Gene detail

Detail information of MD17G1047600 Annotation

Gene ID	Annotation
MD17G1047600	high mobility group

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD17G1047600	mRNA	Chr17	3459222	3464736	-

Sequences

CDS:

MD17G1047600

GCACACTCCCTCACTCTTCAAATCTTCACCGCTTCTTTCTCTCATGCTCGAAGCTTGGCTCCGCAGCTCGGGTTCGATTCCTCGACCGTGAGAAACCATGACGGACGGCCACCTCTTCAACAACATCTCCCTCGGAGGCCGCGGCGGCACGAATCCAGGGCAGCTTAAAATATTTTCAGGAGGAATTTTATGGAAAAAACAGGGAGGTGGTAAAGCAGTCGAGGTTGATAAAGCTGACATTGTTGGGGTAACATGGATGAAGGTCCCAAAGACTAACCAACTTGGTGTTCAGATTAAAGACGGGTTATACTACAAGTTCATTGGATTTCGTGACCAGGACGTCACTAGTTTGACCAATTATTTTCAAAATACATGTGGGTTAACACCGGCGGAGAAGCAACTTTCTGTAAGCGGACGTAATTGGGGAGAAGTGGATTTAAGTGGGAATATGCTGACTTTCTTGGTTGACTCCAAGCAAGCATTTGAGGTATCTTTGGCTGATGTCTCACAAACACAACTTCAGGGAAAAAATGATGTCATCTTAGAGTTCCATGTGGATGATACCACAGGAGCTAATGAGAAAGATTCATTGATGGAAATAAGCTTTCATATACCTAACTCCAACACTCAATTTGTTGGTGACGAGAGTCATCCTCCTGCTCAGGTTTTCCGTGACAAAATCTCGTCGATGGCAGATGTTGGTTCTGGAGGTGAAGATGCTGTTACCACATTTGATAGCATTGCAATCCTTACACCAAGGGGTCGCTACAGCGTGGAACTTCATCTTTCATTCTTGCGGCTACAAGGACAGGCTAATGATTTCAAAATTCAGTACAGCAGTGTTGTTCGGCTGTTTCTACTTCCGAAGTCTAACCAGCCTCATACCTATGTTGTTGTTACTCTTGATCCTCCTATCCGTAAAGGGCAAACATTGTACCCACATATTGTTTTGCAGTTTGAAACTGACCTCGTGTATCAAACCGACCTGGCAATGAGTGAAGAACTTTTGAACACGAAGTACAAGGACAAGTTAGAACTATCTTATAAGGGACTAATGCATGAAGTGTTCACCACAATACTGCGTGGCTTGTCTGGTGCCAAAGTTACGAAACCGGGAAAATTCCGCAGCTGTCAAGATGGTTATGCTGTCAAATCTTCATTGAAAGCTGAAGATGGTGTTCTATATCCTCTGGAGAAGAGCTTCTTTTTTCTACCAAAACCTCCCACCCTTATTCTTCATGATCAGATTGACTATGTGGAATTTGAGAGGCATGGCGCTGGAGGCTCAAATATGCACTATTTTGACCTTCTCATCCGACTCAAAAGTGAGCAAGAACACCTGTTCCGAAACATTCAGAGGAATGAATATCATAATCTTTTTGACTTCATCAGTTCAAAGGGTCTCAAAATCATGAACTTAGGAGAAGGCCAAGCAGCAAATGGTGGTGTGGCTCCTCTTCTTGATGACGCAGATGATGATGCTGTTGACCCGCATCTTGTCCGTGTGAAGAATGAAGCTGGTGATGATGAGAGTGACGAAGAGGATGAAGATTTTGTTATTGACAAGGATGATGGAGGTTCTCCTACTGATGACTCCGGGGAGGATGATTCTGATGCTAGTGAAAGCGGAGGTGAAAAAGAGAAGCCTGCGAAAAAGGAGTCTCGTAAGGAACCTTCAACTTCCAAGGTACCATCTTCCAAGAAACAAAAAACCAAAGATGCAGGTGAAGATGGTTCAAAGAAGAAAAAACAGAAGAAGAAAAAGGATCCAAATGCACCGAAAAGAGCGATGTCTGGTTTCATGTTCTTCTCAAATACGGAGAGAGAGAATGTAAGGAGAGAGAACCCTGGAATTGCGTTTACCGCTGTGGGGAGAGCACTTGGAGAGAAGTGGAAAAAGATGTCGGCTGATGAAAAGGAGCCATATGAAGCAAAGGCTCGTCAAGATAAAGAACGCTACAAGGATGAAATTAACGGCTACAAGAACCCCCAACCCATGAACATAGATTCGGGGAACGAATCTGATTGAAAGCGCGTAGATTAAGATAGGAAATGGAACGAGGCAGTTTTTAGTTCGAAGAGTAGTGTTTCCTTGAGCTCTAGCTCATCGGTAGGATCTGTGTTCGTTTCTTTCTTGCATCTATTTATTTTCTTTGTACAATGTATGGTTAACATTATATACTTGATGTACTAGTTAGGTCATAAAATACCCGTTTTCGTGCCGAGACGACTATTTTCAGATACTCCGACTTCCCACTACGGTGTCTTGCATGCTTCAACACAAAATATTTGTTGCGCTCTTCTTTCATTGTTAGTAGAACAACTACCTCCGGTGGTCTCCTCTTTCTCAACCCTTATTT

