Gene detail

Detail information of MD16G1219600 Annotation

Gene ID	Annotation
MD16G1219600	NAD(P)-linked oxidoreductase superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM1028	chloroplast stroma chloroplast envelope large subunit ribosomal protein L15 sterol 3beta-glucosyltransferase [EC:2.4.1.173] large subunit ribosomal protein L19 glutamyl-tRNA reductase [EC:1.2.1.70] sterol 3-beta-glucosyltransferase activity glutamyl-tRNA reductase activity plastid large ribosomal subunit

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1219600	mRNA	Chr16	21820052	21825358	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G04420.1	1	NAD(P)-linked oxidoreductase superfamily protein
Prunus persica	Prupe.1G040000.1.p	1	NAD(P)-linked oxidoreductase superfamily protein
Prunus persica	Prupe.1G039700.1.p	0.606	NAD(P)-linked oxidoreductase superfamily protein
Pyrus x bretschneideri	Pbr006660.1	1	-
Rosa multiflora	Rmu_sc0001590.1_g000018.1	1	-
Rubus occidentalis	Ro04_G36881	1	-
Fragaria vesca	mrna11469.1	1	NAD(P)-linked oxidoreductase superfamily protein
Vitis vinifera	GSVIVT01027822001	1	NAD(P)-linked oxidoreductase superfamily protein
Solanum lycopersicum	Solyc06g053600.2.1	1	NAD(P)-linked oxidoreductase superfamily protein
Populus trichocarpa	Potri.008G167400.2	1	NAD(P)-linked oxidoreductase superfamily protein
Oryza sativa	LOC_Os03g41510.6	1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"
Zea mays	GRMZM2G077214_P01	1	NAD(P)-linked oxidoreductase superfamily protein

Gene Ontology

GO term	Description	Category
GO:0055114	oxidation-reduction process	biological_process
GO:0016491	oxidoreductase activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00248.17	Aldo_ket_red	69	401	2.00E-71

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	71.1434
SRR5252888	dormant buds	no	dormant buds(0 month)	3.86765
SRR5252889	dormant buds	no	dormant buds(0 month)	4.23155
SRR5252886	dormant buds	no	dormant buds(1 months)	5.78652
SRR5252887	dormant buds	no	dormant buds(1 months)	2.78487
SRR5252884	dormant buds	no	dormant buds(2 months)	4.26213
SRR5252882	dormant buds	no	dormant buds(3 months)	5.2969
SRR5252883	dormant buds	no	dormant buds(3 months)	4.25296
SRR5252880	dormant buds	no	dormant buds(4 months)	5.47183
SRR5252881	dormant buds	no	dormant buds(4 months)	5.35292
SRR5252878	bud break	no	bud break	8.96034
SRR5252879	bud break	no	bud break	13.47
SRR3744766	flower	no	mature	2.16981
SRR3744767	flower	no	mature	2.65971
SRR3744768	flower	no	mature	2.41358
SRR6308190	stigmas	no	open flowers	7.03076
SRR6308181	styles	no	open flowers	5.03058
SRR6308188	filaments	no	open flowers	2.29331
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	3.35424
SRR6308192	pollen	no	open flowers	8.40922
SRR6308191	petals	no	open flowers	4.08564
SRR6308194	sepals	no	open flowers	15.0459
SRR6308193	receptacles	no	open flowers	3.28412
SRR6308189	ovaries	no	open flowers	4.72284
SRR3384922	fruit	no	1 week after full bloom	7.82952
SRR3384921	fruit	no	2 week after full bloom	4.99082
SRR3384920	fruit	no	3 week after full bloom	12.5616
SRR3384919	fruit	no	4 week after full bloom	8.19634
SRR3384923	fruit	no	5 week after full bloom	12.2748
SRR3384918	fruit	no	6 week after full bloom	8.47432
SRR3384917	fruit	no	8 week after full bloom	9.30777
SRR3384916	fruit	no	10 week after full bloom	11.5592
SRR3384915	fruit	no	12 week after full bloom	10.6625
SRR3384914	fruit	no	14 week after full bloom	10.2102
SRR3384913	fruit	no	16 week after full bloom	5.65319
SRR3384912	fruit	no	18 week after full bloom	9.11534
SRR3384911	fruit	no	19 week after full bloom	8.41888
SRR3384910	fruit	no	20 week after full bloom	6.48309
SRR768128	whole fruit	no	25 days post anthesis	12.7317
SRR768129	whole fruit	no	35 days post anthesis	7.19204
SRR768130	whole fruit	no	60 days post anthesis	7.23488
SRR768131	whole fruit	no	87 days post anthesis	5.0101
SRR7343308	immature fruit flesh	no	immature	4.88103
SRR7343309	immature fruit flesh	no	immature	6.15111
SRR6320494	ripe fruit flesh	no	mature	5.90897
SRR5405143	ripe fruit peel	no	mature	9.74145
SRR6320572	ripe fruit peel	no	mature	6.20483
SRR7403504	fruit	uninfected	mature	8.67514
SRR7403506	fruit	uninfected	mature	7.78558
SRR7403507	fruit	uninfected	mature	8.03173
SRR7403500	fruit	infected with penicillium expansum	mature	0.312275
SRR7403501	fruit	infected with penicillium expansum	mature	0.185363
SRR7403508	fruit	infected with penicillium expansum	mature	0.334068
SRR7403502	fruit	infected with penicillium expansum	mature	0.723192
SRR7403503	fruit	infected with penicillium expansum	mature	0.46157
SRR7403505	fruit	infected with penicillium expansum	mature	0.414896
SRR1613973	Central seeds	no	20DAPF	4.21124
SRR1613974	Central seeds	no	20DAPF	4.25054
SRR1613975	Central seeds	no	20DAPF	3.83101
SRR1613976	Lateral seeds	no	20DAPF	3.59615
SRR1613977	Lateral seeds	no	20DAPF	4.06929
SRR1613978	Lateral seeds	no	20DAPF	4.24756
SRR3744786	stem	no	mature	1.61446
SRR3744787	stem	no	mature	1.45892
SRR3744772	stem	no	mature	1.47478
SRX765691	seedling shoot apex	no	4-6 week old seedling	6.88111
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	11.5905
SRR1089478	leaf	Virus-free	plantlets	14.9859
SRR1089477	leaf	ASGV-infected	plantlets	15.1312
SRR767660	leaf	uninfected	fully developed	38.7312
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	39.943
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	45.0963
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	9.87442
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	9.58351
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	12.9418
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	18.2704
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	11.6954
SRR6308182	young leaf	no	immature leaves	8.9119
SRR3744769	leaf	no	mature	5.72764
SRR3744770	leaf	no	mature	4.67071
SRR3744771	leaf	no	mature	5.58864
SRR5405145	leaf	no	mature	24.425
SRR6320561	leaf	no	mature	33.7169