Gene detail

Detail information of MD00G1036800 Annotation

Gene ID	Annotation
MD00G1036800	white-brown complex homolog protein 11

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0043

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD00G1036800	mRNA	Chr00	6511425	6516185	+

Sequences

CDS:

MD00G1036800

TATATTTGAACTTGCAAGGTTTAAATAACTTTAAATACGACCAGTTGGATATATCTTAGTGCAAAAACCTGCAACGACCTTAACATCCATCCATTGCCATGGAGTTGAATTCTTCGGCTAAAAGTAGTGTTCCAAGATGGACACCAAGTCCAAGCCCAACAAGAACATTATTGTCATCAGATGATGATCATATGCAAAGGCAACAAACCAGAGATTCTGCAGAAGAAGATGATGATGGTGGGAACATATCATTGTCCTGCTCCAGCATGGACAGAATTTTCCCGTTCCGCATTGAGTTTAAAGGCGGTTTGGCTTCGAACTCCGGCAAGGACGTTCGTGAAGCTCCGCCTCTGAGACTGGAATCCGTTGCAAAGCTGAGTTGCGGAAATGATCATCAAAGTAGTGGTGATGGTGTTGATGTCGAAATCAGGTCGAAAAGGAAGGGAGTTTCTTTGACATGGAAGGACCTGTGGGTTGGTGTAGCTGATGGGAAAAATGGGCAAAGAATGATCTTGCAGGAGGTTACAGGGTATGCTCAACCTGGTGAGATGTTGGCTATCATGGGTCCTTCTGGCTCTGGCAAATCTACCCTTTTGGATGCTTTGGCAGGAAGGCTAAGTTCAAACACACAGCAGACCGGGGAGATCTTAATCAATGGCCGTAAAGAAACACTTGCTTTCGGAACATCGGCGTACGTGACTCAAGACGACACTCTAATGACAACATTAACAGTAAGGGAAGCTGTATATTACTCAGCGCAGCTGCAACTGCCCGACTCCATGTCCCAAGCAGAAAAGAAGGAAAGAGCGGAGATGACGATAAGGGAGATGGGGTTGCAAGACTCCATGGACACAAGAATTGGAGGTTGGAGCATAAAAGGACTTAGCGGTGGCCAGAAAAGAAGAGTTAGCATTTGCATTGAAATCTTGACTCGCCCGAAGCTTCTCTTCCTTGATGAGCCTACTAGTGGCCTAGACAGTGCAGCGTCTTACCACGTCATGAACCGCATTGTTAAGCTAGCTCACCGTGATGGAAGGACAGTTATTGCATCGATTCATCAACCTAGCAGTGAGGTTTTCGATCTTTTCCAAAATCTTTGCCTACTCTCCTCTAGTAGGACAGTCTACTTTGGCCTTGCTTCAATGGCAGAACAATTTTTTGCTTCAAATGGATTCCCATGCCCGACTCTGAGAAACCCATCAGATCACTACCTTAGAACTATCAACAAGGATTTTGATGTTGATATCGAACAAGGGCTTGGGGGCAAAACAAGCACAGAAGAAGCGATTAATATTCTCATACAATCATACAAGTATTCAAATATTAACAAGCAAGTTCAGCTGCAGGTAGCTAGTATTTCCCAACAGAAAGGTGGAACTCTAGAGAAGGGAAGTCAAGCCAGCTTCGTAAACCAATGCCTTGTTCTCACAAGGAGATCGTTTGTGAACATGTATCGCGATCTTGGCTACTACTGGCTTCGCCTTGCAATTTACATTGCCTTGTGTTTATGCGTAGGCACTATCTTTTACGACATTGGCTCCACTTTTGGGTCCATACAGGCGAGAGGTTCGATGCTTATGTTTGTTGGAGCATTCTTGACTTTCATGGCAATAGGTGGATTCCCTTCTTTTGTAGAAGACATGAAGATCTTCGGGCGAGAGAGATTGAACGGGCACTATGGTGTTTCGGCATTTGTTGTTGGAAACACGTTTTCCTCCATTCCATACTTGCTCATCATCTCTTTAATTCCCGGAGCTATAGCCTACTACCTTGTCGGTCTTCAAAAGAGCTTTGATCACTTTGCCTATTTTGCATTGCTACTCTTTGTGACCATGATGTTGGTCGAGAGCCTAATGATGATTGTCGCAAGCGTTGTGCCAGATTTCCTCATGGGAATTATTACCGGTGCTGGAATTCAAGGAGTAATGATGCTGAACGGAGGTTTCTTCCGACTACCCAATGACCTCCCTAAGCCCTTCTGGAGATATCCAATGTACTACATTGCATTCCACAAGTACGCAAATGAAGGATTCTACAAAAATGAGTTTGAAGGACTGACATTCCCAAACAATCAAGCAGAAGGATATTCAACAATTAACGGTGAAGAAATTTTACGAAGCGTTTGGCAAGTGCAGATGGGATACTCCAAGTGGGTCGATCTTGCCATTTTGTTTGGAATGGTAATAGTTTACAGGCTCATGTTTCTGGGAATCATAAAGTTCACAGAAAAGGTTGTACCAATCATCAAAGCTCTCATAGTTGCTACTCCGAAGCACTCGAAACAGATCACAGAAAATCCACCCCCCATACCCTCAGATTAAGCAAACTTGTAGTGTGTTTTTGTTAATTTGTAGCACTAAATAGAACATTGTTTGAATGTATTATATATGTACGTGTATTCCAGCTATGGTTGAACGGACTATACCAGAAAGAAAATATTCGAAATTTATTTTACAAAGTATATATATGGAGGAGTTGGAATCCCGTCAATTCCTCTCCACT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.6G191500.1.p	1	white-brown complex homolog protein 11
Pyrus communis	PCP044798.1	1	-
Rosa multiflora	Rmu_sc0001155.1_g000011.1	1	-
Fragaria vesca	mrna16254.1	1	white-brown complex homolog protein 11
Vitis vinifera	GSVIVT01002949001	1	white-brown complex homolog protein 11
Solanum lycopersicum	Solyc11g009100.1.1	1	white-brown complex homolog protein 11
Populus trichocarpa	Potri.005G073100.1	1	white-brown complex homolog protein 11
Nicotiana benthamiana	Niben101Scf00783g02011.1	1	ABC transporter G family member 5
Nicotiana benthamiana	Niben101Scf00783g00006.1	1	ABC transporter G family member 5
Oryza sativa	LOC_Os09g29660.1	1	"white-brown complex homolog protein 11, putative, expressed"
Oryza sativa	LOC_Os12g22284.1	1	"white-brown complex homolog protein 11, putative, expressed"
Zea mays	GRMZM2G096952_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0016887	ATPase activity	molecular_function
GO:0016020	membrane	cellular component
GO:0005524	ATP binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.23	ABC_tran	139	290	4.30E-27

