Gene detail

Detail information of MD16G1193000 Annotation

Gene ID	Annotation
MD16G1193000	with no lysine (K) kinase 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1193000	mRNA	Chr16	17128707	17132273	+

Sequences

CDS:

MD16G1193000

TCTTCTTCTCCTCTCTCTCTCTCTCTATATATATGTATATGTATATGTATATGTATACCTGTGACTGTGTATTGATTGAGATAACAAGAAACATTTGATATGCATGGTGAGAAGAAGTAATTTAACATAGAGAAATTAATAGCTAAAAGTAGAAAAAAAGGAATGAATAGTGTTACTGCTTCTGAAGAGGATTTCTCTGAGTTTGTAGAGGTTGATCCTACTGGAAGATATGGAAGATACAATGAAGTTCTTGGCAAAGGAGCTTCAAAAACAGTTTATAGGGCCTTTGATGAGTATGAAGGGATTGAAGTGGCATGGAATCAAGTAAAGCTTTATGATTTTCAGAGAAACCCTGAGGATCTTGAGAGGCTATACTGCGAAATTCATCTGCTCAAAACCTTGAAACACAGCAATATCATGAAATTTTACTCTTCCTGGGTTGATACTGCCAATAGAAACATTAACTTTGTTACTGAGATGTTTACTTCTGGTACTCTCAGACAGTATAGGTTAAAACACAAGAGAGTTAACATAAGAGCAGTGAAGCATTGGTGTAAGCAGATTTTGAAAGGGCTTCTCTATCTTCACAGCCATGACCCTCCTGTGATTCACAGAGATCTTAAGTGTGACAACATTTTCATCAATGGGAACCAAGGTGAGGTCAAGATTGGTGATCTTGGCCTCGCTGCTGTCCTCCGTAAATCCCACGCTGATCGTTGTGTTGGAACACCGGAGTTCATGGCTCCAGAGGTTTACGAAGAGGAATACAATGAGTTAGTTGACATTTATTCTCTTGGGATGTGCATCTTGGAGATGGTTACCTTTGAATATCCATACAGTGAATGCACTCATCCTGCTCAAATCTATAAGAAAGTTATCACTGGGAAAAAACCAGAAGCCCTATTCAAAGTAAAGGATCCTGAGGTGCAGCGTTTTGTTGAGAAATGCTTAGTGACCGTGTCTCGTAGGCTTTCTGCTAGGGAGCTTTTGAGAGACCCTTTTCTCCAGGTTGATGAGTACGGATACGATTTAAGGCCAATAGAGTATCAAGGGGATATGTATGTAATAGGGCCTCTCTTAAGGCAACCTCACTCTGCACTTCACCAAAGTAACAGCTCTTTCAGCAACGGGTATGGAAATTATCTTGGTTACGAAACTGAAAATGATTTGGATTACAATCCGGTTGATTACAGATTGAGCGAAATTGATCTCTTAGCTTGTCAAGAGGACGAGCATTTGGGAGATGTTGACCTCACAATCAAAGGGAGGCGGAGAGAAGACGATGGCATCTTTTTAAGGCTCAGAATTGCAGATAATGAAGGCCGCATCCGAAACATCTACTTCCCTTTTGATACTGAGAATGACACGGCATTCAGTGTTGCTAGAGAGATGGTTTCTGAGCTTGATATCACATACCAAGATGTCACAAAAATAGCAGAGATGATTGATGGTGAAATTGCTAGCTTGGTACCGGAATGGATTGGGGGACGTGGCATGGAAGAAATTCCCCATTGCAGTAATGCAAGTTTTTGCCAAAATTGTGCTTCATATGGTTCCATTTTGGATTATGCATCATCAGATATTCCAGGCGTCAATCACCTCCAAGTTCTTCAGTGCTCAAAACACGCATCAGCTGCTGTCCATGGACGTTTCGAAGAAATCACATACCAAGTTGAAGGCTCAGAGCAAAGTCTTACAGAAGGTGCACCTAGAACATCAAACCATTCTGATGGCTTGCACTATGCCGATATCTGGGCTCAAAGAGAAGGACCGGAATTAAGCTCACAAGGTTCAGGGGATTCAAGAGACATCCAATGCGATGAAAATCATGAAACATTGGATGCAACAAACTTTGGAAAGGAAGAGAGAATCATAGCCATGGACAATCAGAGCAGTTCGAAATCAAGAAATTCTATCTCAGAGAAACTTTCAGCCACTAATGATCCGTTAGATGATTATGAGAATGAGCTTCGTCAAGAACTAAGATGGCTCAAAGCAACGTATCAAATGCAGTTGAGGGAGATTAGGGATCAACAGCTTGGAGCTAAACCGAAAGCTTCAAGCCTAAGTCCAAATTCAGACCACTCAGAGCACAGGGAAACAAATGGAGCTTCAATGTCCTTGGCATCGCCCCAGCGGACCAAGGAAAACAAAAAACCTTCCTTGAAACCGTTTTGCTCCGCGAAGCATTTTACATATTTTCCAGTGGATGCCGAAAAGAAACATTTAGCAAACCCTGGTGCTCAAAATCATGAGGCATTTGATGGGGCTTATAGTCCTGAACAAATCGTCACTGCAAAGAGTTTCTACGCTAGTGCATTGCTTCCGCACTCTCTTCACCGTGCAACTTCTCTACCGGTTGATGCTATAGACGTTTAAGCCCTGCCAACTTCTCTAATTCTGTCACCAGGTTCACACCACAACCTCAAATAATACCAGCAGCTGTCTCTTTTCACCGATATGAAAAAACGCATTGTGATTGATATTATTTGTACAAGCAGAGACGTAATTTACAGCTTGTAGGTTTTGTTCTCAGATGGAAACAATTCTCAGATAAAAAAAAAAGTTGAATTTATGTACGTTACTCTCTAACATGAAAGTAACAAAGCTAGATTCCATGAATTTCTGTCTCATGTCTCTCAGAAGGAAGGAGATAAGAGTTAAAGGAGGAGGATTCTGTGATTTATGATGACTGCAGATGGCAGTGCATCAGTGATGGTGTGTTATAATGACTTGCCAGCCAAAATTATTCTTTCCATGATGT

