Gene detail

Detail information of MD16G1208000 Annotation

Gene ID	Annotation
MD16G1208000	CRM family member 3A

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0392	tRNA metabolic process chloroplast organization chloroplast rRNA processing polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] transcription from plastid promoter negative regulation of isopentenyl diphosphate biosynthetic process RNA catabolic process Tic complex

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1208000	mRNA	Chr16	19528409	19534015	+

Sequences

CDS:

MD16G1208000

TAACAAGCTAGCAACATAGCCAGAGTACACGAGGAAGAAGAAGTTAACAGTGTTTGTTCTCCCATCAGTTGAACCCCGTAAAACCTCACCAAACCTCTGATAAAATTGATGCCCCTCCGTCTCTTCAATCCGCGATGACTCTCATGCCCAGTCGTCAACTTTACCCTACGAGCTTGTTCGACTCGTTCCAGAGCTCCTTGTCGAAATTCAATAGCGCCCATATCCAGTTCTTCAGGTATGGCTCCTCAATTCCTTTCAAGAACCACACTTTCTATACCACCCACTGCATTATCAGCTCTCCTTTAAACCCTGACCCAAACCCAATGAGGAAATCGAATTTTGTTGGGAGAAATCGACCCGTTTATCAGTGTAAACTTAAGAGGAATTTGTGTAGTAGTAGTTGGATTAATAAATGGAATGAATCCCACAAGCATAATCGACCAAAACCGCCTCGGGCCGTGTTGGATTATCAGAGTAGTGAAGGTGGGAATGGTTCAGGAAATGGTGGTGGTAGTACAATGGAGAAGATAGTGGAGAAATTGAAGAAGTTTGGGTACGTTGATGATAGTAATGACAGTAAAGGGGAAGTAAGGGGGAGAGTGATTGAGAAGGGTTCAGTGGAGGATATATTTTATGTTGAGGAAGGAATGCTGCCAAATTCGAGGGGTAGGTTCTCGGCTGATTCGCCATTGGGGGTAGAGAATGTGTTTGGAAGTGATGGGAAGGTAAAGTTTCCATGGGAAAAGCCTGCAGAGGAAGAGAAGCAGGAGGAGGGTTCGGTGAGGAGGAAGAGTAGGACTTCAGTAGCGGAATTGACACTTCCAGAGTCTGAGTTGAGGAGGCTGAGGAATTTGACATTTCAGAAGAAGCACAAAACTAGGATTGGAGGTGCTGGTGTTACCCAAGCCGTAGTGGACATGATCCACGAGAGATGGAAGACTTCGGAGATTGTGAGATTGAAAGTTGAAGGTCCACCGGCTCTTAACATGAAGAGAATGCATGAGATATTGGAGCGGAAAACTGGTGGTTTGGTGGTCTGGAGGTCGGGCACATCTCTTTCTTTATACAGAGGTGTGAGCTATGAGGTTCCTTCAGTGCAACTAAACAAGCGGATATACAAGAAAAATGACAGCTCTTCGGCATCTTTACCAACTGTTGCTGATAAATCTGTGGGAGACTTTGTTGAGATTGCTTCTTATGGTAATGTAAATACACCCCAAGAAAAGCTGGAGAGTACTTTCTTGGAGAAGAAAGACACAGAACAATTGCCAGAAGTGAAGTATGAAGATGAAGTAGACGAACTTTTAGATAGTTTAGGCCCCAGATTCAAAGATTGGCCCGGATGTGATCCATTACCTGTAGATGCAGATATGCTTCCAGGGATAGTTCCTGGTTACGAACCACCCTTCAGAGTACTTCCATATGGTGTGCGATCTTCCCTTGGTTTACAAGAGGCAACATCTTTGAGAAGGCTGGCGAGGGTTCTTCCACCACATTTTGCTTTAGGTCGAAGCAGACAGCTCCAGGGTCTAGCAGTGGCCATGGCTAAATTATGGGAACGAAGTTTGATTTCAAAGATTGCACTGAAACGTGGTGTCCAGCTGACTACTAGCGAGCGAATGGCTGAAGACATCAAGAGATTGACTGGGGGTGTGCTGCTATCTCGAAACAAGGACTTCTTGGTCTTCTATAGGGGGAAGAATTTTTTGTCTCCAGAGGTCACTGAAGCGTTACTGGAAAGGGAGAGATTGGCGAAATCCCTTCAAGATGAAGAGGAGCAGGCAAGGTTAAGAGCTTCAGCCATGGTCATACCAAATGTTGAACAAGCTCAACACTTTGGTACCGCGGGTACACTTGGGGAGACCTTGGATGCAGATGCTAAGTGGGGAAAGAGGATGGATAATCATCATAAGAAAAAAGTGATGCAAGAAGCAGACATATTAAGGCACTCCAATTTGTGCAGAAAGCTTGAACGAAAGCTTGCCTTTGCTGAAAGAAAGTTAATGAAAGCTGAACAAGCCTTATCTAAGGTAGAGGAGTGTTTGAAACCATCTATGCGGCAAGCTGACCCAGACAGCATTACTGATGAAGAGAGGTTTATGTTTCGTAAGCTTGGTTTACGGATGAAAGCTTTCTTACTTCTTGGTAGACGTGGAGTGTTTGATGGTACAGTGGAGAACATGCATTTACACTGGAAATACCGGGAATTGGTCAAGATAATGGTGAATGCTAAAAGTTTTGAGCAGGTAAAAAAAATTGCATTAGCACTAGAAGCTGAGAGCGGAGGTGTCTTGGTTTCAGTGGATAAAGTTTCCAAAAAGTTTGCCATAATTGTGTACCGGGGAAAGGACTATCACCGACCTTCTACATTGAGGCCAAAGAATCTCTTGACAAAAAGGAAAGCATTGGCACGCTCTATTGAGATTCAACGGCAGGAGGCTCTTCTAAAACATATTTCAGTGGTGCAGAGTAAAGTGGACACACTTAGATCCGAAATAGAACAAATGGATGCTGTGAAAGAGCATGGAGATGAAGTATTGTACGACAAATTAGATTCTTCATATCCGACTGATGATGATGATGATTCCGAGGAAGAAGATGTTTATCTTGAAACATATAGCGCAGAAAATGATGGTGAAGATGAAGGCAATTACTCAACTCACGATCCTCACCTGGAATCCATTTTTCCTTTTAATATCCAGAATGAGGATTCTCAAACGGAATTGGAAGTTCCTCGACAACATTTGTATGCTGTGCCAGAGGGTTCACTAGACAATGATTAGCAAGATGAAGAAGATAACTCCCTACAATGATGGAATCAACTGAACATAAACCAATGGTACAGCAGCGTTCAGAAATTGTCACAATGGTTGCTCGTCACATTGTACAGATAATTTGGGCAGGCTGACATCTACGTAACTCTACGTTAGTTTTATGGTACAAGTTTCTGTCACGATCTCCCATGTCTATTAATTCTTGAACTAGAAATAACACATACAGCAGGATAAGTCGTCTTAAATTGTGGGAGGAGTTAGATATAGCTGGTTTTTAGGGCATATTGATGTTTTCAGGTCCCAAACTTGTATAACAGTTTTGCTAGAGAAGCCTTCTATGTAAATGAATATGATTCTTAAATCACAGTGGATATTTCATCACCTATTCTAGTCTACAACTTTACTGATT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G23070.1	1	ATCFM3A;CFM3A\|CRM family member 3A
Prunus persica	Prupe.1G030300.1.p	1	CRM family member 3A
Pyrus communis	PCP037253.1	1	-
Pyrus x bretschneideri	Pbr004451.1	1	-
Rubus occidentalis	Ro03_G07090	1	-
Fragaria vesca	mrna14849.1	1	CRM family member 3B
Vitis vinifera	GSVIVT01018109001	1	CRM family member 3A
Populus trichocarpa	Potri.010G077100.1	1	CRM family member 3A
Nicotiana benthamiana	Niben101Scf03824g02005.1	1	"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic"
Oryza sativa	LOC_Os11g37990.1	1	"chloroplastic group IIA intron splicing facilitator CRS1,chloroplast precursor, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0003723	RNA binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01985.17	CRS1_YhbY	229	312	3.60E-34
PF01985.17	CRS1_YhbY	439	520	1.50E-14
PF01985.17	CRS1_YhbY	650	736	8.50E-22

