Gene detail

Detail information of MD17G1060400 Annotation

Gene ID	Annotation
MD17G1060400	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0397	mitochondrial protein import protein ZIM17 translation initiation factor IF-3

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD17G1060400	mRNA	Chr17	4907221	4911535	-

Sequences

CDS:

MD17G1060400

TGTGAATTTGCATCAGGGTTGGTTGTTGGCGTCTACCAAAGACTCTTCCTTTTTATCGTGCGCTAACTGTTCGGCTGTCCCTCTCTCTCTCGCTCTCTCTGTCTCTCTCTCTCGCTCGTTCGCTCTCAGTCTGTCTCACTCGCTCACTCTTGTTTGGCGGAAGGTACCCTACCATCTCCACCGTCCCCAAAGCTCTGTCTCTCCCAAACCAATATAGCATTCCCACAAAAGGTGGTATTTTATTTCTGGATTTTTTTGCGCAGAATGGCCTTGCAGAATGCAATTTCTCGACCCACTCCTAGTGCCCAACTTGTTGGAAATGCTTTCATTGAGCAGTATTACCATATTCTTCATAATAACCCAGGCCTGGTCCATCGGTTTTATCAGGATTCAAGTATACTAAGCCGGCCTGATTCCAATGGTGTGATGACATCAGTGACCACTATGCAAGGAATCAATGAGAAGATCCTTTCCTTAAATTACAACAAATATAAGGCTGAGATAAAGACTGCTGATGCTCAGAAGTCTTATGAAGATGGGGTGACTGTGTTAGTTACTGGATGTTTAACAGGCAAGGATAACTTGAAAAGGAAATTCGCCCAATCATTTTTTCTTGCCCCTCAAGACAATGGGTTCTTTGTATTGAATGATGTCTTTAGATTTGTGGAAGATGGAGATCTTTTAGAAAACCATTCAGTTAATGAAGTTAATGATGCTGCAACAATCCTCTCAAGCCAGGATCCAGAGCCAACTCATGTTCCTGATCCTCCTGCACCTGATCTGGAAACTACTCAAGTTGAAGAGAATCCAATTATTGTTGAGAAAACTTATGACACATCAGACCATGAGAGACAATACACTACAGAATCTGACATAGAACCCCCGTCTTATTCAAATGGGAACGATGTCACTGTGGCAGTTGAGCTGGCTTCTACGACAGCCCAAGAGGATAGTTCGAAGAAGTCGTATGCATCAATTGTTAAAGTTCCTAAAGGGAGTCCGGGACCAAGTAAGGTTTATGTGCCTACTAATACTGTAAGAGTGGCTTCTAAGAAAGCGGAAACTAATTTGCCTGGGCCAACTGCACCTGCTTCTGTGCCTGAAGAATCAGCCCCAACTAGCACTAGTGCCTTAGAGAGTAGTGATACTAATGAGGAAGTTGAGGGCTATTCTATTTACATAAGGAATTTGCCCTTAAACGTGACGACTGATCAGCTTCAGGAAGAATTCAAGAAATTTGGACCAATAAAGCAAGGAGGCGTCCAAGTCCGAAATAAGAAACTCCAGGGCCACTGTTTTGGATTTGTTGAGTTCGAGTCTTCAAGTTCCATGAATAGTGCCATTCAGGCTTCACCAATCACTATTGGTGGCCGTCAAGCTGTCATTGAGATAAAGAGAACTACCACTCGAGTTGGTAGCAGTGAAAGAGGTAGATTTCCTCCTGCTGGAAGGGGTGGGTTCCGAAATGACAGCTTTAGAGGCCGTGGGAACTATGGCGGTGGCCGGAGCTTTGGCAGAAACGAATATGTGAGAAGGGGCGAATTCTCAGGCCGAGGCAGGGGTGGACCAGCCGGACGCAGTGGATATGGTTATCAGGCACGAGGGAGGGGCGGACACTCAAGTGAAGCAAACCAGAATGCTGTTTAACATGCATCGGGAATTTTTTGCGGGAATATTTCAACAAGATTGGTTTCGTGATTGGCCCGCTCGGAAGTGTTGATGGTAAGTAGTTTAATCATAATCTAATGAGTGAAAAGCTAAGACTGACATTGTGGTAATGAGATGAAGAGGCATTTTGCTGTAGGTTTAGGATTATTTTTACCAGAAACTTGAGGTCTTCTCGTTTTACCAGAAGCTTTTGAGATTCCTGTGATGGGGTTTGCTTAGTTTTAGTGCTGCTTTTTTAATTAATTATTTTTCCAGCATAGTTGTAGTGTCTAGTGGCTGTAACCAGAAGACCTTAAGAGTTAAATAGATGAGATTTTTTTTTGGTATGCTTTGAATTGTTCATGGATTCACCATTGATTGTTTGGTTTCAAGTTTCGGATATTCTTCTTGTGGGAGAAATTGTTTACTGTGACGGTCAGACTGCAGTGTTATTAATTCACATGCTATAACATAAGCGGATTAGCAGTATCCTGTGACGATGTGAC

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP031120.1	1	-
Rosa multiflora	Rmu_sc0003227.1_g000012.1	1	-
Rubus occidentalis	Ro06_G20180	1	-
Fragaria vesca	mrna04268.1	1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
Vitis vinifera	GSVIVT01032909001	1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
Solanum lycopersicum	Solyc02g066830.2.1	1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
Populus trichocarpa	Potri.017G094600.1	1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
Nicotiana benthamiana	Niben101Scf10616g00009.1	1	Nuclear transport factor 2

