Gene detail

Detail information of MD16G1199500 Annotation

Gene ID	Annotation
MD16G1199500	RmlC-like cupins superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1199500	mRNA	Chr16	18029837	18031594	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G43850.1	1	ARD4;ATARD4\|RmlC-like cupins superfamily protein
Prunus persica	Prupe.1G021000.2.p	1	RmlC-like cupins superfamily protein
Prunus persica	Prupe.1G021000.1.p	0.833	RmlC-like cupins superfamily protein
Pyrus communis	PCP030607.1	1	-
Pyrus x bretschneideri	Pbr018845.1	1	-
Rosa multiflora	Rmu_sc0003953.1_g000019.1	1	-
Rosa multiflora	Rmu_sc0006621.1_g000002.1	0.9	-
Vitis vinifera	GSVIVT01018039001	1	RmlC-like cupins superfamily protein
Solanum lycopersicum	Solyc09g082630.2.1	1	RmlC-like cupins superfamily protein
Populus trichocarpa	Potri.008G157400.1	1	RmlC-like cupins superfamily protein
Nicotiana benthamiana	Niben101Scf05972g02009.1	1	"1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1"

Gene Ontology

GO term	Description	Category
GO:0019509	L-methionine biosynthetic process from methylthioadenosine	biological_process
GO:0055114	oxidation-reduction process	biological_process
GO:0010309	acireductone dioxygenase [iron(II)-requiring] activity	molecular_function

KEGG

KO	Description	Enzyme
K08967	"1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase"	EC:1.13.11.53 1.13.11.54

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03079.10	ARD	5	158	2.50E-58

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	188.375
SRR5252888	dormant buds	no	dormant buds(0 month)	34.0642
SRR5252889	dormant buds	no	dormant buds(0 month)	40.1764
SRR5252886	dormant buds	no	dormant buds(1 months)	14.1104
SRR5252887	dormant buds	no	dormant buds(1 months)	13.6635
SRR5252884	dormant buds	no	dormant buds(2 months)	16.7646
SRR5252882	dormant buds	no	dormant buds(3 months)	18.1485
SRR5252883	dormant buds	no	dormant buds(3 months)	27.7734
SRR5252880	dormant buds	no	dormant buds(4 months)	26.9021
SRR5252881	dormant buds	no	dormant buds(4 months)	31.6341
SRR5252878	bud break	no	bud break	42.1827
SRR5252879	bud break	no	bud break	14.5623
SRR3744766	flower	no	mature	12.4165
SRR3744767	flower	no	mature	15.1357
SRR3744768	flower	no	mature	15.0915
SRR6308190	stigmas	no	open flowers	7.2405
SRR6308181	styles	no	open flowers	4.42988
SRR6308188	filaments	no	open flowers	6.96779
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	3.29532
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	2.73497
SRR6308194	sepals	no	open flowers	14.1434
SRR6308193	receptacles	no	open flowers	11.8038
SRR6308189	ovaries	no	open flowers	7.86231
SRR3384922	fruit	no	1 week after full bloom	16.8701
SRR3384921	fruit	no	2 week after full bloom	20.4251
SRR3384920	fruit	no	3 week after full bloom	67.4126
SRR3384919	fruit	no	4 week after full bloom	36.3113
SRR3384923	fruit	no	5 week after full bloom	57.4482
SRR3384918	fruit	no	6 week after full bloom	36.4606
SRR3384917	fruit	no	8 week after full bloom	60.8805
SRR3384916	fruit	no	10 week after full bloom	56.8041
SRR3384915	fruit	no	12 week after full bloom	72.1215
SRR3384914	fruit	no	14 week after full bloom	88.7507
SRR3384913	fruit	no	16 week after full bloom	42.3744
SRR3384912	fruit	no	18 week after full bloom	42.2603
SRR3384911	fruit	no	19 week after full bloom	41.197
SRR3384910	fruit	no	20 week after full bloom	17.8969
SRR768128	whole fruit	no	25 days post anthesis	72.0667
SRR768129	whole fruit	no	35 days post anthesis	20.5238
SRR768130	whole fruit	no	60 days post anthesis	31.1068
SRR768131	whole fruit	no	87 days post anthesis	22.9999
SRR7343308	immature fruit flesh	no	immature	27.3791
SRR7343309	immature fruit flesh	no	immature	26.6275
SRR6320494	ripe fruit flesh	no	mature	30.6948
SRR5405143	ripe fruit peel	no	mature	36.6473
SRR6320572	ripe fruit peel	no	mature	19.6376
SRR7403504	fruit	uninfected	mature	26.3229
SRR7403506	fruit	uninfected	mature	24.741
SRR7403507	fruit	uninfected	mature	26.9495
SRR7403500	fruit	infected with penicillium expansum	mature	1.78564
SRR7403501	fruit	infected with penicillium expansum	mature	0.794954
SRR7403508	fruit	infected with penicillium expansum	mature	2.48333
SRR7403502	fruit	infected with penicillium expansum	mature	1.77229
SRR7403503	fruit	infected with penicillium expansum	mature	1.9795
SRR7403505	fruit	infected with penicillium expansum	mature	1.48278
SRR1613973	Central seeds	no	20DAPF	6.23928
SRR1613974	Central seeds	no	20DAPF	6.13812
SRR1613975	Central seeds	no	20DAPF	6.40505
SRR1613976	Lateral seeds	no	20DAPF	6.24828
SRR1613977	Lateral seeds	no	20DAPF	6.3887
SRR1613978	Lateral seeds	no	20DAPF	7.04587
SRR3744786	stem	no	mature	33.7816
SRR3744787	stem	no	mature	39.1631
SRR3744772	stem	no	mature	34.6725
SRX765691	seedling shoot apex	no	4-6 week old seedling	13.2558
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	36.9726
SRR1089478	leaf	Virus-free	plantlets	60.393
SRR1089477	leaf	ASGV-infected	plantlets	67.8717
SRR767660	leaf	uninfected	fully developed	317.159
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	38.7613
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	165.834
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	270.782
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	47.8158
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	112.612
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	117.1
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	70.9633
SRR6308182	young leaf	no	immature leaves	9.6094
SRR3744769	leaf	no	mature	48.8442
SRR3744770	leaf	no	mature	48.5951
SRR3744771	leaf	no	mature	44.0742
SRR5405145	leaf	no	mature	89.8607
SRR6320561	leaf	no	mature	114.938