Gene detail

Detail information of MD17G1027100 Annotation

Gene ID	Annotation
MD17G1027100	RNI-like superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0169	enzyme activator activity F-box and leucine-rich repeat protein 2/20 positive regulation of sulfur metabolic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD17G1027100	mRNA	Chr17	1934602	1936035	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	F-box

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G40470.1	1	RNI-like superfamily protein
Prunus persica	Prupe.3G291600.1.p	1	RNI-like superfamily protein
Pyrus x bretschneideri	Pbr026983.1	1	-
Rosa multiflora	Rmu_sc0002979.1_g000011.1	1	-
Vitis vinifera	GSVIVT01032408001	1	RNI-like superfamily protein
Solanum lycopersicum	Solyc02g086440.2.1	1	RNI-like superfamily protein
Populus trichocarpa	Potri.017G069800.1	1	RNI-like superfamily protein
Populus trichocarpa	Potri.017G064800.1	0.983	RNI-like superfamily protein
Nicotiana benthamiana	Niben101Scf07788g02007.1	1	F-box/LRR-repeat protein 4
Nicotiana benthamiana	Niben101Scf14009g01003.1	0.825	F-box/LRR-repeat protein 4

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
K10268	F-box and leucine-rich repeat protein 2/20	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.29	F-box	5	34	0.00013

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	5.01104
SRR5252888	dormant buds	no	dormant buds(0 month)	2.54033
SRR5252889	dormant buds	no	dormant buds(0 month)	2.45236
SRR5252886	dormant buds	no	dormant buds(1 months)	2.91965
SRR5252887	dormant buds	no	dormant buds(1 months)	3.02135
SRR5252884	dormant buds	no	dormant buds(2 months)	4.04265
SRR5252882	dormant buds	no	dormant buds(3 months)	4.83932
SRR5252883	dormant buds	no	dormant buds(3 months)	5.05948
SRR5252880	dormant buds	no	dormant buds(4 months)	2.8717
SRR5252881	dormant buds	no	dormant buds(4 months)	3.62212
SRR5252878	bud break	no	bud break	2.60027
SRR5252879	bud break	no	bud break	1.65796
SRR3744766	flower	no	mature	9.88518
SRR3744767	flower	no	mature	9.85922
SRR3744768	flower	no	mature	10.0493
SRR6308190	stigmas	no	open flowers	7.14457
SRR6308181	styles	no	open flowers	5.51815
SRR6308188	filaments	no	open flowers	2.40821
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	8.13598
SRR6308192	pollen	no	open flowers	52.6238
SRR6308191	petals	no	open flowers	3.54234
SRR6308194	sepals	no	open flowers	3.21182
SRR6308193	receptacles	no	open flowers	3.97446
SRR6308189	ovaries	no	open flowers	5.95627
SRR3384922	fruit	no	1 week after full bloom	3.12247
SRR3384921	fruit	no	2 week after full bloom	3.04852
SRR3384920	fruit	no	3 week after full bloom	4.6683
SRR3384919	fruit	no	4 week after full bloom	2.42596
SRR3384923	fruit	no	5 week after full bloom	2.97356
SRR3384918	fruit	no	6 week after full bloom	2.4541
SRR3384917	fruit	no	8 week after full bloom	3.62549
SRR3384916	fruit	no	10 week after full bloom	2.89011
SRR3384915	fruit	no	12 week after full bloom	3.22957
SRR3384914	fruit	no	14 week after full bloom	1.9039
SRR3384913	fruit	no	16 week after full bloom	1.95312
SRR3384912	fruit	no	18 week after full bloom	3.05484
SRR3384911	fruit	no	19 week after full bloom	2.66951
SRR3384910	fruit	no	20 week after full bloom	3.05876
SRR768128	whole fruit	no	25 days post anthesis	4.19745
SRR768129	whole fruit	no	35 days post anthesis	3.15381
SRR768130	whole fruit	no	60 days post anthesis	6.77906
SRR768131	whole fruit	no	87 days post anthesis	5.71498
SRR7343308	immature fruit flesh	no	immature	2.89441
SRR7343309	immature fruit flesh	no	immature	2.88884
SRR6320494	ripe fruit flesh	no	mature	4.49153
SRR5405143	ripe fruit peel	no	mature	3.23452
SRR6320572	ripe fruit peel	no	mature	4.48524
SRR7403504	fruit	uninfected	mature	2.44638
SRR7403506	fruit	uninfected	mature	2.44067
SRR7403507	fruit	uninfected	mature	2.1308
SRR7403500	fruit	infected with penicillium expansum	mature	228.147
SRR7403501	fruit	infected with penicillium expansum	mature	218.803
SRR7403508	fruit	infected with penicillium expansum	mature	224.528
SRR7403502	fruit	infected with penicillium expansum	mature	176.644
SRR7403503	fruit	infected with penicillium expansum	mature	180.585
SRR7403505	fruit	infected with penicillium expansum	mature	177.784
SRR1613973	Central seeds	no	20DAPF	3.6134
SRR1613974	Central seeds	no	20DAPF	2.84609
SRR1613975	Central seeds	no	20DAPF	2.51927
SRR1613976	Lateral seeds	no	20DAPF	3.54519
SRR1613977	Lateral seeds	no	20DAPF	2.4724
SRR1613978	Lateral seeds	no	20DAPF	2.92625
SRR3744786	stem	no	mature	7.54338
SRR3744787	stem	no	mature	9.3654
SRR3744772	stem	no	mature	8.92254
SRX765691	seedling shoot apex	no	4-6 week old seedling	1.78579
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.44064
SRR1089478	leaf	Virus-free	plantlets	0.705268
SRR1089477	leaf	ASGV-infected	plantlets	1.09414
SRR767660	leaf	uninfected	fully developed	2.86101
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.89382
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	3.08009
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.25434
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.8814
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.95211
SRR6308182	young leaf	no	immature leaves	2.52173
SRR3744769	leaf	no	mature	11.1675
SRR3744770	leaf	no	mature	12.1955
SRR3744771	leaf	no	mature	13.9043
SRR5405145	leaf	no	mature	7.53905
SRR6320561	leaf	no	mature	4.15469