACGTAATCCAGAACGGGATACGTGGCATGCCAACACACCAGGCTGTTTCCAGTTGAGCTGAACAAAATCAGGACTGAGGAGTTTCGTTTCAGTTTGCCGCGCCTGAAAATGGCGACCATATCCATAAGCTTCTGCCCGAGCGCCATGGCTCGCCCGAGGGTCCCACAGACTCGCAAGCCTCCGAATAAGAAGCAGGTAACTCCGAGGCCTAACCCTAACCCTAACGTTAGGCTGAAGGGTCGAACCGGCGCGAAGCAGTTGTCCTCAGTCGGCGTCGAGGCCACCACCTACACTCGCCTGCCTCCCAGAGAGGATTTCTCTCTCCCGTCTCTCGATGCGGCGTCGTTGGAGTTCTCGTCTGAGGTGAAGCTCTCTGAGTCAAATGTCGCATTGGTGGTTGAGAAGGAGATTGATTATTTAAGCAGCGACGAAGAGGAGGAGGAAGAAAGTGGCACGGATAATAAGTTAGGGATGAATTCTGGGAAATTTGAGGTCTTTGATGGGAATTACGATTCTGAACTGGATGAGGAGGAGGAGGAGGAGGATGACAGTGATGGTGAAATTGACGACGAACTGGAAAATGTTTATCAAAACGACGACGGTGAGTTCCCAGGGTTTAAGGAGGGCAAAGCTGTGAATTTCTCCGGTAATGAGAGTGAATTGGAGGAAGTGGAAGTGAAGGAGAAGGGAGTGCCAGCGGTAATGCGGTGTTTCGACCGCGCCAAAATCTTTGCCAAGGCAGGGGACGGAGGGAACGGCGTGGTTGCAATGCGGCGGGAAAAGTTCGTGCCTTTGGGGGGACCTTCAGGCGGAGACGGAGGGCGAGGTGGGAATGTGTATATGGAGGTGGATGGGTCGATGAATTCACTTCTGCCGTTTCGGAACAGCGTGCATTTTCGGGCAGGGAGAGGTGATCATGGAAGAGGGCAGTCTCAGAATGGGGCTAAGGGAGAGGACGTAGTGATTAAGGTGGCGCCCGGGACTGTTGTCCGAGAGGCGGGGAAGGATGAGGTGCTTCTGGAGTTGTTGCATCCGGGCCAGCGTGCATTGTTGTTGCCTGGAGGGAGAGGCGGGAGAGGAAACGCTTCGTTTAAATCCGGGACAAATAAGGTCCCCAGGATTGCTGAGAATGGTGCAGAGGGTCCCGAGATGTGGTTGGAGCTGGAACTAAAGCTGGTTGCAGATATTGGAATAGTGGGCGCCCCAAATGCAGGGAAAAGCACACTTTTGAGTGTGATAAGTGCTGCTCAGCCAACAATAGCAAATTACCCCTTCACAACTTTACTTCCTAATCTGGGTGTGGTTTCGTTTGACTATGATTCTACAATGGTAGTAGCAGATCTGCCAGGTTTACTTGAAGGAGCACACCGCGGTTTCGGTTTGGGCCATGAGTTCCTACGGCACACTGAGAGGTGTTCTGCCCTGATACATGTCGTAGATGGCTCATCACAACAGCCAGAATTTGAGTTTGATGCAGTACGTCTGGAGTTGGAACTGTTTAGCCCTGAAATTGCTGAAAAGCCTTATGTAGTTGCGTTTAACAAAATGGACCTTCCAGATGCATATGAAAACTGGTCATCATTCAAAGAAAATTTAGAATCTCGTGGGATTCGTGTTTTTTGCATGAGTGCAGTGAAAAGAGAGGGTACTCATGAAGTGAGCTGTGCTGCTTATGAGCTTCTACGAGAAAATAAAGTGGCCGAGGAGGAGTTCCCAGACCCGGTCAATTTGAATCATGTAGCCGAGATGGTGCGTAAGCAGCAAACTGCATCTATTAATGAGTTTGAGATCACTCATGACAGCAGTAGCAATACTTGGCATGTTGTGGGATCTGGGTTGCAACGCTTTGTTCAAATGACGAATTGGAGATATGTGGATTCTGGGAGAAGGTTCCAGCATGTTCTGGATGCTTGTGGCGTGAACAAATCTCTTACAAAACTTGGTGTGAAAGAAGGCGACACGGTGATTGTTGGAGATATGGAAATGGTATGGCACGATGCTGCAGATAATTCCAGTTTTTCAAGTTTTAGGAAAGGATCTACAGAAACAACCAAGTGGCCTCAATGGAAGTGAGCTCGTGGTCTCGTGTGTTATTTCACTGCTAACCAATAGAAATAGAAAGGTATCAGCTCTTGCAATTTGTTTCTCTTCTCCATATACGATCTTGACACAACTCATGAAATTCAGTAACATCTGTTGAAAGAATGAAACAGGCTTTGATGTATTTATAGAAAATTTTAGTTATCCTTTCATTTCTGGTAATATTCACAC

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G18570.1	1	ATOBGC;ATOBGL;CPSAR1;EMB269;EMB3138\|OBG-like protein;chloroplastic SAR1;EMBRYO DEFECTIVE 269;EMBRYO DEFECTIVE 3138
Prunus persica	Prupe.1G139700.8.p	1	GTP1/OBG family protein
Prunus persica	Prupe.1G139700.4.p	1	GTP1/OBG family protein
Prunus persica	Prupe.1G139700.7.p	1	GTP1/OBG family protein
Prunus persica	Prupe.1G139700.1.p	0.973	GTP1/OBG family protein