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG
Epigenetic Regulators	SSRP

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G28730.1	1	ATHMG;HMG;NFD;SSRP1\|high mobility group;NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D;
Prunus persica	Prupe.3G271500.1.p	1	high mobility group
Pyrus communis	PCP024579.1	1	-
Pyrus communis	PCP000183.1	1	-
Pyrus x bretschneideri	Pbr035228.1	1	-
Rosa multiflora	Rmu_sc0004901.1_g000001.1	1	-
Rubus occidentalis	Ro06_G16334	1	-
Fragaria vesca	mrna01265.1	1	high mobility group
Vitis vinifera	GSVIVT01011349001	1	high mobility group
Solanum lycopersicum	Solyc02g087710.2.1	1	high mobility group
Populus trichocarpa	Potri.004G124000.1	1	high mobility group
Nicotiana benthamiana	Niben101Scf01326g10015.1	1	FACT complex subunit SSRP1 [Medicago truncatula]
Oryza sativa	LOC_Os01g08970.2	1	"SSRP1-like FACT complex subunit, putative, expressed"
Oryza sativa	LOC_Os05g08970.1	1	"SSRP1-like FACT complex subunit, putative, expressed"
Zea mays	GRMZM2G032252_P01	1	protein_coding

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	cellular component
GO:0003677	DNA binding	molecular_function

KEGG

KO	Description	Enzyme
K09272	structure-specific recognition protein 1	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03531.10	SSrecog	76	290	1.40E-78
PF08512.8	Rtt106	349	440	1.30E-22
PF00505.15	HMG_box	561	629	1.40E-22