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	6.11988
SRR5252888	dormant buds	no	dormant buds(0 month)	12.5248
SRR5252889	dormant buds	no	dormant buds(0 month)	12.8971
SRR5252886	dormant buds	no	dormant buds(1 months)	13.6373
SRR5252887	dormant buds	no	dormant buds(1 months)	10.669
SRR5252884	dormant buds	no	dormant buds(2 months)	18.1637
SRR5252882	dormant buds	no	dormant buds(3 months)	18.8083
SRR5252883	dormant buds	no	dormant buds(3 months)	11.3893
SRR5252880	dormant buds	no	dormant buds(4 months)	18.7172
SRR5252881	dormant buds	no	dormant buds(4 months)	18.7216
SRR5252878	bud break	no	bud break	11.3246
SRR5252879	bud break	no	bud break	8.82597
SRR3744766	flower	no	mature	3.45916
SRR3744767	flower	no	mature	3.55438
SRR3744768	flower	no	mature	4.17429
SRR6308190	stigmas	no	open flowers	4.39246
SRR6308181	styles	no	open flowers	4.37682
SRR6308188	filaments	no	open flowers	3.11122
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.95365
SRR6308192	pollen	no	open flowers	1.30296
SRR6308191	petals	no	open flowers	2.37852
SRR6308194	sepals	no	open flowers	5.16269
SRR6308193	receptacles	no	open flowers	3.97078
SRR6308189	ovaries	no	open flowers	4.78353
SRR3384922	fruit	no	1 week after full bloom	2.11274
SRR3384921	fruit	no	2 week after full bloom	1.90576
SRR3384920	fruit	no	3 week after full bloom	1.94174
SRR3384919	fruit	no	4 week after full bloom	2.21467
SRR3384923	fruit	no	5 week after full bloom	2.67479
SRR3384918	fruit	no	6 week after full bloom	2.08666
SRR3384917	fruit	no	8 week after full bloom	1.79402
SRR3384916	fruit	no	10 week after full bloom	2.35257
SRR3384915	fruit	no	12 week after full bloom	3.19976
SRR3384914	fruit	no	14 week after full bloom	2.49779
SRR3384913	fruit	no	16 week after full bloom	2.02075
SRR3384912	fruit	no	18 week after full bloom	3.06766
SRR3384911	fruit	no	19 week after full bloom	3.10273
SRR3384910	fruit	no	20 week after full bloom	3.5812
SRR768128	whole fruit	no	25 days post anthesis	4.58164
SRR768129	whole fruit	no	35 days post anthesis	2.39904
SRR768130	whole fruit	no	60 days post anthesis	3.24012
SRR768131	whole fruit	no	87 days post anthesis	2.31272
SRR7343308	immature fruit flesh	no	immature	4.75068
SRR7343309	immature fruit flesh	no	immature	3.84927
SRR6320494	ripe fruit flesh	no	mature	5.56972
SRR5405143	ripe fruit peel	no	mature	5.20491
SRR6320572	ripe fruit peel	no	mature	3.98859
SRR7403504	fruit	uninfected	mature	4.90982
SRR7403506	fruit	uninfected	mature	4.71366
SRR7403507	fruit	uninfected	mature	4.85981
SRR7403500	fruit	infected with penicillium expansum	mature	0.397682
SRR7403501	fruit	infected with penicillium expansum	mature	0.643801
SRR7403508	fruit	infected with penicillium expansum	mature	0.386759
SRR7403502	fruit	infected with penicillium expansum	mature	0.627945
SRR7403503	fruit	infected with penicillium expansum	mature	0.567771
SRR7403505	fruit	infected with penicillium expansum	mature	0.360252
SRR1613973	Central seeds	no	20DAPF	3.61684
SRR1613974	Central seeds	no	20DAPF	3.85153
SRR1613975	Central seeds	no	20DAPF	2.8816
SRR1613976	Lateral seeds	no	20DAPF	3.04955
SRR1613977	Lateral seeds	no	20DAPF	3.05393
SRR1613978	Lateral seeds	no	20DAPF	3.39486
SRR3744786	stem	no	mature	6.30475
SRR3744787	stem	no	mature	5.93964
SRR3744772	stem	no	mature	6.37559
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.90296
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.86929
SRR1089478	leaf	Virus-free	plantlets	1.89292
SRR1089477	leaf	ASGV-infected	plantlets	2.2213
SRR767660	leaf	uninfected	fully developed	5.02458
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	4.6853
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.72507
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.73535
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	3.06822
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.50713
SRR6308182	young leaf	no	immature leaves	4.84945
SRR3744769	leaf	no	mature	4.8388
SRR3744770	leaf	no	mature	5.7357
SRR3744771	leaf	no	mature	5.27761
SRR5405145	leaf	no	mature	14.2244
SRR6320561	leaf	no	mature	11.2306