Prunus persica	Prupe.1G139700.3.p	0.973	GTP1/OBG family protein
Prunus persica	Prupe.1G139700.2.p	0.973	GTP1/OBG family protein
Prunus persica	Prupe.1G139700.5.p	0.973	GTP1/OBG family protein
Prunus persica	Prupe.1G139700.6.p	0.973	GTP1/OBG family protein
Pyrus communis	PCP024781.1	1	-
Pyrus x bretschneideri	Pbr031040.1	1	-
Pyrus x bretschneideri	Pbr011223.1	0.647	-
Rosa multiflora	Rmu_sc0022469.1_g000001.1	1	-
Rubus occidentalis	Ro04_G06408	1	-
Fragaria vesca	mrna06788.1	1	GTP1/OBG family protein
Vitis vinifera	GSVIVT01017775001	1	GTP1/OBG family protein
Solanum lycopersicum	Solyc01g067530.2.1	1	GTP1/OBG family protein
Populus trichocarpa	Potri.010G022400.1	1	GTP1/OBG family protein
Nicotiana benthamiana	Niben101Scf00082g08020.1	1	GTPase Obg
Oryza sativa	LOC_Os07g47300.1	1	"spo0B-associated GTP-binding protein, putative, expressed"
Zea mays	GRMZM2G077632_P01	1	GTP1/OBG family protein

Gene Ontology

GO term	Description	Category
GO:0000287	magnesium ion binding	molecular_function
GO:0005525	GTP binding	molecular_function
GO:0003924	GTPase activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01018.18	GTP1_OBG	202	356	5.00E-52
PF09269.7	DUF1967	559	628	5.60E-19

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	48.9915
SRR5252888	dormant buds	no	dormant buds(0 month)	2.21987
SRR5252889	dormant buds	no	dormant buds(0 month)	2.65324
SRR5252886	dormant buds	no	dormant buds(1 months)	4.02844
SRR5252887	dormant buds	no	dormant buds(1 months)	2.75915
SRR5252884	dormant buds	no	dormant buds(2 months)	2.58304
SRR5252882	dormant buds	no	dormant buds(3 months)	5.94325
SRR5252883	dormant buds	no	dormant buds(3 months)	1.07936
SRR5252880	dormant buds	no	dormant buds(4 months)	4.48658
SRR5252881	dormant buds	no	dormant buds(4 months)	4.85331
SRR5252878	bud break	no	bud break	6.51379
SRR5252879	bud break	no	bud break	8.14697
SRR3744766	flower	no	mature	10.4835
SRR3744767	flower	no	mature	10.296
SRR3744768	flower	no	mature	10.4663
SRR6308190	stigmas	no	open flowers	9.85655
SRR6308181	styles	no	open flowers	10.4748
SRR6308188	filaments	no	open flowers	6.59657
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	4.05693
SRR6308192	pollen	no	open flowers	1.38182
SRR6308191	petals	no	open flowers	6.98791
SRR6308194	sepals	no	open flowers	16.213
SRR6308193	receptacles	no	open flowers	7.84174
SRR6308189	ovaries	no	open flowers	11.1459
SRR3384922	fruit	no	1 week after full bloom	6.88319
SRR3384921	fruit	no	2 week after full bloom	5.94506
SRR3384920	fruit	no	3 week after full bloom	6.73036
SRR3384919	fruit	no	4 week after full bloom	6.43768
SRR3384923	fruit	no	5 week after full bloom	6.30137
SRR3384918	fruit	no	6 week after full bloom	6.54929
