Gene detail

Detail information of MD17G1209000 Annotation

Gene ID	Annotation
MD17G1209000	Integrase-type DNA-binding superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0002	extracellular region

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD17G1209000	mRNA	Chr17	25366430	25367602	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	ERF

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G15360.1	1	AtSHN1;SHN1;WIN1\|SHINE 1;WAX INDUCER 1
Prunus persica	Prupe.3G084600.1.p	1	Integrase-type DNA-binding superfamily protein
Pyrus communis	PCP018733.1	1	-
Pyrus x bretschneideri	Pbr002108.1	1	-
Rosa multiflora	Rmu_sc0004243.1_g000002.1	1	-
Rubus occidentalis	Ro06_G27385	1	-
Fragaria vesca	mrna27092.1	1	Integrase-type DNA-binding superfamily protein
Vitis vinifera	GSVIVT01017315001	1	Integrase-type DNA-binding superfamily protein
Populus trichocarpa	Potri.003G033000.1	1	Integrase-type DNA-binding superfamily protein
Nicotiana benthamiana	Niben101Scf09882g01001.1	1	Ethylene-responsive transcription factor 7
Nicotiana benthamiana	Niben101Ctg12291g00001.1	0.66	Ethylene-responsive transcription factor 10
Oryza sativa	LOC_Os02g10760.1	1	"AP2 domain containing protein, expressed"
Zea mays	GRMZM2G085678_P01	1	Ethylene responsive element

Gene Ontology

GO term	Description	Category
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function
GO:0003677	DNA binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.16	AP2	6	53	9.60E-12

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0.401086
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0.222151
SRR5252878	bud break	no	bud break	0.398698
SRR5252879	bud break	no	bud break	1.10528
SRR3744766	flower	no	mature	13.0309
SRR3744767	flower	no	mature	8.63661
SRR3744768	flower	no	mature	11.3887
SRR6308190	stigmas	no	open flowers	17.9721
SRR6308181	styles	no	open flowers	28.8657
SRR6308188	filaments	no	open flowers	86.2346
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	4.43407
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	18.0933
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	1.81313
SRR6308189	ovaries	no	open flowers	20.7799
SRR3384922	fruit	no	1 week after full bloom	0
SRR3384921	fruit	no	2 week after full bloom	0
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0.157296
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0.656824
SRR3384915	fruit	no	12 week after full bloom	1.55429
SRR3384914	fruit	no	14 week after full bloom	2.82646
SRR3384913	fruit	no	16 week after full bloom	3.77297
SRR3384912	fruit	no	18 week after full bloom	2.08279
SRR3384911	fruit	no	19 week after full bloom	2.39716
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0
SRR768129	whole fruit	no	35 days post anthesis	0.491083
SRR768130	whole fruit	no	60 days post anthesis	0.823347
SRR768131	whole fruit	no	87 days post anthesis	0.61974
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.413877
SRR7403506	fruit	uninfected	mature	0.437201
SRR7403507	fruit	uninfected	mature	0.129775
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.165047
SRR1613974	Central seeds	no	20DAPF	0.52916
SRR1613975	Central seeds	no	20DAPF	0.461839
SRR1613976	Lateral seeds	no	20DAPF	0.323863
SRR1613977	Lateral seeds	no	20DAPF	0.375802
SRR1613978	Lateral seeds	no	20DAPF	0.431491
SRR3744786	stem	no	mature	0.0912608
SRR3744787	stem	no	mature	0
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.246622
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	1.18897
SRR1089478	leaf	Virus-free	plantlets	0.708559
SRR1089477	leaf	ASGV-infected	plantlets	0.274811
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.920262
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	5.64731
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0
SRR3744771	leaf	no	mature	0.0986187
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0