Gene detail

Detail information of MD17G1057600 Annotation

Gene ID	Annotation
MD17G1057600	PHD finger family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0660	centromere complex assembly meiotic sister chromatid cohesion meiotic DNA double-strand break formation

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD17G1057600	mRNA	Chr17	4695370	4707434	-

Sequences

CDS:

MD17G1057600

TTTAGTTCCTCCACCGCACTTTTCCCCGCCATTTGCTTCCTCAAATTCTCCTTCCCAAATCTAGGGCTCCGCAACCGAAACCCTGATTCTCTCCGATATACCCCCGGGTTCCAGCGTAATTACGACCCCCGCCACCCCGCCACTTCATCATTCTCCCTACATGCCCTTGCGGCGCCGATTGCGAACTCACCGGTTGAGCAATCGATGAGTTATCCGGTAGTCACTTCGAGCTCGAGCTCCGGCTCGGCTCACGGCGGCATCAGCCTCTCCAACACGGTGCACTCGGAGGTCGCGCCTTGCTTGCCTCTGCCATCGCTGCCGGTGTTCTGCGGCGCATCTGATCACCTCCGGCTGTTCGACGAGCCGAGTCGGAACAGCGCGTGGCTGAACCGCCCTGACGCAGCTGTTGCGAGTAGGATTGCTGATCTGCTTCGAGAAACCGACGTGTCGTACTTGAACCTTAGGGAGGATGCTGGGGCAGTTCCATACGGTTATGGAGAACCTTTAAAACTTCACGATGTAGTTCTTCATTACAATCCAGACGCCTTTGAGTACAATAGTCCAGGTCCTATTAAGGGGCAAGTGCCTGTTAGTAGTACGGTAGCTGACAAGAAGCCCTTCAAGCCTAGTATACCTATACTAAAGCCTTCTCAAAGGGACTATTCCGTATCTGACAATAATCAGCTCAATGATACTCCTCCTAATGACATAACTACACCATCTTCTAGAAAACCCAAATCCAAGAAAAAAGCTAGTGATGTTATGTCATCAGTGGGACCAGATTCTGCTGAAATTCAAGATGCTACCATCAGAAGCTTTTGTGAGTTGGTGGAGGAGTTCTGTGGCAGAGCTGAAATTATCAGTGATGATCGGGAAGAAACTGAGTGGTTATCTATGCCTCTTTCGGATCTTAGACTGCTTGCAAATGAAATAATGTCTCTTCGAGCAAAGAAGCTTCTACATTTGATTCCTGCAGATACTTTTGTTAGATTGTTAAGGATTTTAGATCATCAGATACATCGAGCTGAAGGCTTGACTATAATTGAATATGAGCAGTCAAATTCAGATGTGGTTTCATCAATACAATGTGCACTGGAGGCCATTCACGCAGCATTAGCAGTAATGGCTCATAACCAGATGCCAAAACAACTATATAAAGAAGAGATCATTGAAAGGATTCTGGAGTTTTCCAGGCATCAGATAATGGATGTTATGTGTGCTTATGATCCATCTTATCGTGCTTTGCATAGGCCAAGTCAAAATGGGTCGCTTGAAGTTGATGAAGATGAAGAGCCTGATGCTGAATTTGGCTCAGCAAGCAAGAAGAGACGCAGTATCAAGACCGTGAAAGTGCAGAAATCCTCATTTAACAGGGTCTCTGCTGCTGTGAATAATATTCTTCAGAAAATGTGCACCATTCTTGGTTTAATCAAGGATTTGTTGTTAATAGAAAGGTTGTCAGATGGTTGTATCTTACAACTAGTGAAAACATGCTTCACAACATTTATGGTGGATAATATCCAGCTCTTGCAACTGAAGGCAATGGGTTTGATCAGTGGGATATTCTATTCATACACTCAGCATCGCACATATGTGATAGATGAATTAATTCAGTTGCTTTGGAAGTTGCCAGTCTCGAAGCGAGCTTTGAGAGCATATCACCTACCTGACGAAGAGCAAAGGCAGATTCAGATGATCACTGCTTTGCTGATTCAGTTGGTTCACTATAGTGCAAACCTTCCTGAATCATTAAGGCAGGAATCAAGTAGTAATTCTATCTTAGAACTCTCTGTCAATGCCGATTATCCAACTAAAGGTCACGAGGCAGCAACAGAGGCATGTTGTCACTTTTGGACTCGTGTACTTCAGCGCTTTGCTGGTGCAAAGACTCAGGAAGCTTCAGAGTTGAAAGTAATGATGGAGAATCTTGTTACCGATCTCTTGACAACATTGAATTTACCTGAATATCCAGCTTCAGCTCCTATTCTGGAGGTTCTTTGTGTCTTGTTACTCCAGAATGCTGGGCTGAAATCTAAAGACGTAGCCGCACGTTCAATGGCTATAGACCTTCTCGGCACAATTGCTGCGAGATTGAAGCGTGATTCTCTCCTTTGCAGTAGGGACAAAATCTGGATACTTCAGGAGTTGGTTAGTGACGATGGGGTTGATCAGACATATCCAAGAGATGCATGCTCAGTTTGTTTAGATGGTAGGGTTGAAAAAAATGTCTTTGTTTGTCAAGGTTGTCAGAGAATGTTTCATGCTGATTGTATGGGAGTGAGAGAATATGAAGTTCCAAATCGAAGTTGGCACTGTCAGATATGCCTCTGCAGGAAGCAACTTCTTGTTTTACAATCCTACTGTAAGTCACAATGCAAAGATGAAGGAATAAAGGATCGAAGTCGTTCAGGAAGAAACACTGAAGTTGCGTTTTCAATTACGAAGCCTGAGGTAGTCCAACAGATGCTTTTGAATTACCTTCAAGATACCACATCAGCTGATGATGGGCATCTCTTTGTTCGCTGGTTTTATCTCTTGTTGTGGTACAAGGATGATTCGAAATCACAGCAGAAGTTCATGTACTATCTTGCTAGACTGAAATCAAAAGAAATAGTTCGGGATTCTGGGACTGGTTTTTCATTATTGACAAGGGATTCGGTCAAGAAAATTACTTTAGCATTGGCACAAAAAAACTCTTTCTCCAGAGGGTTTGATAAGATTCTTCATTTGCTTCTGGCAAGCTTAATGGAGAATTCTCCTGTAATCAGGGCCAAGGCTTTACGAGCGGTCAGTATCATTGTAGAAGCTGATCCGCAGGTTTTAGGAGACAAACGCGTTCAATCAGCTGTTGAAGGAAGGTTTTGTGATTCCGCAATTTCCGCTAGAGAAGCAGCACTGGAGCTTGTAGGAAGGCATATTGCTTCTCATCCTGATGTTGGTTTGAAGTATTTTGAGAAGGTTGCTGAGAGAATTAAAGATACTGGAGTAAGTGTTCGAAAGCGATCTATCAAAATCATACGAGATATGTGCGTTTCAAATGCAAACTTCTCCGAATTTACAAGTGCTTGCATTGCTATCATCTCCCGTATTAGTGACGATGAATCAAGCATACAGGATATTGTTTGCAAGACATTTTATGAGTTCTGGTTTGAGGAACCTACTGGTTCACAAACTCAATTCTTTGGAGATGGTAGCTCTGTTCCATTGGAGGTGGCTAAAAAAACTGAACAGATCGTTGAGATGTTGAGGAGGATGCCAAGTCACCAACCTCTTGTGACAGTCATTAAACGCAACTTGGCCCTTGATTTTTTTCCACAATCAGCTAAAGCGGTTGGGATCAACCCTTCCTCACTTGCATCAGTACGCAAGCGCTGTGAGTTAATGTGCAAGTGCTTACTGGAAAAGATATTGCAGGTAGAGGAAATGAATATCCAGGAGGTAGAGAGGCGGGCCCTTCCGTATGTGCTAGCTTTGCATGCATTCTGTGTTGTGGATCCAAAGCTTTGTGCACCGGCTTCTGACCCTTCACAGTTTGTGGTCACTCTTCAGCCTTATCTAAAGAGTCAGGCTGATAATCGAGTGGTTGCACAATTAGTGGAGAGTATAATCTTTATAATTGATGCTGTTCTTCCTTTGGTAAGAAAGTTACCGCGAGCTGTTGTGGAAGAACTTGAACAGGACTTAAAGAACATGATTGTTCGGCATTCCTTCTTGACTGTTGTTCATGCTTGCATAAAGTGCCTCTGTGCTGTGAGTAAAGTGGCAGGAAAAGGTGCTGCTATAGTGGAGAATCTTATCCAGGTGTTCTTCAAACGTTTGGATGCTCAGGCAGTAGATAACAAGCAGCAAGTGGGGCGGTCTCTTTTCTGTCTCGGATTGCTTATCCGTTATGGCAACTCTTTGCCCAGTAACTCCGACAAAACAATTGATGTTGTTAGCAGTCTCAGCTTGTTTAAAAAATATCTTCTAGTGGAGGATTTTGTAATAAAGGTTCGGTCATTGCAGGCATTGGGCTTTGTTCTAATAGCTAGGCCCAAATATATGTTGGAAAAAGATATTGGGAAGATAATAGAGGCAACATTCTCTTCTAGCTCTGATGTTCGTCTTAGGATGCAAGCATTGCAAAACATGTACGACTATCTTCTTGATGCCGAAAGTCAAATGGGAACAGATGCGGCTAGTGATAATGTGATTCATTATAATGTGGAAGGCGGCAATGCTGTATCTGTTGCTGCGGGTGCTGGAGATACTAATATCTGTGGTGGTATAGTTCAGTTGTATTGGGATAACATGTTGGCAAGATGTTTAGACCTTAATGAACAAGTTCGCCAATCTGCAATTAAGATTGTTGAAGTTGTACTGCGGCAAGGGCTCGTACATCCTATTACATGCGTTCCCTACCTTATTGCTCTCGAAACAGATCCACTGGAGGCCAATTCGAAGTTAGCTCATCATTTACTGATGCAAATGAATGAAAAGTACCCTGCATTTTTCGAAAGCCGCCTGGGAGATGGCCTTCAAATGTCTTTTACTTTCATACAGTCCATTAGTACTAGTTCTGAACACGAGAACAAAAAAGTTCAAGCAAAGGCTTCTGGAAATGCAAAGGGAAAATCTGATAGTGTTTCTCTCGCACAAGGCAGACTTGGGGTTTCTCGAATCTACAAGCTTATTCGTGCTAACCGAACTTCAAGAAACAAATTTATGTCTTCGATTGTTCGCAAGTTTGATAGTGCTAGCTGGACACCTTCAGTAGTCCCTTTCCTGATGTACTGCACAGAAATACTCGCCTTGCTACCCTTCACAACACCTGATGAACCGCTTTATTTGGTCTATTCTATAAATAGAGTAGTACAAGTTAGGGCTGGGGCACTCGAAGCAAAGCTGAAAGCTCTGACTTTGCATTTGTTACAAAGAGGTGCATCTCATGGCAACGGCATAATTGAAGATGGCTTAGCTGCTCAGCCTCTTACGGGAGGTATGGCATCATTGGACTTGAATGGGACAGTTGAACAAGAACCAGTGTTCCAACCTGTTACAAATTATATGTCAACGGAGTGGAATGGTACATTACGACAAGAGCCAGCATATCAGTCTGTCTCCAATCAAGCTAACCCGTATGAGGCAAACATGCATGTTACGGGCTCTAGCAGTTCCGGTGGCTTCTCAATAGATGACGTACAGAAATTCCAGGCGGACTGCCTTGCAGCTATTGCAGTGCAGCTTCTTTTGAAACTAAAGAGACACCTAAAAATTGTGTATAGCCTGAATGATGCAAGGTGCCAGGCTTTTTCTCCGGGTGAACCCCCTAAACCGGGAGAAGTACTCTCGAGGCAGAACGTCCCTTTTGACCTCAGTGATACGCACACCAATTTGCCTACAACTTATCAAGAATTGGTACAAAGATATCAGGAATTCAAGAATGCATTGAGGGAGGATACGATTGATTTCTCTACTTACACTGCAAACATCAAGAGAAAACGCCCGGCCCCCAGAAAAGGACGGAAATCTGTGGCTGGAGACGATGAGGGCGAAGATGATGATGAGGATTATTCAGGTGGGGCTCGGAGGCCGAGTAATATTGGAAGGAGAGGTGGCTACAGTATCAGAAGTCGACAGCGGTTATAGCATATGACAGGTAGGCTAACTTGTACATGTTGTAGGAGAAAGGAATAGCAATAGCCGATAGGGGATAGGGGATAGGGGATGGTACGATGAGAGCTGAAAAAGTAGATCTCTGGAAACCGTAGAGAATTCCAGAAAAAATAGATTTCCGTATTTTGAAATTTGCCCGAGAGAGCGTATATCAATAGTATTTTTGTGAATGAAATCGTCTTTTTGTTTTAATTTTTAAATGTTGCCGAGATTGACAGTTTCTCGTCAAATCGTCAACTATTTGTTGTAACTTTATTACATTTGGTGTACTGGATTGTATTTTCAGCACACTAGAAAATGTCTGCTTTCAGTCATTCAGAAGCAGTCTCAAACAGGCCGATGCTATGCATTTCATTCGGACATTCCTTAGAAATCAAT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G15540.1	1	ATSCC2;EMB2773;SCC2\|ARABIDOPSIS THALIANA SISTER-CHROMATID COHESION 2;EMBRYO DEFECTIVE 2773;SISTER-CHROMATID COHESION 2
Arabidopsis thaliana	AT5G15540.2	0.989	ATSCC2;EMB2773;SCC2\|ARABIDOPSIS THALIANA SISTER-CHROMATID COHESION 2;EMBRYO DEFECTIVE 2773;SISTER-CHROMATID COHESION 2
Pyrus communis	PCP026610.1	1	-
Pyrus x bretschneideri	Pbr038343.1	1	-
Rosa multiflora	Rmu_sc0006218.1_g000028.1	1	-
Rubus occidentalis	Ro06_G18308	1	-
Fragaria vesca	mrna04303.1	1	PHD finger family protein