Gene Ontology

GO term	Description	Category
GO:0005622	intracellular	cellular component
GO:0006810	transport	biological_process
GO:0003676	nucleic acid binding	molecular_function
GO:0000166	nucleotide binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02136.16	NTF2	17	133	2.40E-30
PF00076.18	RRM_1	304	370	1.50E-13

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.67846
SRR5252888	dormant buds	no	dormant buds(0 month)	7.99115
SRR5252889	dormant buds	no	dormant buds(0 month)	5.95113
SRR5252886	dormant buds	no	dormant buds(1 months)	5.80067
SRR5252887	dormant buds	no	dormant buds(1 months)	6.93559
SRR5252884	dormant buds	no	dormant buds(2 months)	5.16887
SRR5252882	dormant buds	no	dormant buds(3 months)	5.26638
SRR5252883	dormant buds	no	dormant buds(3 months)	4.39363
SRR5252880	dormant buds	no	dormant buds(4 months)	4.92739
SRR5252881	dormant buds	no	dormant buds(4 months)	5.60593
SRR5252878	bud break	no	bud break	7.19815
SRR5252879	bud break	no	bud break	8.7076
SRR3744766	flower	no	mature	2.97911
SRR3744767	flower	no	mature	2.78357
SRR3744768	flower	no	mature	3.17998
SRR6308190	stigmas	no	open flowers	4.06992
SRR6308181	styles	no	open flowers	6.10174
SRR6308188	filaments	no	open flowers	6.1011
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.48797
SRR6308192	pollen	no	open flowers	4.47356
SRR6308191	petals	no	open flowers	3.11697
SRR6308194	sepals	no	open flowers	6.39241
SRR6308193	receptacles	no	open flowers	7.56347
SRR6308189	ovaries	no	open flowers	5.92077
SRR3384922	fruit	no	1 week after full bloom	6.58622
SRR3384921	fruit	no	2 week after full bloom	8.58836
SRR3384920	fruit	no	3 week after full bloom	5.72671
SRR3384919	fruit	no	4 week after full bloom	6.74895
SRR3384923	fruit	no	5 week after full bloom	3.77351
SRR3384918	fruit	no	6 week after full bloom	5.56503
SRR3384917	fruit	no	8 week after full bloom	3.88765
SRR3384916	fruit	no	10 week after full bloom	3.73728
SRR3384915	fruit	no	12 week after full bloom	3.58533
SRR3384914	fruit	no	14 week after full bloom	2.58862
SRR3384913	fruit	no	16 week after full bloom	2.13883
SRR3384912	fruit	no	18 week after full bloom	2.81859
SRR3384911	fruit	no	19 week after full bloom	2.048
SRR3384910	fruit	no	20 week after full bloom	1.60353
SRR768128	whole fruit	no	25 days post anthesis	5.84801
SRR768129	whole fruit	no	35 days post anthesis	5.40261
SRR768130	whole fruit	no	60 days post anthesis	4.01628
SRR768131	whole fruit	no	87 days post anthesis	3.34469
SRR7343308	immature fruit flesh	no	immature	8.18782
SRR7343309	immature fruit flesh	no	immature	7.71398
SRR6320494	ripe fruit flesh	no	mature	0.654589
SRR5405143	ripe fruit peel	no	mature	2.02815
SRR6320572	ripe fruit peel	no	mature	1.51871
SRR7403504	fruit	uninfected	mature	1.04878
SRR7403506	fruit	uninfected	mature	1.13049
SRR7403507	fruit	uninfected	mature	0.885895
SRR7403500	fruit	infected with penicillium expansum	mature	1.54893
SRR7403501	fruit	infected with penicillium expansum	mature	2.29857
SRR7403508	fruit	infected with penicillium expansum	mature	1.95292
SRR7403502	fruit	infected with penicillium expansum	mature	2.01319
SRR7403503	fruit	infected with penicillium expansum	mature	2.24857
SRR7403505	fruit	infected with penicillium expansum	mature	2.11306
SRR1613973	Central seeds	no	20DAPF	7.5092
SRR1613974	Central seeds	no	20DAPF	7.1767
SRR1613975	Central seeds	no	20DAPF	6.19845
SRR1613976	Lateral seeds	no	20DAPF	7.5426
SRR1613977	Lateral seeds	no	20DAPF	6.62809
SRR1613978	Lateral seeds	no	20DAPF	7.05577
SRR3744786	stem	no	mature	2.92399
SRR3744787	stem	no	mature	3.18808
SRR3744772	stem	no	mature	2.76275
SRX765691	seedling shoot apex	no	4-6 week old seedling	7.08587
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	7.54549
SRR1089478	leaf	Virus-free	plantlets	3.70924
SRR1089477	leaf	ASGV-infected	plantlets	3.74038
SRR767660	leaf	uninfected	fully developed	2.03231
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	4.99497
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.67387
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	4.86132
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.54995
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	4.4503
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.53542
SRR6308182	young leaf	no	immature leaves	7.6709
SRR3744769	leaf	no	mature	2.73897
SRR3744770	leaf	no	mature	2.99045
SRR3744771	leaf	no	mature	2.29084
SRR5405145	leaf	no	mature	2.24254
SRR6320561	leaf	no	mature	1.55801