Gene detail

Detail information of MD17G1221200 Annotation

Gene ID	Annotation
MD17G1221200	Mitochondrial glycoprotein family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD17G1221200	mRNA	Chr17	26998252	27000759	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G15870.1	1	Mitochondrial glycoprotein family protein
Prunus persica	Prupe.3G096300.2.p	1	Mitochondrial glycoprotein family protein
Prunus persica	Prupe.3G096300.1.p	1	Mitochondrial glycoprotein family protein
Pyrus communis	PCP044793.1	1	-
Rosa multiflora	Rmu_sc0003874.1_g000009.1	1	-
Rubus occidentalis	Ro06_G27390	1	-
Fragaria vesca	mrna15935.1	1	Mitochondrial glycoprotein family protein
Vitis vinifera	GSVIVT01017565001	1	Mitochondrial glycoprotein family protein
Populus trichocarpa	Potri.001G047600.1	1	Mitochondrial glycoprotein family protein
Nicotiana benthamiana	Niben101Scf06976g01002.1	1	Mitochondrial glycoprotein family protein LENGTH=242
Oryza sativa	LOC_Os08g34130.1	1	"mitochondrial glycoprotein, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0005759	mitochondrial matrix	cellular component

KEGG

KO	Description	Enzyme
K15414	"complement component 1 Q subcomponent-binding protein, mitochondrial;Tissue distribution: peripheral blood cells; Link module: BX7B"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02330.12	MAM33	76	252	3.10E-32

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.81294
SRR5252888	dormant buds	no	dormant buds(0 month)	3.30662
SRR5252889	dormant buds	no	dormant buds(0 month)	2.7553
SRR5252886	dormant buds	no	dormant buds(1 months)	1.03168
SRR5252887	dormant buds	no	dormant buds(1 months)	1.95798
SRR5252884	dormant buds	no	dormant buds(2 months)	1.25076
SRR5252882	dormant buds	no	dormant buds(3 months)	3.88878
SRR5252883	dormant buds	no	dormant buds(3 months)	3.9641
SRR5252880	dormant buds	no	dormant buds(4 months)	5.75895
SRR5252881	dormant buds	no	dormant buds(4 months)	3.82142
SRR5252878	bud break	no	bud break	5.36199
SRR5252879	bud break	no	bud break	7.19035
SRR3744766	flower	no	mature	0.789299
SRR3744767	flower	no	mature	0.621969
SRR3744768	flower	no	mature	0.857843
SRR6308190	stigmas	no	open flowers	0.198788
SRR6308181	styles	no	open flowers	0.683576
SRR6308188	filaments	no	open flowers	1.02731
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.794328
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	2.74241
SRR6308194	sepals	no	open flowers	1.38214
SRR6308193	receptacles	no	open flowers	2.71317
SRR6308189	ovaries	no	open flowers	1.03341
SRR3384922	fruit	no	1 week after full bloom	2.2314
SRR3384921	fruit	no	2 week after full bloom	2.03398
SRR3384920	fruit	no	3 week after full bloom	1.84692
SRR3384919	fruit	no	4 week after full bloom	3.10233
SRR3384923	fruit	no	5 week after full bloom	4.52378
SRR3384918	fruit	no	6 week after full bloom	1.75162
SRR3384917	fruit	no	8 week after full bloom	2.21277
SRR3384916	fruit	no	10 week after full bloom	3.18256
SRR3384915	fruit	no	12 week after full bloom	2.49014
SRR3384914	fruit	no	14 week after full bloom	2.94522
SRR3384913	fruit	no	16 week after full bloom	2.15076
SRR3384912	fruit	no	18 week after full bloom	2.60436
SRR3384911	fruit	no	19 week after full bloom	2.31055
SRR3384910	fruit	no	20 week after full bloom	2.6892
SRR768128	whole fruit	no	25 days post anthesis	1.48349
SRR768129	whole fruit	no	35 days post anthesis	3.72364
SRR768130	whole fruit	no	60 days post anthesis	2.60126
SRR768131	whole fruit	no	87 days post anthesis	2.44749
SRR7343308	immature fruit flesh	no	immature	1.73489
SRR7343309	immature fruit flesh	no	immature	2.07773
SRR6320494	ripe fruit flesh	no	mature	1.32605
SRR5405143	ripe fruit peel	no	mature	1.55056
SRR6320572	ripe fruit peel	no	mature	0.861227
SRR7403504	fruit	uninfected	mature	2.54223
SRR7403506	fruit	uninfected	mature	2.03133
SRR7403507	fruit	uninfected	mature	2.57538
SRR7403500	fruit	infected with penicillium expansum	mature	1.01085
SRR7403501	fruit	infected with penicillium expansum	mature	2.0001
SRR7403508	fruit	infected with penicillium expansum	mature	1.08139
SRR7403502	fruit	infected with penicillium expansum	mature	2.99593
SRR7403503	fruit	infected with penicillium expansum	mature	3.19058
SRR7403505	fruit	infected with penicillium expansum	mature	2.30835
SRR1613973	Central seeds	no	20DAPF	5.93565
SRR1613974	Central seeds	no	20DAPF	6.18306
SRR1613975	Central seeds	no	20DAPF	5.14447
SRR1613976	Lateral seeds	no	20DAPF	5.1794
SRR1613977	Lateral seeds	no	20DAPF	4.96351
SRR1613978	Lateral seeds	no	20DAPF	5.92029
SRR3744786	stem	no	mature	1.19108
SRR3744787	stem	no	mature	1.04461
SRR3744772	stem	no	mature	1.30902
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.25519
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.14585
SRR1089478	leaf	Virus-free	plantlets	0.789442
SRR1089477	leaf	ASGV-infected	plantlets	0.612362
SRR767660	leaf	uninfected	fully developed	1.02942
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	4.67566
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.661051
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	4.43291
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.33856
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.691436
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.45845
SRR6308182	young leaf	no	immature leaves	3.56012
SRR3744769	leaf	no	mature	0.580731
SRR3744770	leaf	no	mature	0.407878
SRR3744771	leaf	no	mature	0.545339
SRR5405145	leaf	no	mature	1.20529
SRR6320561	leaf	no	mature	3.54432