Gene detail

Detail information of MD17G1017900 Annotation

Gene ID	Annotation
MD17G1017900	glucose-6-phosphate dehydrogenase 6

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0545	glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] Plant External Response Like Kinase

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD17G1017900	mRNA	Chr17	1402474	1407300	-

Sequences

CDS:

MD17G1017900

TAAACCATGTTACTAATGCCAACACCTACACCGGAGAGAGAAAGAGAGAGAAGCAGAAGAAAGAAATCATTTAAAAACGAAACGCCACCAACCGGCAACCTCCTCATCCGTCACTTTCCATTTGCTATTCAACACCCACTTCTGACTCCCTCCTACTTCCCACACACACTCTCTCTCCTCTCACTGCATCTCAAAATATCAGTTTCTGCGAATTCGATCCGGCTTTGCTCAATAACCAGCTTTTGAGCTGCTTATACAGCTTACGAAATGGGATCGGGATCATGGCACATGGAGAAAAGAGACAGCTTCCGGGTCGAACCCGTTAGAGACATTGATAATGTGCTTGAAAATGGGTCTCTCTCGATTATCGTGCTTGGCGCTTCCGGTGATCTTGCCAAGAAGAAGACTTTTCCGGCACTCTTCAACCTTTATCGGCAGGGATTTCTGCTACCAGAAGAAGTTCACATTTTTGGATATGCGAGGACTAAGATTTCTGATGATGAGCTAAGAAACCGCATACGTGGGTATCTTGTCAGTGACAAAGGAGCTTCGCCCAAGGACGTGGAGAATGTAACCAATTTTTTGCAACTGATCAAATATGTTAGTGGTTCTTATGATGGTGAGGAAGGATTTCGCCTGCTTGATAAGGAAATTTCAGATAATGAAATCTCAAAGAATAGTGCGGAAGGATCATCCCGCAGGCTCTTTTATCTTGCACTTCCTCCATCAGTATACCCCTCTGTCTGCAGGATGATCAGGCATTATTGCATGAATAGATCTGATCTTGGTGGATGGACTCGTATTGTTGTTGAGAAGCCATTTGGCAAGGATTTGGACTCTGCAGAACAACTCAGTAACCAGATCGGGGAGTTGTTCGAGGAATCACAAATTTACCGTATCGATCACTATCTGGGGAAGGAATTGGTGCAGAATCTGTTAGTACTCCGTTTTGCAAATCGATTCTTTTTGCCCCTTTGGAACCGAGACAACATTGAGAATGTACAGATTGTGTTTAGGGAGGATTTTGGAACTGAAGGTCGAGGTGGATACTTTGATGAATATGGAATTATCCGCGATATTATTCAAAATCATCTCTTGCAGGTTCTATGCTTGGTTGCCATGGAAAAACCTATTTCCCTAAAACCTGAGCACATACGGGACGAGAAAGTAAAGGTTCTTCAATCAGTGATGCCAATTAAGGATGATGAAGTTGTTCTTGGACAATATGATGGCTACACAGACGATCCAACTGTTCCTGACCACTCTAACACTCCAACCTTTTCAACCGTGATTCTGCGAATCCACAATGAAAGATGGGAAGGTGTTCCTTTTATACTAAAGGCCGGGAAAGCATTAAATTCAAGAAAGGCAGAAATAAGAGTTCAATTTAAGGATGTTCCTGGTGACATATTCAAATGTAAGAAGCAAGGGAGGAATGAGTTTGTAATACGCTTGCAACCTTCAGAAGCTATGTACATGAAACTTACGGTGAAGCAGCCTGGACTGGAGATGTCAACTGTCCAAAGTGAATTAGACTTGTCATACGGGCAACGTTATCAAGGGGTAACTATCCCGGAGGCTTATGAACGTCTAATTCTTGACACAATAAGAGGTGATCAACAACATTTTGTACGAAGAGACGAGTTGAAGGCGGCGTGGGAAATCTTCACCCCTCTTCTGCACAGGATTGACAATGGTGAGGTAAAGCCGCTTCCATACCAGCCAGGCAGTCGGGGTCCTGCAGAAGCGGATGCACTGCTAGAAAAAGCTGGCTACGTACAAACACATGGCTACATATGGATCCCTCCTACCTTGTAGAATGCTCACCCTTCTAACTTCCAGCTCGGGCGTGCCCTTACGCGGTGTGCCGGAAAAGTGTTGTTTTAACACTGCAATCTTTTATAAGCTATGCAACCAGAATAAGAGTGCAGTATGCTATGTGTATTCAAAACACCTAAACGCCGGCGTTTTTACGAGGGTGTGTCGATAGGGGTCACACGAAATAGACTTGTTGAAGAGTGTTTTGTTCCTATTGAAACATGAACAAATGTTGGGAGGGGAGAAACCCTAAACCCGAATACAGAGTCTCGGATGCATGGATAAATAAAAGAGTTGATTGCTAGTCGAAATATTTTTCTTTGTTATGGTTTCCTTGATATGGAGGAAAAAAGAAG

