Gene detail

Detail information of MD00G1008400 Annotation

Gene ID	Annotation
MD00G1008400	ER lumen protein retaining receptor family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0652	U4/U6.U5 tri-snRNP-associated protein 1 20S proteasome subunit alpha 5 [EC:3.4.25.1] ER lumen protein retaining receptor KDEL sequence binding ribose phosphate diphosphokinase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD00G1008400	mRNA	Chr00	1088696	1091673	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G29330.1	1	AERD2;ATERD2;ERD2\|ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2;ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2;ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2
Prunus persica	Prupe.4G067600.1.p	1	ER lumen protein retaining receptor family protein
Pyrus communis	PCP044828.1	1	-
Pyrus x bretschneideri	Pbr000533.1	1	-
Rosa multiflora	Rmu_sc0001475.1_g000009.1	1	-
Rubus occidentalis	Ro03_G05296	1	-
Vitis vinifera	GSVIVT01021262001	1	ER lumen protein retaining receptor family protein
Solanum lycopersicum	Solyc02g072120.2.1	1	ER lumen protein retaining receptor family protein
Populus trichocarpa	Potri.011G071200.1	1	ER lumen protein retaining receptor family protein
Nicotiana benthamiana	Niben101Scf07261g00003.1	1	ER lumen protein-retaining receptor A
Nicotiana benthamiana	Niben101Scf05948g07012.1	0.879	ER lumen protein-retaining receptor A
Oryza sativa	LOC_Os05g45310.1	1	"ER lumen protein retaining receptor, putative, expressed"
Zea mays	GRMZM2G408989_P01	1	ER lumen protein retaining receptor
Zea mays	GRMZM2G101413_P01	1	ER lumen protein retaining receptor

Gene Ontology

GO term	Description	Category
GO:0016021	integral component of membrane	cellular component
GO:0006621	protein retention in ER lumen	biological_process
GO:0046923	ER retention sequence binding	molecular_function

KEGG

KO	Description	Enzyme
K10949	ER lumen protein retaining receptor	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.16757
SRR5252888	dormant buds	no	dormant buds(0 month)	3.44225
SRR5252889	dormant buds	no	dormant buds(0 month)	4.73534
SRR5252886	dormant buds	no	dormant buds(1 months)	6.01245
SRR5252887	dormant buds	no	dormant buds(1 months)	5.80914
SRR5252884	dormant buds	no	dormant buds(2 months)	4.02012
SRR5252882	dormant buds	no	dormant buds(3 months)	2.94643
SRR5252883	dormant buds	no	dormant buds(3 months)	3.5486
SRR5252880	dormant buds	no	dormant buds(4 months)	3.09533
SRR5252881	dormant buds	no	dormant buds(4 months)	3.95104
SRR5252878	bud break	no	bud break	1.69567
SRR5252879	bud break	no	bud break	2.56407
SRR3744766	flower	no	mature	3.40125
SRR3744767	flower	no	mature	3.35419
SRR3744768	flower	no	mature	2.6044
SRR6308190	stigmas	no	open flowers	5.01441
SRR6308181	styles	no	open flowers	4.30743
SRR6308188	filaments	no	open flowers	4.42683
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	3.41845
SRR6308192	pollen	no	open flowers	4.64264
SRR6308191	petals	no	open flowers	1.34929
SRR6308194	sepals	no	open flowers	2.22337
SRR6308193	receptacles	no	open flowers	5.006
SRR6308189	ovaries	no	open flowers	3.81228
SRR3384922	fruit	no	1 week after full bloom	6.098
SRR3384921	fruit	no	2 week after full bloom	3.45751
SRR3384920	fruit	no	3 week after full bloom	2.35249
SRR3384919	fruit	no	4 week after full bloom	2.62081
SRR3384923	fruit	no	5 week after full bloom	3.03947
SRR3384918	fruit	no	6 week after full bloom	4.26328
SRR3384917	fruit	no	8 week after full bloom	2.34479
SRR3384916	fruit	no	10 week after full bloom	1.9038
SRR3384915	fruit	no	12 week after full bloom	2.62798
SRR3384914	fruit	no	14 week after full bloom	3.20416
SRR3384913	fruit	no	16 week after full bloom	2.23007
SRR3384912	fruit	no	18 week after full bloom	1.93182
SRR3384911	fruit	no	19 week after full bloom	3.31968
SRR3384910	fruit	no	20 week after full bloom	2.41788
SRR768128	whole fruit	no	25 days post anthesis	2.44254
SRR768129	whole fruit	no	35 days post anthesis	3.54442
SRR768130	whole fruit	no	60 days post anthesis	4.01524
SRR768131	whole fruit	no	87 days post anthesis	2.17606
SRR7343308	immature fruit flesh	no	immature	2.5749
SRR7343309	immature fruit flesh	no	immature	4.71281
SRR6320494	ripe fruit flesh	no	mature	2.04437
SRR5405143	ripe fruit peel	no	mature	2.64104
SRR6320572	ripe fruit peel	no	mature	1.76468
SRR7403504	fruit	uninfected	mature	1.69093
SRR7403506	fruit	uninfected	mature	1.82876
SRR7403507	fruit	uninfected	mature	2.32283
SRR7403500	fruit	infected with penicillium expansum	mature	5.20275
SRR7403501	fruit	infected with penicillium expansum	mature	4.63245
SRR7403508	fruit	infected with penicillium expansum	mature	4.11872
SRR7403502	fruit	infected with penicillium expansum	mature	3.27043
SRR7403503	fruit	infected with penicillium expansum	mature	3.55668
SRR7403505	fruit	infected with penicillium expansum	mature	3.45625
SRR1613973	Central seeds	no	20DAPF	12.6601
SRR1613974	Central seeds	no	20DAPF	11.4734
SRR1613975	Central seeds	no	20DAPF	10.3577
SRR1613976	Lateral seeds	no	20DAPF	11.5415
SRR1613977	Lateral seeds	no	20DAPF	11.5477
SRR1613978	Lateral seeds	no	20DAPF	12.633
SRR3744786	stem	no	mature	3.43241
SRR3744787	stem	no	mature	4.06346
SRR3744772	stem	no	mature	3.32192
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.97659
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.14977
SRR1089478	leaf	Virus-free	plantlets	4.4528
SRR1089477	leaf	ASGV-infected	plantlets	3.34605
SRR767660	leaf	uninfected	fully developed	1.26978
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.16896
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	7.2913
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	5.49601
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	3.8298
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	5.21753
SRR6308182	young leaf	no	immature leaves	5.07894
SRR3744769	leaf	no	mature	3.88082
SRR3744770	leaf	no	mature	2.61057
SRR3744771	leaf	no	mature	3.21741
SRR5405145	leaf	no	mature	1.73704
SRR6320561	leaf	no	mature	1.81919