Gene detail

Detail information of MD16G1227100 Annotation

Gene ID	Annotation
MD16G1227100	AUX/IAA transcriptional regulator family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1227100	mRNA	Chr16	23027760	23030866	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	AUX/IAA

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G33310.3	1	IAA13\|auxin-induced protein 13
Arabidopsis thaliana	AT2G33310.1	1	IAA13\|auxin-induced protein 13
Arabidopsis thaliana	AT2G33310.2	0.982	IAA13\|auxin-induced protein 13
Prunus persica	Prupe.1G049200.1.p	1	auxin-induced protein 13
Pyrus communis	PCP044845.1	1	-
Pyrus x bretschneideri	Pbr033107.1	1	-
Rosa multiflora	Rmu_sc0025234.1_g000002.1	1	-
Rosa multiflora	Rmu_sc0008351.1_g000001.1	0.788	-
Rubus occidentalis	Ro04_G16693	1	-
Fragaria vesca	mrna27891.1	1	AUX/IAA transcriptional regulator family protein
Vitis vinifera	GSVIVT01027921001	1	auxin-induced protein 13
Populus trichocarpa	Potri.008G172400.1	1	auxin-induced protein 13
Nicotiana benthamiana	Niben101Scf01221g00001.1	1	Auxin-responsive protein IAA13
Nicotiana benthamiana	Niben101Scf05929g04005.1	0.681	Auxin-responsive protein IAA13
Oryza sativa	LOC_Os02g57250.1	1	"OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed"
Zea mays	GRMZM2G142768_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	cellular component
GO:0046983	protein dimerization activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	5.25577
SRR5252888	dormant buds	no	dormant buds(0 month)	0.746337
SRR5252889	dormant buds	no	dormant buds(0 month)	1.55626
SRR5252886	dormant buds	no	dormant buds(1 months)	0.505638
SRR5252887	dormant buds	no	dormant buds(1 months)	0.47022
SRR5252884	dormant buds	no	dormant buds(2 months)	1.07277
SRR5252882	dormant buds	no	dormant buds(3 months)	1.18353
SRR5252883	dormant buds	no	dormant buds(3 months)	0.527586
SRR5252880	dormant buds	no	dormant buds(4 months)	2.68447
SRR5252881	dormant buds	no	dormant buds(4 months)	2.26454
SRR5252878	bud break	no	bud break	3.74334
SRR5252879	bud break	no	bud break	3.97306
SRR3744766	flower	no	mature	0.517305
SRR3744767	flower	no	mature	0.373897
SRR3744768	flower	no	mature	0.415211
SRR6308190	stigmas	no	open flowers	0.0854897
SRR6308181	styles	no	open flowers	0.294114
SRR6308188	filaments	no	open flowers	0.441643
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.94372
SRR6308194	sepals	no	open flowers	0.0914612
SRR6308193	receptacles	no	open flowers	0.145883
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	1.25908
SRR3384921	fruit	no	2 week after full bloom	2.45318
SRR3384920	fruit	no	3 week after full bloom	0.816024
SRR3384919	fruit	no	4 week after full bloom	0.753886
SRR3384923	fruit	no	5 week after full bloom	1.01215
SRR3384918	fruit	no	6 week after full bloom	0.938943
SRR3384917	fruit	no	8 week after full bloom	0.813355
SRR3384916	fruit	no	10 week after full bloom	0.440256
SRR3384915	fruit	no	12 week after full bloom	0.520907
SRR3384914	fruit	no	14 week after full bloom	0.404164
SRR3384913	fruit	no	16 week after full bloom	0.119009
SRR3384912	fruit	no	18 week after full bloom	0.111684
SRR3384911	fruit	no	19 week after full bloom	0.107118
SRR3384910	fruit	no	20 week after full bloom	0.0838706
SRR768128	whole fruit	no	25 days post anthesis	2.48582
SRR768129	whole fruit	no	35 days post anthesis	2.79638
SRR768130	whole fruit	no	60 days post anthesis	1.00465
SRR768131	whole fruit	no	87 days post anthesis	0.252071
SRR7343308	immature fruit flesh	no	immature	0.297512
SRR7343309	immature fruit flesh	no	immature	0.296864
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0.0295437
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	10.5544
SRR1613974	Central seeds	no	20DAPF	9.81279
SRR1613975	Central seeds	no	20DAPF	9.91466
SRR1613976	Lateral seeds	no	20DAPF	7.10259
SRR1613977	Lateral seeds	no	20DAPF	8.42994
SRR1613978	Lateral seeds	no	20DAPF	7.67781
SRR3744786	stem	no	mature	0.60165
SRR3744787	stem	no	mature	0.343388
SRR3744772	stem	no	mature	0.365321
SRX765691	seedling shoot apex	no	4-6 week old seedling	6.65924
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.5447
SRR1089478	leaf	Virus-free	plantlets	3.38942
SRR1089477	leaf	ASGV-infected	plantlets	2.25355
SRR767660	leaf	uninfected	fully developed	2.94701
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	4.33331
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.48744
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	13.5351
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.78978
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.297298
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.002
SRR6308182	young leaf	no	immature leaves	7.16753
SRR3744769	leaf	no	mature	0.212879
SRR3744770	leaf	no	mature	0.149329
SRR3744771	leaf	no	mature	0.343102
SRR5405145	leaf	no	mature	0.172373
SRR6320561	leaf	no	mature	0.253872