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G40760.1	1	G6PD6\|glucose-6-phosphate dehydrogenase 6
Prunus persica	Prupe.3G300200.1.p	1	glucose-6-phosphate dehydrogenase 6
Pyrus x bretschneideri	Pbr012494.1	1	-
Pyrus x bretschneideri	Pbr014470.1	0.857	-
Rosa multiflora	Rmu_sc0007150.1_g000005.1	1	-
Rosa multiflora	Rmu_sc0003649.1_g000038.1	1	-
Rubus occidentalis	Ro06_G03865	1	-
Fragaria vesca	mrna26419.1	1	glucose-6-phosphate dehydrogenase 6
Vitis vinifera	GSVIVT01001847001	1	glucose-6-phosphate dehydrogenase 6
Populus trichocarpa	Potri.017G070200.1	1	glucose-6-phosphate dehydrogenase 6
Nicotiana benthamiana	Niben101Scf02296g00016.1	1	glucose-6-phosphate dehydrogenase 6 LENGTH=515
Oryza sativa	LOC_Os02g38840.1	1	"glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform,putative, expressed"
Zea mays	GRMZM2G130230_P01	1	Glucose-6-phosphate 1-dehydrogenase
Zea mays	GRMZM2G031107_P01	1	Glucose-6-phosphate 1-dehydrogenase

Gene Ontology

GO term	Description	Category
GO:0004345	glucose-6-phosphate dehydrogenase activity	molecular_function
GO:0050661	NADP binding	molecular_function
GO:0055114	oxidation-reduction process	biological_process
GO:0006006	glucose metabolic process	biological_process

KEGG

KO	Description	Enzyme
K00036	glucose-6-phosphate 1-dehydrogenase	EC:1.1.1.49 1.1.1.363

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00479.18	G6PD_N	34	222	2.30E-57
PF02781.12	G6PD_C	224	503	1.90E-115