Vitis vinifera	GSVIVT01011514001	1	PHD finger family protein
Solanum lycopersicum	Solyc03g059420.2.1	1	PHD finger family protein
Populus trichocarpa	Potri.017G092600.1	1	PHD finger family protein
Nicotiana benthamiana	Niben101Scf02289g10015.1	1	Sister chromatid cohesion protein 2
Nicotiana benthamiana	Niben101Scf06043g01001.1	0.792	Sister chromatid cohesion protein 2
Oryza sativa	LOC_Os07g01940.1	1	"sister chromatid cohesion 2, putative, expressed"
Zea mays	GRMZM2G018926_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12830.3	Nipped-B_C	1352	1549	2.60E-53

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.50718
SRR5252888	dormant buds	no	dormant buds(0 month)	6.35216
SRR5252889	dormant buds	no	dormant buds(0 month)	6.47735
SRR5252886	dormant buds	no	dormant buds(1 months)	5.37943
SRR5252887	dormant buds	no	dormant buds(1 months)	6.11098
SRR5252884	dormant buds	no	dormant buds(2 months)	6.97089
SRR5252882	dormant buds	no	dormant buds(3 months)	6.08665
SRR5252883	dormant buds	no	dormant buds(3 months)	6.48306
SRR5252880	dormant buds	no	dormant buds(4 months)	6.6765
SRR5252881	dormant buds	no	dormant buds(4 months)	6.11985
SRR5252878	bud break	no	bud break	6.89528
SRR5252879	bud break	no	bud break	4.94127
SRR3744766	flower	no	mature	2.38896
SRR3744767	flower	no	mature	2.63054
SRR3744768	flower	no	mature	2.06802
SRR6308190	stigmas	no	open flowers	2.77998
SRR6308181	styles	no	open flowers	2.60539
SRR6308188	filaments	no	open flowers	1.99148
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.4435
SRR6308192	pollen	no	open flowers	0.666917
SRR6308191	petals	no	open flowers	1.97485
SRR6308194	sepals	no	open flowers	2.40954
SRR6308193	receptacles	no	open flowers	2.05392
SRR6308189	ovaries	no	open flowers	1.8239
SRR3384922	fruit	no	1 week after full bloom	0.96239
SRR3384921	fruit	no	2 week after full bloom	0.902831
SRR3384920	fruit	no	3 week after full bloom	0.721577
SRR3384919	fruit	no	4 week after full bloom	0.824814
SRR3384923	fruit	no	5 week after full bloom	0.687686
SRR3384918	fruit	no	6 week after full bloom	0.861228
SRR3384917	fruit	no	8 week after full bloom	1.00162
SRR3384916	fruit	no	10 week after full bloom	0.695463
SRR3384915	fruit	no	12 week after full bloom	0.6636
SRR3384914	fruit	no	14 week after full bloom	0.682213
SRR3384913	fruit	no	16 week after full bloom	0.818694
