Gene detail

Detail information of MD16G1246400 Annotation

Gene ID	Annotation
MD16G1246400	Ribosomal protein L30/L7 family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1246400	mRNA	Chr16	27257496	27259416	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G01250.1	1	Ribosomal protein L30/L7 family protein
Arabidopsis thaliana	AT3G13580.2	1	Ribosomal protein L30/L7 family protein
Arabidopsis thaliana	AT3G13580.1	1	Ribosomal protein L30/L7 family protein
Arabidopsis thaliana	AT3G13580.3	1	Ribosomal protein L30/L7 family protein
Prunus persica	Prupe.1G073100.1.p	1	Ribosomal protein L30/L7 family protein
Pyrus communis	PCP021824.1	1	-
Pyrus x bretschneideri	Pbr002640.1	1	-
Rubus occidentalis	Ro04_G13952	1	-
Vitis vinifera	GSVIVT01029655001	1	Ribosomal protein L30/L7 family protein
Populus trichocarpa	Potri.008G008000.2	1	Ribosomal protein L30/L7 family protein
Populus trichocarpa	Potri.018G140300.1	1	Ribosomal protein L30/L7 family protein
Nicotiana benthamiana	Niben101Scf10055g10004.1	1	60S ribosomal protein L7-4
Nicotiana benthamiana	Niben101Scf07765g01010.1	1	60S ribosomal protein L7-3
Oryza sativa	LOC_Os08g13690.1	1	"60S ribosomal protein L7, putative, expressed"

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
K02937	large subunit ribosomal protein L7e	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08079.8	Ribosomal_L30_N	14	84	1.10E-24
PF00327.16	Ribosomal_L30	87	137	1.20E-21

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	166.072
SRR5252888	dormant buds	no	dormant buds(0 month)	40.3867
SRR5252889	dormant buds	no	dormant buds(0 month)	30.778
SRR5252886	dormant buds	no	dormant buds(1 months)	41.8027
SRR5252887	dormant buds	no	dormant buds(1 months)	36.9272
SRR5252884	dormant buds	no	dormant buds(2 months)	45.4582
SRR5252882	dormant buds	no	dormant buds(3 months)	46.6703
SRR5252883	dormant buds	no	dormant buds(3 months)	45.4004
SRR5252880	dormant buds	no	dormant buds(4 months)	56.8765
SRR5252881	dormant buds	no	dormant buds(4 months)	54.5141
SRR5252878	bud break	no	bud break	26.0287
SRR5252879	bud break	no	bud break	71.9029
SRR3744766	flower	no	mature	34.7828
SRR3744767	flower	no	mature	34.019
SRR3744768	flower	no	mature	36.5476
SRR6308190	stigmas	no	open flowers	25.6357
SRR6308181	styles	no	open flowers	38.721
SRR6308188	filaments	no	open flowers	59.0527
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	22.4782
SRR6308192	pollen	no	open flowers	5.53421
SRR6308191	petals	no	open flowers	66.3502
SRR6308194	sepals	no	open flowers	42.6154
SRR6308193	receptacles	no	open flowers	54.0818
SRR6308189	ovaries	no	open flowers	43.511
SRR3384922	fruit	no	1 week after full bloom	83.1364
SRR3384921	fruit	no	2 week after full bloom	68.9169
SRR3384920	fruit	no	3 week after full bloom	51.6798
SRR3384919	fruit	no	4 week after full bloom	64.5693
SRR3384923	fruit	no	5 week after full bloom	52.3481
SRR3384918	fruit	no	6 week after full bloom	62.1727
SRR3384917	fruit	no	8 week after full bloom	52.2071
SRR3384916	fruit	no	10 week after full bloom	52.6939
SRR3384915	fruit	no	12 week after full bloom	56.157
SRR3384914	fruit	no	14 week after full bloom	56.1278
SRR3384913	fruit	no	16 week after full bloom	63.7238
SRR3384912	fruit	no	18 week after full bloom	53.7254
SRR3384911	fruit	no	19 week after full bloom	56.1298
SRR3384910	fruit	no	20 week after full bloom	45.8693
SRR768128	whole fruit	no	25 days post anthesis	47.8293
SRR768129	whole fruit	no	35 days post anthesis	65.4642
SRR768130	whole fruit	no	60 days post anthesis	44.6685
SRR768131	whole fruit	no	87 days post anthesis	36.7445
SRR7343308	immature fruit flesh	no	immature	57.9689
SRR7343309	immature fruit flesh	no	immature	55.7444
SRR6320494	ripe fruit flesh	no	mature	42.6451
SRR5405143	ripe fruit peel	no	mature	37.1989
SRR6320572	ripe fruit peel	no	mature	23.8421
SRR7403504	fruit	uninfected	mature	39.7894
SRR7403506	fruit	uninfected	mature	38.6945
SRR7403507	fruit	uninfected	mature	39.6736
SRR7403500	fruit	infected with penicillium expansum	mature	46.8196
SRR7403501	fruit	infected with penicillium expansum	mature	51.3809
SRR7403508	fruit	infected with penicillium expansum	mature	50.3081
SRR7403502	fruit	infected with penicillium expansum	mature	44.7085
SRR7403503	fruit	infected with penicillium expansum	mature	42.6793
SRR7403505	fruit	infected with penicillium expansum	mature	43.0839
SRR1613973	Central seeds	no	20DAPF	91.9119
SRR1613974	Central seeds	no	20DAPF	85.8504
SRR1613975	Central seeds	no	20DAPF	83.4682
SRR1613976	Lateral seeds	no	20DAPF	82.9973
SRR1613977	Lateral seeds	no	20DAPF	83.7013
SRR1613978	Lateral seeds	no	20DAPF	82.6774
SRR3744786	stem	no	mature	37.5274
SRR3744787	stem	no	mature	38.2017
SRR3744772	stem	no	mature	37.6061
SRX765691	seedling shoot apex	no	4-6 week old seedling	51.9111
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	48.4979
SRR1089478	leaf	Virus-free	plantlets	31.0992
SRR1089477	leaf	ASGV-infected	plantlets	33.5583
SRR767660	leaf	uninfected	fully developed	39.9411
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	60.1786
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	40.6065
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	66.9937
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	22.7579
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	32.2114
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	36.5655
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	44.4994
SRR6308182	young leaf	no	immature leaves	75.596
SRR3744769	leaf	no	mature	29.8768
SRR3744770	leaf	no	mature	31.6478
SRR3744771	leaf	no	mature	34.9654
SRR5405145	leaf	no	mature	16.021
SRR6320561	leaf	no	mature	30.1789