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	8.95753
SRR5252888	dormant buds	no	dormant buds(0 month)	26.2012
SRR5252889	dormant buds	no	dormant buds(0 month)	24.8578
SRR5252886	dormant buds	no	dormant buds(1 months)	22.0933
SRR5252887	dormant buds	no	dormant buds(1 months)	17.5344
SRR5252884	dormant buds	no	dormant buds(2 months)	21.1844
SRR5252882	dormant buds	no	dormant buds(3 months)	22.3865
SRR5252883	dormant buds	no	dormant buds(3 months)	16.987
SRR5252880	dormant buds	no	dormant buds(4 months)	20.9608
SRR5252881	dormant buds	no	dormant buds(4 months)	20.6955
SRR5252878	bud break	no	bud break	23.0624
SRR5252879	bud break	no	bud break	22.6574
SRR3744766	flower	no	mature	2.74349
SRR3744767	flower	no	mature	2.32393
SRR3744768	flower	no	mature	2.64063
SRR6308190	stigmas	no	open flowers	9.15788
SRR6308181	styles	no	open flowers	12.2424
SRR6308188	filaments	no	open flowers	23.3074
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.90528
SRR6308192	pollen	no	open flowers	1.47537
SRR6308191	petals	no	open flowers	7.74595
SRR6308194	sepals	no	open flowers	5.07378
SRR6308193	receptacles	no	open flowers	16.9073
SRR6308189	ovaries	no	open flowers	19.6928
SRR3384922	fruit	no	1 week after full bloom	13.5647
SRR3384921	fruit	no	2 week after full bloom	12.9095
SRR3384920	fruit	no	3 week after full bloom	11.4396
SRR3384919	fruit	no	4 week after full bloom	13.9572
SRR3384923	fruit	no	5 week after full bloom	16.9424
SRR3384918	fruit	no	6 week after full bloom	13.0709
SRR3384917	fruit	no	8 week after full bloom	10.7688
SRR3384916	fruit	no	10 week after full bloom	14.2893
SRR3384915	fruit	no	12 week after full bloom	13.8329
SRR3384914	fruit	no	14 week after full bloom	13.6835
SRR3384913	fruit	no	16 week after full bloom	14.8564
SRR3384912	fruit	no	18 week after full bloom	17.026
SRR3384911	fruit	no	19 week after full bloom	19.207
SRR3384910	fruit	no	20 week after full bloom	20.0196
SRR768128	whole fruit	no	25 days post anthesis	15.1067
SRR768129	whole fruit	no	35 days post anthesis	15.5809
SRR768130	whole fruit	no	60 days post anthesis	12.5964
SRR768131	whole fruit	no	87 days post anthesis	24.0536
SRR7343308	immature fruit flesh	no	immature	14.3999
SRR7343309	immature fruit flesh	no	immature	10.5489
SRR6320494	ripe fruit flesh	no	mature	3.66984
SRR5405143	ripe fruit peel	no	mature	7.89979
SRR6320572	ripe fruit peel	no	mature	5.07156
SRR7403504	fruit	uninfected	mature	7.03002
SRR7403506	fruit	uninfected	mature	6.79988
SRR7403507	fruit	uninfected	mature	7.33008
SRR7403500	fruit	infected with penicillium expansum	mature	2.95527
SRR7403501	fruit	infected with penicillium expansum	mature	3.32977
SRR7403508	fruit	infected with penicillium expansum	mature	2.86878
SRR7403502	fruit	infected with penicillium expansum	mature	4.30017
SRR7403503	fruit	infected with penicillium expansum	mature	4.04459
SRR7403505	fruit	infected with penicillium expansum	mature	4.68083
SRR1613973	Central seeds	no	20DAPF	19.53
SRR1613974	Central seeds	no	20DAPF	16.8855
SRR1613975	Central seeds	no	20DAPF	16.314
SRR1613976	Lateral seeds	no	20DAPF	14.9579
SRR1613977	Lateral seeds	no	20DAPF	13.8543
SRR1613978	Lateral seeds	no	20DAPF	14.3086
SRR3744786	stem	no	mature	3.39744
SRR3744787	stem	no	mature	3.89433
SRR3744772	stem	no	mature	3.97011
SRX765691	seedling shoot apex	no	4-6 week old seedling	15.8186
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	17.1536
SRR1089478	leaf	Virus-free	plantlets	7.55959
SRR1089477	leaf	ASGV-infected	plantlets	6.54706
SRR767660	leaf	uninfected	fully developed	2.90429
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	4.94228
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.85923
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.92381
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.94876
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	3.61287
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.55718
SRR6308182	young leaf	no	immature leaves	17.927
SRR3744769	leaf	no	mature	1.69328
SRR3744770	leaf	no	mature	1.94692
SRR3744771	leaf	no	mature	2.22896
SRR5405145	leaf	no	mature	3.6541
SRR6320561	leaf	no	mature	3.17929