SRR3384917	fruit	no	8 week after full bloom	7.3916
SRR3384916	fruit	no	10 week after full bloom	10.1946
SRR3384915	fruit	no	12 week after full bloom	8.66856
SRR3384914	fruit	no	14 week after full bloom	11.162
SRR3384913	fruit	no	16 week after full bloom	9.90235
SRR3384912	fruit	no	18 week after full bloom	13.3263
SRR3384911	fruit	no	19 week after full bloom	9.21634
SRR3384910	fruit	no	20 week after full bloom	15.7686
SRR768128	whole fruit	no	25 days post anthesis	7.86653
SRR768129	whole fruit	no	35 days post anthesis	7.41127
SRR768130	whole fruit	no	60 days post anthesis	7.51873
SRR768131	whole fruit	no	87 days post anthesis	8.87634
SRR7343308	immature fruit flesh	no	immature	5.89626
SRR7343309	immature fruit flesh	no	immature	3.36081
SRR6320494	ripe fruit flesh	no	mature	17.9904
SRR5405143	ripe fruit peel	no	mature	9.97272
SRR6320572	ripe fruit peel	no	mature	21.2944
SRR7403504	fruit	uninfected	mature	13.4593
SRR7403506	fruit	uninfected	mature	12.0401
SRR7403507	fruit	uninfected	mature	13.5
SRR7403500	fruit	infected with penicillium expansum	mature	0.563548
SRR7403501	fruit	infected with penicillium expansum	mature	0.760266
SRR7403508	fruit	infected with penicillium expansum	mature	1.04133
SRR7403502	fruit	infected with penicillium expansum	mature	0.805101
SRR7403503	fruit	infected with penicillium expansum	mature	0.615265
SRR7403505	fruit	infected with penicillium expansum	mature	1.19118
SRR1613973	Central seeds	no	20DAPF	3.58469
SRR1613974	Central seeds	no	20DAPF	3.54756
SRR1613975	Central seeds	no	20DAPF	4.28895
SRR1613976	Lateral seeds	no	20DAPF	3.04599
SRR1613977	Lateral seeds	no	20DAPF	3.61344
SRR1613978	Lateral seeds	no	20DAPF	3.43999
SRR3744786	stem	no	mature	6.8752
SRR3744787	stem	no	mature	6.50935
SRR3744772	stem	no	mature	7.07093
SRX765691	seedling shoot apex	no	4-6 week old seedling	7.83287
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	6.87471
SRR1089478	leaf	Virus-free	plantlets	14.2938
SRR1089477	leaf	ASGV-infected	plantlets	14.4991
SRR767660	leaf	uninfected	fully developed	44.3483
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	63.5045
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	77.2314
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	10.8081
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	7.00052
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	13.9958
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	17.027
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	17.3351
SRR6308182	young leaf	no	immature leaves	9.24819
SRR3744769	leaf	no	mature	17.6534
SRR3744770	leaf	no	mature	18.342
SRR3744771	leaf	no	mature	19.1828
SRR5405145	leaf	no	mature	22.9674
SRR6320561	leaf	no	mature	40.9657