Gene detail

Detail information of MD16G1193500 Annotation

Gene ID	Annotation
MD16G1193500	imidazoleglycerol-phosphate dehydratase

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1193500	mRNA	Chr16	17174436	17177048	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G14910.1	1	HISN5B\|HISTIDINE BIOSYNTHESIS 5B
Arabidopsis thaliana	AT4G14910.3	0.924	HISN5B\|HISTIDINE BIOSYNTHESIS 5B
Arabidopsis thaliana	AT4G14910.2	0.912	HISN5B\|HISTIDINE BIOSYNTHESIS 5B
Prunus persica	Prupe.1G013300.1.p	1	imidazoleglycerol-phosphate dehydratase
Pyrus communis	PCP023741.1	1	-
Pyrus x bretschneideri	Pbr011834.1	1	-
Rosa multiflora	Rmu_sc0001145.1_g000009.1	1	-
Rubus occidentalis	Ro04_G21148	1	-
Fragaria vesca	mrna09861.1	1	HISTIDINE BIOSYNTHESIS 5B
Vitis vinifera	GSVIVT01017973001	1	HISTIDINE BIOSYNTHESIS 5B
Solanum lycopersicum	Solyc09g076020.2.1	1	imidazoleglycerol-phosphate dehydratase
Populus trichocarpa	Potri.010G087600.1	1	HISTIDINE BIOSYNTHESIS 5B
Nicotiana benthamiana	Niben101Scf05419g00007.1	1	imidazoleglycerol-phosphate dehydratase LENGTH=270
Oryza sativa	LOC_Os04g52710.1	1	"imidazoleglycerol-phosphate dehydratase, putative, expressed"
Zea mays	GRMZM2G094255_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0000105	histidine biosynthetic process	biological_process
GO:0004424	imidazoleglycerol-phosphate dehydratase activity	molecular_function

KEGG

KO	Description	Enzyme
K01693	imidazoleglycerol-phosphate dehydratase	EC:4.2.1.19

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	16.8946
SRR5252888	dormant buds	no	dormant buds(0 month)	5.10528
SRR5252889	dormant buds	no	dormant buds(0 month)	5.19732
SRR5252886	dormant buds	no	dormant buds(1 months)	4.71654
SRR5252887	dormant buds	no	dormant buds(1 months)	5.01276
SRR5252884	dormant buds	no	dormant buds(2 months)	3.00202
SRR5252882	dormant buds	no	dormant buds(3 months)	4.68356
SRR5252883	dormant buds	no	dormant buds(3 months)	6.19715
SRR5252880	dormant buds	no	dormant buds(4 months)	5.50891
SRR5252881	dormant buds	no	dormant buds(4 months)	3.98379
SRR5252878	bud break	no	bud break	5.15449
SRR5252879	bud break	no	bud break	3.5954
SRR3744766	flower	no	mature	5.05598
SRR3744767	flower	no	mature	4.43419
SRR3744768	flower	no	mature	4.63797
SRR6308190	stigmas	no	open flowers	9.34852
SRR6308181	styles	no	open flowers	11.3069
SRR6308188	filaments	no	open flowers	12.9389
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	7.35833
SRR6308192	pollen	no	open flowers	21.0016
SRR6308191	petals	no	open flowers	9.0049
SRR6308194	sepals	no	open flowers	8.30638
SRR6308193	receptacles	no	open flowers	13.9205
SRR6308189	ovaries	no	open flowers	12.7653
SRR3384922	fruit	no	1 week after full bloom	19.8896
SRR3384921	fruit	no	2 week after full bloom	20.1731
SRR3384920	fruit	no	3 week after full bloom	20.2257
SRR3384919	fruit	no	4 week after full bloom	21.1677
SRR3384923	fruit	no	5 week after full bloom	21.4418
SRR3384918	fruit	no	6 week after full bloom	19.9274
SRR3384917	fruit	no	8 week after full bloom	20.9716
SRR3384916	fruit	no	10 week after full bloom	23.1367
SRR3384915	fruit	no	12 week after full bloom	24.2164
SRR3384914	fruit	no	14 week after full bloom	22.2297
SRR3384913	fruit	no	16 week after full bloom	19.1514
SRR3384912	fruit	no	18 week after full bloom	22.9216
SRR3384911	fruit	no	19 week after full bloom	30.1454
SRR3384910	fruit	no	20 week after full bloom	20.2125
SRR768128	whole fruit	no	25 days post anthesis	15.8006
SRR768129	whole fruit	no	35 days post anthesis	22.2056
SRR768130	whole fruit	no	60 days post anthesis	16.4504
SRR768131	whole fruit	no	87 days post anthesis	9.64519
SRR7343308	immature fruit flesh	no	immature	13.4268
SRR7343309	immature fruit flesh	no	immature	14.3308
SRR6320494	ripe fruit flesh	no	mature	15.8619
SRR5405143	ripe fruit peel	no	mature	19.1804
SRR6320572	ripe fruit peel	no	mature	12.1546
SRR7403504	fruit	uninfected	mature	24.311
SRR7403506	fruit	uninfected	mature	25.8186
SRR7403507	fruit	uninfected	mature	24.9925
SRR7403500	fruit	infected with penicillium expansum	mature	9.08836
SRR7403501	fruit	infected with penicillium expansum	mature	7.32623
SRR7403508	fruit	infected with penicillium expansum	mature	7.56203
SRR7403502	fruit	infected with penicillium expansum	mature	7.98101
SRR7403503	fruit	infected with penicillium expansum	mature	10.4689
SRR7403505	fruit	infected with penicillium expansum	mature	8.85129
SRR1613973	Central seeds	no	20DAPF	10.944
SRR1613974	Central seeds	no	20DAPF	12.0141
SRR1613975	Central seeds	no	20DAPF	11.7934
SRR1613976	Lateral seeds	no	20DAPF	9.66366
SRR1613977	Lateral seeds	no	20DAPF	10.5772
SRR1613978	Lateral seeds	no	20DAPF	10.1256
SRR3744786	stem	no	mature	6.25753
SRR3744787	stem	no	mature	6.98665
SRR3744772	stem	no	mature	6.6449
SRX765691	seedling shoot apex	no	4-6 week old seedling	12.032
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	13.9744
SRR1089478	leaf	Virus-free	plantlets	8.24859
SRR1089477	leaf	ASGV-infected	plantlets	8.95768
SRR767660	leaf	uninfected	fully developed	9.57878
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	9.99282
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	10.0714
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	15.7157
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	9.48888
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	12.8255
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.18545
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	7.94969
SRR6308182	young leaf	no	immature leaves	16.683
SRR3744769	leaf	no	mature	5.45586
SRR3744770	leaf	no	mature	5.60812
SRR3744771	leaf	no	mature	4.60293
SRR5405145	leaf	no	mature	16.0548
SRR6320561	leaf	no	mature	9.79698