Gene detail

Detail information of MD17G1173100 Annotation

Gene ID	Annotation
MD17G1173100	mitogen-activated protein kinase kinase 4

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD17G1173100	mRNA	Chr17	17873684	17874760	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:4.1.3

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP005074.1	1	-
Pyrus x bretschneideri	Pbr030492.1	1	-
Vitis vinifera	GSVIVT01016115001	1	mitogen-activated protein kinase kinase 4
Populus trichocarpa	Potri.008G009800.1	1	mitogen-activated protein kinase kinase 4
Populus trichocarpa	Potri.010G249300.1	0.613	mitogen-activated protein kinase kinase 4
Nicotiana benthamiana	Niben101Scf01283g02011.1	1	Serine/threonine-protein kinase 10
Oryza sativa	LOC_Os02g54600.1	1	"STE_MEK_ste7_MAP2K.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"
Oryza sativa	LOC_Os06g09180.1	1	"OsMKK5 - putative MAPKK based on amino acid sequence homology, expressed"
Zea mays	GRMZM5G834697_P01	1	Putative MAP kinase family protein

Gene Ontology

GO term	Description	Category
GO:0004674	protein serine/threonine kinase activity	molecular_function
GO:0004713	protein tyrosine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006468	protein phosphorylation	biological_process

KEGG

KO	Description	Enzyme
K13413	mitogen-activated protein kinase kinase 4/5	EC:2.7.12.2

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.21	Pkinase	76	331	3.50E-64

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.67488
SRR5252888	dormant buds	no	dormant buds(0 month)	0.769604
SRR5252889	dormant buds	no	dormant buds(0 month)	0.990605
SRR5252886	dormant buds	no	dormant buds(1 months)	0.651753
SRR5252887	dormant buds	no	dormant buds(1 months)	0.92358
SRR5252884	dormant buds	no	dormant buds(2 months)	0.18437
SRR5252882	dormant buds	no	dormant buds(3 months)	0.739651
SRR5252883	dormant buds	no	dormant buds(3 months)	1.10822
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0.204837
SRR5252878	bud break	no	bud break	0.735247
SRR5252879	bud break	no	bud break	0.815309
SRR3744766	flower	no	mature	9.99985
SRR3744767	flower	no	mature	10.3251
SRR3744768	flower	no	mature	11.1152
SRR6308190	stigmas	no	open flowers	2.46768
SRR6308181	styles	no	open flowers	3.98704
SRR6308188	filaments	no	open flowers	1.12652
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	3.86127
SRR6308192	pollen	no	open flowers	9.92894
SRR6308191	petals	no	open flowers	3.20167
SRR6308194	sepals	no	open flowers	2.94847
SRR6308193	receptacles	no	open flowers	2.22727
SRR6308189	ovaries	no	open flowers	3.21545
SRR3384922	fruit	no	1 week after full bloom	3.89554
SRR3384921	fruit	no	2 week after full bloom	3.27964
SRR3384920	fruit	no	3 week after full bloom	5.19801
SRR3384919	fruit	no	4 week after full bloom	6.0218
SRR3384923	fruit	no	5 week after full bloom	6.88651
SRR3384918	fruit	no	6 week after full bloom	6.69776
SRR3384917	fruit	no	8 week after full bloom	7.45626
SRR3384916	fruit	no	10 week after full bloom	6.43231
SRR3384915	fruit	no	12 week after full bloom	4.74546
SRR3384914	fruit	no	14 week after full bloom	6.42601
SRR3384913	fruit	no	16 week after full bloom	4.50035
SRR3384912	fruit	no	18 week after full bloom	7.48684
SRR3384911	fruit	no	19 week after full bloom	7.64106
SRR3384910	fruit	no	20 week after full bloom	6.63147
SRR768128	whole fruit	no	25 days post anthesis	1.35075
SRR768129	whole fruit	no	35 days post anthesis	5.59098
SRR768130	whole fruit	no	60 days post anthesis	8.79989
SRR768131	whole fruit	no	87 days post anthesis	3.45587
SRR7343308	immature fruit flesh	no	immature	10.2396
SRR7343309	immature fruit flesh	no	immature	12.2711
SRR6320494	ripe fruit flesh	no	mature	3.89131
SRR5405143	ripe fruit peel	no	mature	13.4836
SRR6320572	ripe fruit peel	no	mature	10.4632
SRR7403504	fruit	uninfected	mature	6.71574
SRR7403506	fruit	uninfected	mature	6.68882
SRR7403507	fruit	uninfected	mature	6.01655
SRR7403500	fruit	infected with penicillium expansum	mature	15.2495
SRR7403501	fruit	infected with penicillium expansum	mature	10.3031
SRR7403508	fruit	infected with penicillium expansum	mature	14.1916
SRR7403502	fruit	infected with penicillium expansum	mature	9.94676
SRR7403503	fruit	infected with penicillium expansum	mature	9.2772
SRR7403505	fruit	infected with penicillium expansum	mature	12.5601
SRR1613973	Central seeds	no	20DAPF	0.437108
SRR1613974	Central seeds	no	20DAPF	0.459288
SRR1613975	Central seeds	no	20DAPF	0.887367
SRR1613976	Lateral seeds	no	20DAPF	0.491924
SRR1613977	Lateral seeds	no	20DAPF	0.67327
SRR1613978	Lateral seeds	no	20DAPF	0.492953
SRR3744786	stem	no	mature	7.78811
SRR3744787	stem	no	mature	8.35015
SRR3744772	stem	no	mature	9.20463
SRX765691	seedling shoot apex	no	4-6 week old seedling	4.56005
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.74183
SRR1089478	leaf	Virus-free	plantlets	1.49044
SRR1089477	leaf	ASGV-infected	plantlets	1.92687
SRR767660	leaf	uninfected	fully developed	1.51076
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.84483
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	4.33791
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	4.18609
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	6.09458
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	8.84121
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.21117
SRR6308182	young leaf	no	immature leaves	2.70084
SRR3744769	leaf	no	mature	9.3805
SRR3744770	leaf	no	mature	9.27165
SRR3744771	leaf	no	mature	10.051
SRR5405145	leaf	no	mature	4.13942
SRR6320561	leaf	no	mature	3.6746