Gene detail

Detail information of MD17G1008800 Annotation

Gene ID	Annotation
MD17G1008800	long chain base2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0049	mitochondrial inner membrane mitochondrial respiratory chain complex III tricarboxylic acid cycle intracellular signal transduction mitochondrial transport Golgi apparatus protein targeting to vacuole response to chitin

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD17G1008800	mRNA	Chr17	563796	568066	-

Sequences

CDS:

MD17G1008800

ATTTGCTGGGAAAATTGTTGTCCGCCGTTCCTAAATGAGCTGGAAAGTGTAAAATATTCACAATTTGATATGGCTTGGAATTTTCGCCAGCGCCAACGCGGTCACTGAATTGAATCCAAAGAGTGGGGCACCAAAAACAGATTGGACGACTAGACACGACGATTCTTCTCCCATCGCCTCTCATCCTCTCCCTCCGTCTGAGTCTGACCCATCCACGGGTCAACCCGACTCAAATACCGGATCTGGGCCACATCTCTGATCTGCACACCCTCAGAAACTCCTGCTCAGAGCTCCGCAACTCCCAGATTCTCCGATCCAGTTCACGTCGCCAAGCTTCACACAGCTTAAACGACGTAGCTTTCGGATCATACAATCATCCCATCGCAAAAATGATTGCGATCCCTTATTTAACCGCGTTAACCACGTACTTCAGCTATGGATTGCTCTTCGTTTTCGGCCAAGTCAGAGATTTCTTCCGCAAAATCATTGACTGGTGGAGTGCTAGCAATTTGCAGGGTTATGCTCCAATCTGTTTAGGACTTGAAGATTTCTATATTCGCCGGCTTTATCTTCGAATTCAGGACTGTTTCAATAGACCTATTGCAAGTGCTCCTGATGCTTGGTTTGATGTGGTTGAACGCTACTCCAATGACTACAACAAAACACTCAAGCTGACGAAAAAAACTAGTCGATGCCTTAACTTAGGATCTTACAATTACCTTGGCTTTGCTGCATCCGATGAGTACTGCACGCCTCGCGCTATTGAGACGTTGAAAAAATATTCTCCCAGTACCTGTAGCAGCAGAGTTGACGGCGGCACCACCGATTTGCATAATGAGCTGGAAGAGTGTGTTGCAAATTTTGTCGGGAAACCTGCTGCAATAGTTTTTGGAATGGGTTATGTCACAAACTCTGCTATCCTTCCTGTCCTGATGGGGAAGGGAGGCTTGATTGTTAGTGATTCTTTGAACCACAACTCTATTGTCAACGGCGCAAGAGGATCTGGAGCTAGAGTTTGTGTTTTCCAACACAATACTCCTGCTCATTTGGAGGAAGTTTTGAGAGAAAAAATCGCAGAGGGGCAGCCTAGGACCCGCAGACCCTGGAAGAAGATAATCGTCATTGTGGAGGGGATATACAGCATGGAAGGGGAGCTTTGTAAACTTCCTGAGATTATAGCAATCTGCAAAAAATATAAGGCATATACATATTTGGATGAGGCCCACAGCATTGGAGCAGTAGGGAAAACAGGAAGAGGTGTTTGTGAGCTCTTAGGAGTCGATACAGCTGATGTAGATATCATGATGGGAACATTTACCAAGTCATTTGGATCATGTGGTGGCTATATTGCAGGATCTAAGGAGCTTATCCAATACTTGAAGTACACTTGCCCTGCTCATCTTTATGCAACTTCAATATCACCACCAGCTGCCCAACAAATAATATGTGCCATAAAGGTCCTTCTTGGAGAGGATGGTTCCAATAGAGGTGCCCAAAAACTTGCACGGATACGAGAGAATAGCAACTTTTTCAGGTCAGAACTACAAAAAATGGGTTTTGAGGTTTTGGGGGATAACGACTCTCCAGTAATGCCGATTATGCTATACAACCCAGCCAAAATTCCTGCCTTCTCACGGGAGTGCCTCAAGCAAAATGTAGCTGTTGTGACAGTAGCATTTCCAGCAACCCCGCTACTGTTGGCAAGGGCACGTATATGCATATCTGCATCTCATACGAGGGAAGACTTGATCAAAGCCTTGGAGGTCTTCGGGAGGGTTGGTGATCTGGTGGGTATAAAATACTTCCCCGCTGAACCAAAGAAGGCGCAGGCCGAAGAAGAAAGGTTGCTGAAGGTGGACTGATTAGCAAAACTGAAGATGGAGGGATGCCTTGGAGCCTTGAATCATCATTTGTGAGCCGTAAAAGGGGTCGTGGAAGCTGGACTAGAGTCTAGGATATGTGATCACGTATGTCAGTGTGTACCTTGTGATTTAACTTGCGGTGTCATCAGCTCTTGTTGTAATGTGGCATTCTCTATATCAAAGGTCTGCACCGTGCTACGCTCGAATAGGGCGTTTCTTGTTCATACATGGTGGATTTTGCTATTTTCTCTTCTCTTCCAATAGTTTTGTTTGTTTAAATTGGTCTTCTCTTCTCATCGTATGAGCTGTACAAATGGAGCCTGTTTAGTTTGTGACCAGAATTTACTATTTTCTTCAGTTATTTTCCAACAATTCCAATGACAAATGGTCAACTGAATATCTAACCAAGTGGGATTAATAGATCTTGTTTATT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G23670.2	1	LCB2\|long chain base2
Arabidopsis thaliana	AT5G23670.1	1	LCB2\|long chain base2
Prunus persica	Prupe.3G312000.1.p	1	long chain base2
Pyrus x bretschneideri	Pbr021880.1	1	-
Rosa multiflora	Rmu_sc0027060.1_g000002.1	1	-
Fragaria vesca	mrna01378.1	1	long chain base2
Vitis vinifera	GSVIVT01008621001	1	long chain base2
Solanum lycopersicum	Solyc03g098220.2.1	1	long chain base2
Populus trichocarpa	Potri.012G104500.1	1	long chain base2
Nicotiana benthamiana	Niben101Scf08137g04001.1	1	8-amino-7-oxononanoate synthase
Nicotiana benthamiana	Niben101Scf02698g01001.1	0.837	8-amino-7-oxononanoate synthase
Oryza sativa	LOC_Os01g70380.1	1	"serine palmitoyltransferase 2, putative, expressed"
Oryza sativa	LOC_Os11g31640.1	1	"serine palmitoyltransferase 2, putative, expressed"
Zea mays	GRMZM2G152888_P01	1	Serine palmitoyltransferase 2;
Zea mays	GRMZM2G142030_P01	0.851	Serine palmitoyltransferase 2;