SRR3384912	fruit	no	18 week after full bloom	0.78253
SRR3384911	fruit	no	19 week after full bloom	0.723246
SRR3384910	fruit	no	20 week after full bloom	0.812026
SRR768128	whole fruit	no	25 days post anthesis	1.98345
SRR768129	whole fruit	no	35 days post anthesis	0.731712
SRR768130	whole fruit	no	60 days post anthesis	0.798836
SRR768131	whole fruit	no	87 days post anthesis	1.00931
SRR7343308	immature fruit flesh	no	immature	2.49846
SRR7343309	immature fruit flesh	no	immature	2.33988
SRR6320494	ripe fruit flesh	no	mature	1.24125
SRR5405143	ripe fruit peel	no	mature	2.18792
SRR6320572	ripe fruit peel	no	mature	1.46997
SRR7403504	fruit	uninfected	mature	1.1998
SRR7403506	fruit	uninfected	mature	1.0939
SRR7403507	fruit	uninfected	mature	0.994269
SRR7403500	fruit	infected with penicillium expansum	mature	0.46145
SRR7403501	fruit	infected with penicillium expansum	mature	0.328695
SRR7403508	fruit	infected with penicillium expansum	mature	0.276446
SRR7403502	fruit	infected with penicillium expansum	mature	0.549599
SRR7403503	fruit	infected with penicillium expansum	mature	0.716168
SRR7403505	fruit	infected with penicillium expansum	mature	0.58244
SRR1613973	Central seeds	no	20DAPF	0.716273
SRR1613974	Central seeds	no	20DAPF	0.825452
SRR1613975	Central seeds	no	20DAPF	0.739936
SRR1613976	Lateral seeds	no	20DAPF	0.714087
SRR1613977	Lateral seeds	no	20DAPF	0.64228
SRR1613978	Lateral seeds	no	20DAPF	0.748365
SRR3744786	stem	no	mature	2.54463
SRR3744787	stem	no	mature	2.71632
SRR3744772	stem	no	mature	2.8525
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.90902
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.84215
SRR1089478	leaf	Virus-free	plantlets	2.28214
SRR1089477	leaf	ASGV-infected	plantlets	2.52065
SRR767660	leaf	uninfected	fully developed	0.831022
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.15536
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.325223
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.756655
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.18824
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.866696
SRR6308182	young leaf	no	immature leaves	2.42245
SRR3744769	leaf	no	mature	2.94707
SRR3744770	leaf	no	mature	3.49502
SRR3744771	leaf	no	mature	3.15883
SRR5405145	leaf	no	mature	2.77282
SRR6320561	leaf	no	mature	1.69832