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:4.1.5.1

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G013100.1.p	1	with no lysine (K) kinase 1
Pyrus communis	PCP012302.1	1	-
Pyrus x bretschneideri	Pbr008117.2	1	-
Pyrus x bretschneideri	Pbr008115.1	1	-
Rubus occidentalis	Ro04_G21145	1	-
Fragaria vesca	mrna09872.1	1	with no lysine (K) kinase 1
Vitis vinifera	GSVIVT01017968001	1	with no lysine (K) kinase 1
Solanum lycopersicum	Solyc09g076000.2.1	1	with no lysine (K) kinase 1
Populus trichocarpa	Potri.010G087900.1	1	with no lysine (K) kinase 1
Nicotiana benthamiana	Niben101Scf00058g09016.1	1	Serine/threonine-protein kinase 3/4

Gene Ontology

GO term	Description	Category
GO:0004674	protein serine/threonine kinase activity	molecular_function
GO:0004713	protein tyrosine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006468	protein phosphorylation	biological_process

KEGG

KO	Description	Enzyme
K08867	WNK lysine deficient protein kinase	EC:2.7.11.1

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.21	Pkinase	27	281	9.00E-51

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.03989
SRR5252888	dormant buds	no	dormant buds(0 month)	2.86451
SRR5252889	dormant buds	no	dormant buds(0 month)	2.78207
SRR5252886	dormant buds	no	dormant buds(1 months)	3.30799
SRR5252887	dormant buds	no	dormant buds(1 months)	3.20323
SRR5252884	dormant buds	no	dormant buds(2 months)	3.05686
SRR5252882	dormant buds	no	dormant buds(3 months)	3.31614
SRR5252883	dormant buds	no	dormant buds(3 months)	2.55672
SRR5252880	dormant buds	no	dormant buds(4 months)	2.1231
SRR5252881	dormant buds	no	dormant buds(4 months)	2.14862
SRR5252878	bud break	no	bud break	2.55004
SRR5252879	bud break	no	bud break	2.79323
SRR3744766	flower	no	mature	7.21214
SRR3744767	flower	no	mature	7.14888
SRR3744768	flower	no	mature	7.69607
SRR6308190	stigmas	no	open flowers	3.35467
SRR6308181	styles	no	open flowers	11.5983
SRR6308188	filaments	no	open flowers	5.29786
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.601149
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	6.24933
SRR6308194	sepals	no	open flowers	2.14362
SRR6308193	receptacles	no	open flowers	2.0517
SRR6308189	ovaries	no	open flowers	9.17514
SRR3384922	fruit	no	1 week after full bloom	0.146426
SRR3384921	fruit	no	2 week after full bloom	0.158497
SRR3384920	fruit	no	3 week after full bloom	0.0279119
SRR3384919	fruit	no	4 week after full bloom	0.0773595
SRR3384923	fruit	no	5 week after full bloom	0.0735683
SRR3384918	fruit	no	6 week after full bloom	0.0818966
SRR3384917	fruit	no	8 week after full bloom	0.0788251
SRR3384916	fruit	no	10 week after full bloom	0.0512002
SRR3384915	fruit	no	12 week after full bloom	0.0302897
SRR3384914	fruit	no	14 week after full bloom	0.17626
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0.0324711
SRR3384911	fruit	no	19 week after full bloom	0.0311436
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.317849
SRR768129	whole fruit	no	35 days post anthesis	0.193914
SRR768130	whole fruit	no	60 days post anthesis	0.065023
SRR768131	whole fruit	no	87 days post anthesis	0.0489434
SRR7343308	immature fruit flesh	no	immature	0.172881
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0.0172006
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.578712
SRR1613974	Central seeds	no	20DAPF	0.45783
SRR1613975	Central seeds	no	20DAPF	0.318966
SRR1613976	Lateral seeds	no	20DAPF	0.709735
SRR1613977	Lateral seeds	no	20DAPF	0.499125
SRR1613978	Lateral seeds	no	20DAPF	0.473754
SRR3744786	stem	no	mature	0.186823
SRR3744787	stem	no	mature	0.224323
SRR3744772	stem	no	mature	0.263224
SRX765691	seedling shoot apex	no	4-6 week old seedling	1.49667
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	1.55882
SRR1089478	leaf	Virus-free	plantlets	2.20272
SRR1089477	leaf	ASGV-infected	plantlets	3.02295
SRR767660	leaf	uninfected	fully developed	2.9232
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.45451
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	7.91875
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.28914
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	5.74323
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.9729
SRR6308182	young leaf	no	immature leaves	1.61586
SRR3744769	leaf	no	mature	0.778622
SRR3744770	leaf	no	mature	0.716419
SRR3744771	leaf	no	mature	1.22603
SRR5405145	leaf	no	mature	1.60565
SRR6320561	leaf	no	mature	0.816388