Gene detail

Detail information of MD17G1081300 Annotation

Gene ID	Annotation
MD17G1081300	lipoic acid synthase 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0329	meristem initiation determination of bilateral symmetry double-stranded RNA binding

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD17G1081300	mRNA	Chr17	6789161	6791739	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G20860.1	1	LIP1\|lipoic acid synthase 1
Pyrus communis	PCP022870.1	1	-
Rosa multiflora	Rmu_sc0004020.1_g000029.1	1	-
Rubus occidentalis	Ro06_G05555	1	-
Fragaria vesca	mrna10282.1	1	lipoic acid synthase 1
Solanum lycopersicum	Solyc07g054540.2.1	1	lipoic acid synthase 1
Populus trichocarpa	Potri.007G078400.1	1	lipoic acid synthase 1
Populus trichocarpa	Potri.005G086200.1	0.636	lipoic acid synthase 1
Nicotiana benthamiana	Niben101Scf06032g00006.1	1	Lipoyl synthase
Oryza sativa	LOC_Os04g38330.1	1	"radical SAM enzyme, putative, expressed"
Zea mays	GRMZM2G071714_P01	1	protein_coding

Gene Ontology

GO term	Description	Category
GO:0009107	lipoate biosynthetic process	biological_process
GO:0016992	lipoate synthase activity	molecular_function
GO:0005739	mitochondrion	cellular component
GO:0051536	iron-sulfur cluster binding	molecular_function

KEGG

KO	Description	Enzyme
K03644	lipoyl synthase	EC:2.8.1.8

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04055.17	Radical_SAM	137	299	1.50E-11

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	24.6216
SRR5252888	dormant buds	no	dormant buds(0 month)	4.69326
SRR5252889	dormant buds	no	dormant buds(0 month)	5.37647
SRR5252886	dormant buds	no	dormant buds(1 months)	8.74404
SRR5252887	dormant buds	no	dormant buds(1 months)	5.20982
SRR5252884	dormant buds	no	dormant buds(2 months)	8.54496
SRR5252882	dormant buds	no	dormant buds(3 months)	5.41271
SRR5252883	dormant buds	no	dormant buds(3 months)	5.65232
SRR5252880	dormant buds	no	dormant buds(4 months)	6.52733
SRR5252881	dormant buds	no	dormant buds(4 months)	6.80786
SRR5252878	bud break	no	bud break	8.407
SRR5252879	bud break	no	bud break	7.76871
SRR3744766	flower	no	mature	23.076
SRR3744767	flower	no	mature	23.8078
SRR3744768	flower	no	mature	22.5625
SRR6308190	stigmas	no	open flowers	23.5453
SRR6308181	styles	no	open flowers	18.5544
SRR6308188	filaments	no	open flowers	13.8762
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	19.4428
SRR6308192	pollen	no	open flowers	85.51
SRR6308191	petals	no	open flowers	11.8585
SRR6308194	sepals	no	open flowers	12.6422
SRR6308193	receptacles	no	open flowers	16.4981
SRR6308189	ovaries	no	open flowers	15.2696
SRR3384922	fruit	no	1 week after full bloom	11.9821
SRR3384921	fruit	no	2 week after full bloom	15.6552
SRR3384920	fruit	no	3 week after full bloom	22.9409
SRR3384919	fruit	no	4 week after full bloom	19.1025
SRR3384923	fruit	no	5 week after full bloom	22.8516
SRR3384918	fruit	no	6 week after full bloom	19.8292
SRR3384917	fruit	no	8 week after full bloom	20.1748
SRR3384916	fruit	no	10 week after full bloom	17.9493
SRR3384915	fruit	no	12 week after full bloom	17.0336
SRR3384914	fruit	no	14 week after full bloom	18.9558
SRR3384913	fruit	no	16 week after full bloom	16.0903
SRR3384912	fruit	no	18 week after full bloom	20.1917
SRR3384911	fruit	no	19 week after full bloom	17.9629
SRR3384910	fruit	no	20 week after full bloom	20.1297
SRR768128	whole fruit	no	25 days post anthesis	13.9134
SRR768129	whole fruit	no	35 days post anthesis	12.9069
SRR768130	whole fruit	no	60 days post anthesis	16.6099
SRR768131	whole fruit	no	87 days post anthesis	12.9427
SRR7343308	immature fruit flesh	no	immature	19.0222
SRR7343309	immature fruit flesh	no	immature	22.4048
SRR6320494	ripe fruit flesh	no	mature	31.3215
SRR5405143	ripe fruit peel	no	mature	24.8928
SRR6320572	ripe fruit peel	no	mature	29.2297
SRR7403504	fruit	uninfected	mature	26.9047
SRR7403506	fruit	uninfected	mature	25.6036
SRR7403507	fruit	uninfected	mature	27.0548
SRR7403500	fruit	infected with penicillium expansum	mature	42.343
SRR7403501	fruit	infected with penicillium expansum	mature	40.1297
SRR7403508	fruit	infected with penicillium expansum	mature	39.7877
SRR7403502	fruit	infected with penicillium expansum	mature	30.0725
SRR7403503	fruit	infected with penicillium expansum	mature	32.469
SRR7403505	fruit	infected with penicillium expansum	mature	31.7646
SRR1613973	Central seeds	no	20DAPF	8.12815
SRR1613974	Central seeds	no	20DAPF	7.29413
SRR1613975	Central seeds	no	20DAPF	6.96437
SRR1613976	Lateral seeds	no	20DAPF	7.90517
SRR1613977	Lateral seeds	no	20DAPF	7.7024
SRR1613978	Lateral seeds	no	20DAPF	7.20683
SRR3744786	stem	no	mature	12.7935
SRR3744787	stem	no	mature	13.3536
SRR3744772	stem	no	mature	13.1749
SRX765691	seedling shoot apex	no	4-6 week old seedling	6.83689
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	10.0764
SRR1089478	leaf	Virus-free	plantlets	8.01544
SRR1089477	leaf	ASGV-infected	plantlets	12.0415
SRR767660	leaf	uninfected	fully developed	18.2161
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	30.1398
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	11.4616
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	18.6127
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	14.1758
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	10.0426
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	23.6627
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	14.828
SRR6308182	young leaf	no	immature leaves	7.37694
SRR3744769	leaf	no	mature	27.9856
SRR3744770	leaf	no	mature	27.9689
SRR3744771	leaf	no	mature	27.9305
SRR5405145	leaf	no	mature	28.3597
SRR6320561	leaf	no	mature	28.4523