Gene detail

Detail information of MD17G1096300 Annotation

Gene ID	Annotation
MD17G1096300	Ribosomal protein L6 family

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0330	glutamate-1-semialdehyde 2 transaminase activity aromatic amino acid family biosynthetic process chlorophyll biosynthetic process pentose-phosphate shunt pyridoxal phosphate binding chloroplast stroma chloroplast envelope cell differentiation leaf morphogenesis endonuclease activity rRNA binding cysteine biosynthetic process rRNA processing isopentenyl diphosphate biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD17G1096300	mRNA	Chr17	8131157	8133900	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP032539.1	1	-
Rosa multiflora	Rmu_sc0012414.1_g000013.1	1	-
Rubus occidentalis	Ro06_G06758	1	-
Fragaria vesca	mrna23939.1	1	Ribosomal protein L6 family
Populus trichocarpa	Potri.014G153000.1	1	Ribosomal protein L6 family
Oryza sativa	LOC_Os03g54040.1	1	"ribosomal protein L6, putative, expressed"
Oryza sativa	LOC_Os03g24020.1	0.809	"ribosomal protein L6, putative, expressed"
Zea mays	GRMZM2G170870_P01	1	50S ribosomal protein L6;
Zea mays	GRMZM2G086788_P01	0.829	50S ribosomal protein L6

Gene Ontology

GO term	Description	Category
GO:0019843	rRNA binding	molecular_function
GO:0003735	structural constituent of ribosome	molecular_function
GO:0005840	ribosome	cellular component
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02933	large subunit ribosomal protein L6	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00347.19	Ribosomal_L6	55	127	4.30E-14
PF00347.19	Ribosomal_L6	135	209	1.30E-20

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	247.954
SRR5252888	dormant buds	no	dormant buds(0 month)	13.5032
SRR5252889	dormant buds	no	dormant buds(0 month)	11.4061
SRR5252886	dormant buds	no	dormant buds(1 months)	19.059
SRR5252887	dormant buds	no	dormant buds(1 months)	14.1792
SRR5252884	dormant buds	no	dormant buds(2 months)	17.3875
SRR5252882	dormant buds	no	dormant buds(3 months)	20.4803
SRR5252883	dormant buds	no	dormant buds(3 months)	13.6994
SRR5252880	dormant buds	no	dormant buds(4 months)	22.0585
SRR5252881	dormant buds	no	dormant buds(4 months)	26.9548
SRR5252878	bud break	no	bud break	30.6383
SRR5252879	bud break	no	bud break	39.5625
SRR3744766	flower	no	mature	16.4825
SRR3744767	flower	no	mature	15.6889
SRR3744768	flower	no	mature	18.0646
SRR6308190	stigmas	no	open flowers	16.3501
SRR6308181	styles	no	open flowers	12.8018
SRR6308188	filaments	no	open flowers	17.2527
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	5.48695
SRR6308192	pollen	no	open flowers	3.62159
SRR6308191	petals	no	open flowers	18.2023
SRR6308194	sepals	no	open flowers	38.1765
SRR6308193	receptacles	no	open flowers	14.205
SRR6308189	ovaries	no	open flowers	19.9912
SRR3384922	fruit	no	1 week after full bloom	27.0559
SRR3384921	fruit	no	2 week after full bloom	31.9581
SRR3384920	fruit	no	3 week after full bloom	44.6977
SRR3384919	fruit	no	4 week after full bloom	38.034
SRR3384923	fruit	no	5 week after full bloom	37.9984
SRR3384918	fruit	no	6 week after full bloom	33.4507
SRR3384917	fruit	no	8 week after full bloom	37.8177
SRR3384916	fruit	no	10 week after full bloom	42.2404
SRR3384915	fruit	no	12 week after full bloom	34.5626
SRR3384914	fruit	no	14 week after full bloom	42.2819
SRR3384913	fruit	no	16 week after full bloom	38.4724
SRR3384912	fruit	no	18 week after full bloom	32.7361
SRR3384911	fruit	no	19 week after full bloom	37.758
SRR3384910	fruit	no	20 week after full bloom	31.3816
SRR768128	whole fruit	no	25 days post anthesis	41.7888
SRR768129	whole fruit	no	35 days post anthesis	26.8839
SRR768130	whole fruit	no	60 days post anthesis	18.868
SRR768131	whole fruit	no	87 days post anthesis	16.8847
SRR7343308	immature fruit flesh	no	immature	11.2321
SRR7343309	immature fruit flesh	no	immature	16.829
SRR6320494	ripe fruit flesh	no	mature	23.4371
SRR5405143	ripe fruit peel	no	mature	18.2694
SRR6320572	ripe fruit peel	no	mature	17.3831
SRR7403504	fruit	uninfected	mature	39.0137
SRR7403506	fruit	uninfected	mature	39.0461
SRR7403507	fruit	uninfected	mature	39.4362
SRR7403500	fruit	infected with penicillium expansum	mature	5.70752
SRR7403501	fruit	infected with penicillium expansum	mature	5.04156
SRR7403508	fruit	infected with penicillium expansum	mature	5.23357
SRR7403502	fruit	infected with penicillium expansum	mature	6.96865
SRR7403503	fruit	infected with penicillium expansum	mature	5.27264
SRR7403505	fruit	infected with penicillium expansum	mature	5.52938
SRR1613973	Central seeds	no	20DAPF	13.8567
SRR1613974	Central seeds	no	20DAPF	15.228
SRR1613975	Central seeds	no	20DAPF	16.1559
SRR1613976	Lateral seeds	no	20DAPF	14.7143
SRR1613977	Lateral seeds	no	20DAPF	14.6532
SRR1613978	Lateral seeds	no	20DAPF	13.9898
SRR3744786	stem	no	mature	9.05788
SRR3744787	stem	no	mature	8.39819
SRR3744772	stem	no	mature	7.84961
SRX765691	seedling shoot apex	no	4-6 week old seedling	19.4752
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	21.8476
SRR1089478	leaf	Virus-free	plantlets	42.2647
SRR1089477	leaf	ASGV-infected	plantlets	47.4177
SRR767660	leaf	uninfected	fully developed	135.67
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	99.713
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	122.351
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	109.272
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	32.0574
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	26.4376
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	38.4045
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	50.1747
SRR6308182	young leaf	no	immature leaves	24.6431
SRR3744769	leaf	no	mature	24.5218
SRR3744770	leaf	no	mature	25.2587
SRR3744771	leaf	no	mature	25.1263
SRR5405145	leaf	no	mature	35.6499
SRR6320561	leaf	no	mature	37.1355