Gene detail

Detail information of MD17G1233500 Annotation

Gene ID	Annotation
MD17G1233500	TCP family transcription factor 4

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0245	E3 ubiquitin-protein ligase MUL1 [EC:2.3.2.27] gibberellin 20-oxidase [EC:1.14.11.12]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD17G1233500	mRNA	Chr17	28210166	28212381	+

Sequences

CDS:

MD17G1233500

TTTTAATTCATTTTCTGTTTTCTTTCTCTTTAAATTCGGTGGTTCTGTGGCCACAGAAAAACTCACCCACCAATAGTCTCTCTGCACACCCGTCATCAGTGTATCATTAATTGGATACACCACTTCAACCGTGCACACAAGAATCTCTCCTTTTTATGGACCAAGAAGTTAGTTACCTTATCTATAAACCTGTAGGATCAAAAGTGGTGTAAAATTTCTGTGCCTGCAGCCTGTGAAGTGTGGATTTTTGTAGCGTCTATTGGGGTTTGGAATCTGGTCTGGTGAGTTTTCGGGATTAGCAGCAGCAGCAGCAGAAGCAGATAGTGTTAGAATTGTGACGGCAACGGCCACACTCAACCAAAACAATTAGCAGAAAATAATACCAAAAAAAAAAAAGGAGAGAATAATATGGGAATGGAGGGTTGTGGGGGAGAGATTGTAGAAGTCCAAGGCGGCCACATTGTTCGATCCACCGGACGCAAAGACCGTCACAGCAAGATTTACACCGCCAAAGGCCCCAGAGACCGCCGTGTCCGGTTGTCCGCCCACACTGCCATCCAATTCTATGATGTTCAAGACCGCCTCGGATATGATAGACCCAGTAAAGCCGTGGACTGGCTCATCAAGAAGGCCAAATCTTCCATTGACAAGCTCGTTGAGCTTCCACCTTGGCATCCTATCACTACTAGTAACCATGCTGCCGAAGCTGATGATCCGTTTCGATCATCAAATCCAAATCCAAATGGACCAAATCCAAATGATATGGTAATTGCCGCAGCTGAGCAGCAATCAGAGTCCTCCACCAGCTACAACTTTAACTTTGAGCTCCAAAGGCAAAGGCAATCAGACAACGATTCGAACTTCAACATTCCGCCATCTCTAGACTCAGACAACATAGCTGACACCATGAAGTCCTTCTTCCCCACAAACACTAGTAGCAACGCCGCCGCTGCTTCCTCCGTTGACGATTTCCGTAGTTACCCAACCGATCCCCATCTAATTTCAGCAACTACCCAAGACCTTGGCCTCTCTCTCCACTCTTTCCAAGACCAAGGCCTAAACATTCATCACAATCACACTCACACTCAGCAGTCCTCTCAAGCCCTTTTCGCCGCCGCAGTGGGAACTGGATTTGACTCCTCCAGTTATCAGAGAATGGTGGCATGGAGCAATGAAAACAGAGGACTTGATGGGGGCTTTGTATTCAACTCACACTCTCACTCATATTCTCAGCCTCAGCCTCACAATCATGGGGGTGATGGGAATCATGGGAGTACCCTTCAGTCCAGTTTTACGCCATCAGTTTCCACACGCGCTTGGCAGCAGCAGCACTCTTCAATCTTTGGCACCCGCTTCGGCACCTCTGACGGCACCTCGCCTGTCTTCTGCATTCAAGGTGAGGAGGCTGAGAATGGTACTATTTCAGATCGACCGTCTTCCACTTCCTCTCTCAATTCAACCCGCCAGCTTTGACATCATCCATCTTCATTTTCTACTAGATTTTGCAGATTCTACGTAGTTAAGAAAGATTAAGTCCAACTGAATGGTCTGCCGAGGAAAAGCAAAGAAAAGAACAGTAACTGGTTTGAGTTTCAAACATTCTTTTCTTCTTTGTTTATTTAGGTGGGGCAGATTCGTTTGGCTCAGTTTTTTTTATTTATATTATGTTTTCGAATACTTGTGGTAACCGTGACACATGGTTAACGAGGATGTTTCCGTACGTCATGGTTATGTTACTGCTTATGATCCTGTAGAAATTCCCCTTTACTTTAATTTGGTTCAACTGTTCTATAACAGCAAAGTTGTTTCGTTCTTTTCTCGGTTTTTTTCCACATCAAGGGAAGCACTAGTTAGTCAATGGCTTGCTTCATCCTCATCTGTTGTGGAAACTGGAAACAAGCTTCCTTCCACAACCAACCTAAGTACAATTTATGTAAGTAATACGTATACATCTACGTACATACATGGAGTATTTGATTTTTGTAATCTTTCAATGAATTATTA