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.58232
SRR5252888	dormant buds	no	dormant buds(0 month)	0.386977
SRR5252889	dormant buds	no	dormant buds(0 month)	0.149431
SRR5252886	dormant buds	no	dormant buds(1 months)	0.327718
SRR5252887	dormant buds	no	dormant buds(1 months)	0.130612
SRR5252884	dormant buds	no	dormant buds(2 months)	0.625764
SRR5252882	dormant buds	no	dormant buds(3 months)	0.209203
SRR5252883	dormant buds	no	dormant buds(3 months)	0.113981
SRR5252880	dormant buds	no	dormant buds(4 months)	0.13919
SRR5252881	dormant buds	no	dormant buds(4 months)	0.0386239
SRR5252878	bud break	no	bud break	0.0693189
SRR5252879	bud break	no	bud break	1.38361
SRR3744766	flower	no	mature	36.0598
SRR3744767	flower	no	mature	37.4732
SRR3744768	flower	no	mature	35.0333
SRR6308190	stigmas	no	open flowers	24.3586
SRR6308181	styles	no	open flowers	41.5595
SRR6308188	filaments	no	open flowers	51.2182
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	12.1184
SRR6308192	pollen	no	open flowers	0.843758
SRR6308191	petals	no	open flowers	315.442
SRR6308194	sepals	no	open flowers	29.5893
SRR6308193	receptacles	no	open flowers	1.7129
SRR6308189	ovaries	no	open flowers	12.3403
SRR3384922	fruit	no	1 week after full bloom	0.163198
SRR3384921	fruit	no	2 week after full bloom	0.0353302
SRR3384920	fruit	no	3 week after full bloom	0.186653
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0.0327415
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.0393507
SRR768129	whole fruit	no	35 days post anthesis	0.0432128
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0.555277
SRR5405143	ripe fruit peel	no	mature	0.107329
SRR6320572	ripe fruit peel	no	mature	0.483777
SRR7403504	fruit	uninfected	mature	0.0544332
SRR7403506	fruit	uninfected	mature	0.0958345
SRR7403507	fruit	uninfected	mature	0.113787
SRR7403500	fruit	infected with penicillium expansum	mature	1.26617
SRR7403501	fruit	infected with penicillium expansum	mature	1.25264
SRR7403508	fruit	infected with penicillium expansum	mature	1.10369
SRR7403502	fruit	infected with penicillium expansum	mature	0.77574
SRR7403503	fruit	infected with penicillium expansum	mature	1.08305
SRR7403505	fruit	infected with penicillium expansum	mature	0.545177
SRR1613973	Central seeds	no	20DAPF	1.29915
SRR1613974	Central seeds	no	20DAPF	1.06703
SRR1613975	Central seeds	no	20DAPF	0.737997
SRR1613976	Lateral seeds	no	20DAPF	1.04941
SRR1613977	Lateral seeds	no	20DAPF	0.900771
SRR1613978	Lateral seeds	no	20DAPF	1.0981
SRR3744786	stem	no	mature	0.193603
SRR3744787	stem	no	mature	0.132546
SRR3744772	stem	no	mature	0.117512
SRX765691	seedling shoot apex	no	4-6 week old seedling	1.12573
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	1.27965
SRR1089478	leaf	Virus-free	plantlets	1.88757
SRR1089477	leaf	ASGV-infected	plantlets	2.14745
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.18534
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.166482
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.162794
SRR6308182	young leaf	no	immature leaves	1.67873
SRR3744769	leaf	no	mature	0.5182
SRR3744770	leaf	no	mature	0.559817
SRR3744771	leaf	no	mature	0.81818
SRR5405145	leaf	no	mature	0.111826
SRR6320561	leaf	no	mature	0.0826453