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	22.1546
SRR5252888	dormant buds	no	dormant buds(0 month)	89.2217
SRR5252889	dormant buds	no	dormant buds(0 month)	83.7622
SRR5252886	dormant buds	no	dormant buds(1 months)	115.042
SRR5252887	dormant buds	no	dormant buds(1 months)	96.5508
SRR5252884	dormant buds	no	dormant buds(2 months)	122.39
SRR5252882	dormant buds	no	dormant buds(3 months)	109.219
SRR5252883	dormant buds	no	dormant buds(3 months)	76.803
SRR5252880	dormant buds	no	dormant buds(4 months)	108.407
SRR5252881	dormant buds	no	dormant buds(4 months)	86.8485
SRR5252878	bud break	no	bud break	63.6333
SRR5252879	bud break	no	bud break	59.7854
SRR3744766	flower	no	mature	21.765
SRR3744767	flower	no	mature	22.6898
SRR3744768	flower	no	mature	20.9676
SRR6308190	stigmas	no	open flowers	47.6274
SRR6308181	styles	no	open flowers	44.2208
SRR6308188	filaments	no	open flowers	28.3594
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	17.1862
SRR6308192	pollen	no	open flowers	9.44045
SRR6308191	petals	no	open flowers	26.4303
SRR6308194	sepals	no	open flowers	32.4127
SRR6308193	receptacles	no	open flowers	39.2843
SRR6308189	ovaries	no	open flowers	41.2098
SRR3384922	fruit	no	1 week after full bloom	26.0302
SRR3384921	fruit	no	2 week after full bloom	20.8307
SRR3384920	fruit	no	3 week after full bloom	15.3235
SRR3384919	fruit	no	4 week after full bloom	18.2628
SRR3384923	fruit	no	5 week after full bloom	17.63
SRR3384918	fruit	no	6 week after full bloom	17.6146
SRR3384917	fruit	no	8 week after full bloom	14.2844
SRR3384916	fruit	no	10 week after full bloom	13.8414
SRR3384915	fruit	no	12 week after full bloom	10.3661
SRR3384914	fruit	no	14 week after full bloom	14.103
SRR3384913	fruit	no	16 week after full bloom	16.241
SRR3384912	fruit	no	18 week after full bloom	17.4021
SRR3384911	fruit	no	19 week after full bloom	20.9836
SRR3384910	fruit	no	20 week after full bloom	23.181
SRR768128	whole fruit	no	25 days post anthesis	21.5191
SRR768129	whole fruit	no	35 days post anthesis	28.0534
SRR768130	whole fruit	no	60 days post anthesis	20.312
SRR768131	whole fruit	no	87 days post anthesis	23.4858
SRR7343308	immature fruit flesh	no	immature	22.6018
SRR7343309	immature fruit flesh	no	immature	18.2405
SRR6320494	ripe fruit flesh	no	mature	25.6451
SRR5405143	ripe fruit peel	no	mature	20.6043
SRR6320572	ripe fruit peel	no	mature	10.994
SRR7403504	fruit	uninfected	mature	24.1012
SRR7403506	fruit	uninfected	mature	24.6625
SRR7403507	fruit	uninfected	mature	23.557
SRR7403500	fruit	infected with penicillium expansum	mature	18.7472
SRR7403501	fruit	infected with penicillium expansum	mature	20.0307
SRR7403508	fruit	infected with penicillium expansum	mature	19.7346
SRR7403502	fruit	infected with penicillium expansum	mature	20.8812
SRR7403503	fruit	infected with penicillium expansum	mature	20.1821
SRR7403505	fruit	infected with penicillium expansum	mature	19.7603
SRR1613973	Central seeds	no	20DAPF	39.7508
SRR1613974	Central seeds	no	20DAPF	40.5211
SRR1613975	Central seeds	no	20DAPF	35.7662
SRR1613976	Lateral seeds	no	20DAPF	34.6437
SRR1613977	Lateral seeds	no	20DAPF	34.4094
SRR1613978	Lateral seeds	no	20DAPF	35.7659
SRR3744786	stem	no	mature	22.2801
SRR3744787	stem	no	mature	22.254
SRR3744772	stem	no	mature	21.1145
SRX765691	seedling shoot apex	no	4-6 week old seedling	36.5787
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	36.6062
SRR1089478	leaf	Virus-free	plantlets	24.2767
SRR1089477	leaf	ASGV-infected	plantlets	26.4781
SRR767660	leaf	uninfected	fully developed	23.273
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	17.2187
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	20.1906
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.6369
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	6.83257
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	29.4483
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	27.6637
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	24.3782
SRR6308182	young leaf	no	immature leaves	33.17
SRR3744769	leaf	no	mature	23.4
SRR3744770	leaf	no	mature	22.5334
SRR3744771	leaf	no	mature	24.957
SRR5405145	leaf	no	mature	46.612
SRR6320561	leaf	no	mature	44.3851