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	TCP

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.3G124900.2.p	1	TCP family transcription factor 4
Prunus persica	Prupe.3G124900.3.p	1	TCP family transcription factor 4
Prunus persica	Prupe.3G124900.1.p	1	TCP family transcription factor 4
Pyrus communis	PCP001915.1	1	-
Pyrus x bretschneideri	Pbr022498.1	1	-
Rosa multiflora	Rmu_sc0001643.1_g000009.1	1	-
Fragaria vesca	mrna17805.1	1	TCP family transcription factor 4
Populus trichocarpa	Potri.013G119400.1	1	TCP family transcription factor 4
Populus trichocarpa	Potri.019G091300.1	0.754	TCP family transcription factor 4

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.26985
SRR5252888	dormant buds	no	dormant buds(0 month)	1.23663
SRR5252889	dormant buds	no	dormant buds(0 month)	0.811791
SRR5252886	dormant buds	no	dormant buds(1 months)	1.67562
SRR5252887	dormant buds	no	dormant buds(1 months)	0.500866
SRR5252884	dormant buds	no	dormant buds(2 months)	0.888759
SRR5252882	dormant buds	no	dormant buds(3 months)	2.31758
SRR5252883	dormant buds	no	dormant buds(3 months)	0.534219
SRR5252880	dormant buds	no	dormant buds(4 months)	2.57984
SRR5252881	dormant buds	no	dormant buds(4 months)	1.5305
SRR5252878	bud break	no	bud break	3.72149
SRR5252879	bud break	no	bud break	3.43894
SRR3744766	flower	no	mature	1.50418
SRR3744767	flower	no	mature	1.60737
SRR3744768	flower	no	mature	1.433
SRR6308190	stigmas	no	open flowers	3.3385
SRR6308181	styles	no	open flowers	5.50113
SRR6308188	filaments	no	open flowers	1.28387
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.93557
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	1.09803
SRR6308194	sepals	no	open flowers	1.90018
SRR6308193	receptacles	no	open flowers	0.181858
SRR6308189	ovaries	no	open flowers	2.7594
SRR3384922	fruit	no	1 week after full bloom	1.12652
SRR3384921	fruit	no	2 week after full bloom	0.812924
SRR3384920	fruit	no	3 week after full bloom	0.0397663
SRR3384919	fruit	no	4 week after full bloom	0.257168
SRR3384923	fruit	no	5 week after full bloom	0.139751
SRR3384918	fruit	no	6 week after full bloom	0.544501
SRR3384917	fruit	no	8 week after full bloom	0.0561514
SRR3384916	fruit	no	10 week after full bloom	0.0729452
SRR3384915	fruit	no	12 week after full bloom	0.043154
SRR3384914	fruit	no	14 week after full bloom	0.0418532
SRR3384913	fruit	no	16 week after full bloom	0.0492961
SRR3384912	fruit	no	18 week after full bloom	0.0462619
SRR3384911	fruit	no	19 week after full bloom	0.133112
SRR3384910	fruit	no	20 week after full bloom	0.0347409
SRR768128	whole fruit	no	25 days post anthesis	0.603168
SRR768129	whole fruit	no	35 days post anthesis	0.772762
SRR768130	whole fruit	no	60 days post anthesis	0.27763
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0.245817
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.139088
SRR7403506	fruit	uninfected	mature	0.146926
SRR7403507	fruit	uninfected	mature	0.0581501
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	2.76846
SRR1613974	Central seeds	no	20DAPF	2.94724
SRR1613975	Central seeds	no	20DAPF	2.58226
SRR1613976	Lateral seeds	no	20DAPF	2.55103
SRR1613977	Lateral seeds	no	20DAPF	2.93884
SRR1613978	Lateral seeds	no	20DAPF	2.56472
SRR3744786	stem	no	mature	0.229262
SRR3744787	stem	no	mature	0.340145
SRR3744772	stem	no	mature	0.263867
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.10781
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.15676
SRR1089478	leaf	Virus-free	plantlets	5.46211
SRR1089477	leaf	ASGV-infected	plantlets	7.47688
SRR767660	leaf	uninfected	fully developed	7.0901
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	20.5859
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	8.20774
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.05269
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.45834
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.05079
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.98729
SRR6308182	young leaf	no	immature leaves	10.1835
SRR3744769	leaf	no	mature	1.17242
SRR3744770	leaf	no	mature	1.35524
SRR3744771	leaf	no	mature	2.34434
SRR5405145	leaf	no	mature	4.85764
SRR6320561	leaf	no	mature	2.84567