Gene detail

Detail information of MD00G1202300 Annotation

Gene ID	Annotation
MD00G1202300	Tetratricopeptide repeat (TPR)-like superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0592	chloroplast isoamylase complex zeta DNA polymerase complex isoamylase activity DEAD/H-box RNA helicase binding CBM48 GH13

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD00G1202300	mRNA	Chr00	48311348	48312640	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Rosa multiflora	Rmu_co8325115.1_g000001.1	1	-

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.407247
SRR5252888	dormant buds	no	dormant buds(0 month)	4.71888
SRR5252889	dormant buds	no	dormant buds(0 month)	3.96128
SRR5252886	dormant buds	no	dormant buds(1 months)	2.60626
SRR5252887	dormant buds	no	dormant buds(1 months)	3.2316
SRR5252884	dormant buds	no	dormant buds(2 months)	2.2118
SRR5252882	dormant buds	no	dormant buds(3 months)	3.5493
SRR5252883	dormant buds	no	dormant buds(3 months)	2.09493
SRR5252880	dormant buds	no	dormant buds(4 months)	2.21389
SRR5252881	dormant buds	no	dormant buds(4 months)	2.86689
SRR5252878	bud break	no	bud break	5.73327
SRR5252879	bud break	no	bud break	2.77125
SRR3744766	flower	no	mature	0.591788
SRR3744767	flower	no	mature	0.382131
SRR3744768	flower	no	mature	0.52311
SRR6308190	stigmas	no	open flowers	0.350296
SRR6308181	styles	no	open flowers	0.200643
SRR6308188	filaments	no	open flowers	0.301843
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.128831
SRR6308194	sepals	no	open flowers	0.249746
SRR6308193	receptacles	no	open flowers	0.398312
SRR6308189	ovaries	no	open flowers	0.0808944
SRR3384922	fruit	no	1 week after full bloom	0
SRR3384921	fruit	no	2 week after full bloom	0
SRR3384920	fruit	no	3 week after full bloom	0.131966
SRR3384919	fruit	no	4 week after full bloom	0.0609586
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0.0931702
SRR3384916	fruit	no	10 week after full bloom	0.0605179
SRR3384915	fruit	no	12 week after full bloom	0.0716041
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0.0576445
SRR768128	whole fruit	no	25 days post anthesis	0.416061
SRR768129	whole fruit	no	35 days post anthesis	0
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0.345959
SRR7343308	immature fruit flesh	no	immature	0.818419
SRR7343309	immature fruit flesh	no	immature	0.408498
SRR6320494	ripe fruit flesh	no	mature	0.780282
SRR5405143	ripe fruit peel	no	mature	2.05967
SRR6320572	ripe fruit peel	no	mature	0.674053
SRR7403504	fruit	uninfected	mature	0.307212
SRR7403506	fruit	uninfected	mature	0.121697
SRR7403507	fruit	uninfected	mature	0.0963294
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0.0820902
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.0618371
SRR1613974	Central seeds	no	20DAPF	0.0141612
SRR1613975	Central seeds	no	20DAPF	0.038452
SRR1613976	Lateral seeds	no	20DAPF	0
SRR1613977	Lateral seeds	no	20DAPF	0.0234665
SRR1613978	Lateral seeds	no	20DAPF	0.053888
SRR3744786	stem	no	mature	0.929391
SRR3744787	stem	no	mature	0.91982
SRR3744772	stem	no	mature	1.04393
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.421601
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.572031
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0.167227
SRR3744769	leaf	no	mature	0.654303
SRR3744770	leaf	no	mature	1.17372
SRR3744771	leaf	no	mature	0.646567
SRR5405145	leaf	no	mature	0.473378
SRR6320561	leaf	no	mature	0.520907