Gene Ontology

GO term	Description	Category
GO:0009058	biosynthetic process	biological_process
GO:0016740	transferase activity	molecular_function
GO:0030170	pyridoxal phosphate binding	molecular_function

KEGG

KO	Description	Enzyme
K00654	serine palmitoyltransferase	EC:2.3.1.50

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.17	Aminotran_1_2	102	459	2.90E-55

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	14.0952
SRR5252888	dormant buds	no	dormant buds(0 month)	27.8686
SRR5252889	dormant buds	no	dormant buds(0 month)	30.8877
SRR5252886	dormant buds	no	dormant buds(1 months)	23.601
SRR5252887	dormant buds	no	dormant buds(1 months)	27.0458
SRR5252884	dormant buds	no	dormant buds(2 months)	21.2521
SRR5252882	dormant buds	no	dormant buds(3 months)	24.8416
SRR5252883	dormant buds	no	dormant buds(3 months)	24.6045
SRR5252880	dormant buds	no	dormant buds(4 months)	32.8266
SRR5252881	dormant buds	no	dormant buds(4 months)	31.0429
SRR5252878	bud break	no	bud break	26.3704
SRR5252879	bud break	no	bud break	18.2973
SRR3744766	flower	no	mature	30.0402
SRR3744767	flower	no	mature	30.9451
SRR3744768	flower	no	mature	31.7114
SRR6308190	stigmas	no	open flowers	21.7938
SRR6308181	styles	no	open flowers	20.9733
SRR6308188	filaments	no	open flowers	19.1219
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	46.3706
SRR6308192	pollen	no	open flowers	203.921
SRR6308191	petals	no	open flowers	30.8958
SRR6308194	sepals	no	open flowers	26.9263
SRR6308193	receptacles	no	open flowers	22.4162
SRR6308189	ovaries	no	open flowers	21.4945
SRR3384922	fruit	no	1 week after full bloom	16.3286
SRR3384921	fruit	no	2 week after full bloom	19.6947
SRR3384920	fruit	no	3 week after full bloom	23.7035
SRR3384919	fruit	no	4 week after full bloom	24.4897
SRR3384923	fruit	no	5 week after full bloom	23.9205
SRR3384918	fruit	no	6 week after full bloom	30.877
SRR3384917	fruit	no	8 week after full bloom	31.0552
SRR3384916	fruit	no	10 week after full bloom	32.7828
SRR3384915	fruit	no	12 week after full bloom	31.476
SRR3384914	fruit	no	14 week after full bloom	31.1392
SRR3384913	fruit	no	16 week after full bloom	33.3271
SRR3384912	fruit	no	18 week after full bloom	32.8674
SRR3384911	fruit	no	19 week after full bloom	32.058
SRR3384910	fruit	no	20 week after full bloom	31.6446
SRR768128	whole fruit	no	25 days post anthesis	22.8383
SRR768129	whole fruit	no	35 days post anthesis	29.4973
SRR768130	whole fruit	no	60 days post anthesis	34.0849
SRR768131	whole fruit	no	87 days post anthesis	48.4946
SRR7343308	immature fruit flesh	no	immature	27.1229
SRR7343309	immature fruit flesh	no	immature	29.1684
SRR6320494	ripe fruit flesh	no	mature	35.3908
SRR5405143	ripe fruit peel	no	mature	27.9809
SRR6320572	ripe fruit peel	no	mature	28.1542
SRR7403504	fruit	uninfected	mature	23.4364
SRR7403506	fruit	uninfected	mature	24.8203
SRR7403507	fruit	uninfected	mature	24.2664
SRR7403500	fruit	infected with penicillium expansum	mature	100.782
SRR7403501	fruit	infected with penicillium expansum	mature	85.5277
SRR7403508	fruit	infected with penicillium expansum	mature	93.6976
SRR7403502	fruit	infected with penicillium expansum	mature	77.6864
SRR7403503	fruit	infected with penicillium expansum	mature	81.3404
SRR7403505	fruit	infected with penicillium expansum	mature	80.4781
SRR1613973	Central seeds	no	20DAPF	14.4601
SRR1613974	Central seeds	no	20DAPF	14.2047
SRR1613975	Central seeds	no	20DAPF	15.4701
SRR1613976	Lateral seeds	no	20DAPF	13.5236
SRR1613977	Lateral seeds	no	20DAPF	13.6087
SRR1613978	Lateral seeds	no	20DAPF	13.0597
SRR3744786	stem	no	mature	44.5129
SRR3744787	stem	no	mature	44.6383
SRR3744772	stem	no	mature	43.6003
SRX765691	seedling shoot apex	no	4-6 week old seedling	22.9574
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	19.9027
SRR1089478	leaf	Virus-free	plantlets	30.0099
SRR1089477	leaf	ASGV-infected	plantlets	23.332
SRR767660	leaf	uninfected	fully developed	10.9455
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	33.0571
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	10.3814
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	15.4067
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0.880476
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	20.7579
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	13.3014
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	17.3534
SRR6308182	young leaf	no	immature leaves	15.0551
SRR3744769	leaf	no	mature	50.1749
SRR3744770	leaf	no	mature	48.3658
SRR3744771	leaf	no	mature	50.0127
SRR5405145	leaf	no	mature	21.8814
SRR6320561	leaf	no	mature	29.598