Gene detail

Detail information of MD17G1278700 Annotation

Gene ID	Annotation
MD17G1278700	Tetratricopeptide repeat (TPR)-like superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD17G1278700	mRNA	Chr17	33858846	33860395	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.3G007300.1.p	1	Pentatricopeptide repeat (PPR) superfamily protein
Pyrus communis	PCP026953.1	1	-
Rosa multiflora	Rmu_sc0005856.1_g000034.1	1	-
Fragaria vesca	mrna20574.1	1	Tetratricopeptide repeat (TPR)-like superfamily protein
Vitis vinifera	GSVIVT01028154001	1	Pentatricopeptide repeat (PPR) superfamily protein
Solanum lycopersicum	Solyc06g009500.1.1	1	Tetratricopeptide repeat (TPR)-like superfamily protein

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.438329
SRR5252888	dormant buds	no	dormant buds(0 month)	0.331388
SRR5252889	dormant buds	no	dormant buds(0 month)	0.511861
SRR5252886	dormant buds	no	dormant buds(1 months)	0.561284
SRR5252887	dormant buds	no	dormant buds(1 months)	0.372834
SRR5252884	dormant buds	no	dormant buds(2 months)	0.476333
SRR5252882	dormant buds	no	dormant buds(3 months)	0.358302
SRR5252883	dormant buds	no	dormant buds(3 months)	0.71579
SRR5252880	dormant buds	no	dormant buds(4 months)	0.357588
SRR5252881	dormant buds	no	dormant buds(4 months)	1.12457
SRR5252878	bud break	no	bud break	0.712337
SRR5252879	bud break	no	bud break	0.526603
SRR3744766	flower	no	mature	0.17515
SRR3744767	flower	no	mature	0.219026
SRR3744768	flower	no	mature	0.15422
SRR6308190	stigmas	no	open flowers	0.189442
SRR6308181	styles	no	open flowers	0.0814428
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0.202652
SRR6308193	receptacles	no	open flowers	0.0808064
SRR6308189	ovaries	no	open flowers	0.0656638
SRR3384922	fruit	no	1 week after full bloom	0.223627
SRR3384921	fruit	no	2 week after full bloom	0.121031
SRR3384920	fruit	no	3 week after full bloom	0.21314
SRR3384919	fruit	no	4 week after full bloom	0.147683
SRR3384923	fruit	no	5 week after full bloom	0.18726
SRR3384918	fruit	no	6 week after full bloom	0.156344
SRR3384917	fruit	no	8 week after full bloom	0.0752403
SRR3384916	fruit	no	10 week after full bloom	0.0488717
SRR3384915	fruit	no	12 week after full bloom	0.346947
SRR3384914	fruit	no	14 week after full bloom	0.0560815
SRR3384913	fruit	no	16 week after full bloom	0.0660546
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0.139654
SRR768128	whole fruit	no	25 days post anthesis	0.26909
SRR768129	whole fruit	no	35 days post anthesis	0
SRR768130	whole fruit	no	60 days post anthesis	0.247718
SRR768131	whole fruit	no	87 days post anthesis	0.186459
SRR7343308	immature fruit flesh	no	immature	0.330319
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0.273628
SRR7403504	fruit	uninfected	mature	0.341395
SRR7403506	fruit	uninfected	mature	0.262279
SRR7403507	fruit	uninfected	mature	0.233559
SRR7403500	fruit	infected with penicillium expansum	mature	0.0802139
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0.13269
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0.0666088
SRR1613973	Central seeds	no	20DAPF	1.651
SRR1613974	Central seeds	no	20DAPF	1.35196
SRR1613975	Central seeds	no	20DAPF	1.80439
SRR1613976	Lateral seeds	no	20DAPF	0.736288
SRR1613977	Lateral seeds	no	20DAPF	1.58533
SRR1613978	Lateral seeds	no	20DAPF	1.48236
SRR3744786	stem	no	mature	0.334672
SRR3744787	stem	no	mature	0.254713
SRR3744772	stem	no	mature	0.381067
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.20979
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.172512
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0.653691
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.787457
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.141706
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.164722
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.138916
SRR6308182	young leaf	no	immature leaves	0.067862
SRR3744769	leaf	no	mature	0.105218
SRR3744770	leaf	no	mature	0.193905
SRR3744771	leaf	no	mature	0.0272855
SRR5405145	leaf	no	mature	0.191286
SRR6320561	leaf	no	mature	0.281411