Gene detail

Detail information of MD02G1060200 Annotation

Gene ID	Annotation
MD02G1060200	Integrase-type DNA-binding superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0356	ERF ethylene-activated signaling pathway EREBP-like factor nucleoside transmembrane transporter activity transcription factor activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1060200	mRNA	Chr02	4815948	4816775	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	ERF

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Solanum lycopersicum	Solyc06g066540.1.1	1	Integrase-type DNA-binding superfamily protein
Solanum lycopersicum	Solyc08g066660.1.1	1	Integrase-type DNA-binding superfamily protein
Populus trichocarpa	Potri.006G163400.1	1	Integrase-type DNA-binding superfamily protein
Populus trichocarpa	Potri.006G156600.1	0.945	Integrase-type DNA-binding superfamily protein
Oryza sativa	LOC_Os02g13710.1	1	"ethylene-responsive transcription factor TINY, putative, expressed"
Oryza sativa	LOC_Os06g36000.1	1	"AP2 domain containing protein, expressed"
Zea mays	GRMZM2G005301_P01	1	-
Zea mays	GRMZM2G047918_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function
GO:0003677	DNA binding	molecular_function

KEGG

KO	Description	Enzyme
K09286	EREBP-like factor	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.16	AP2	62	112	7.20E-12

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.62917
SRR5252888	dormant buds	no	dormant buds(0 month)	0.721221
SRR5252889	dormant buds	no	dormant buds(0 month)	4.17748
SRR5252886	dormant buds	no	dormant buds(1 months)	4.58084
SRR5252887	dormant buds	no	dormant buds(1 months)	2.1097
SRR5252884	dormant buds	no	dormant buds(2 months)	1.81418
SRR5252882	dormant buds	no	dormant buds(3 months)	2.07945
SRR5252883	dormant buds	no	dormant buds(3 months)	1.69944
SRR5252880	dormant buds	no	dormant buds(4 months)	1.29707
SRR5252881	dormant buds	no	dormant buds(4 months)	2.73541
SRR5252878	bud break	no	bud break	1.03353
SRR5252879	bud break	no	bud break	1.86238
SRR3744766	flower	no	mature	0.503202
SRR3744767	flower	no	mature	0.196888
SRR3744768	flower	no	mature	0.652831
SRR6308190	stigmas	no	open flowers	6.45421
SRR6308181	styles	no	open flowers	26.2642
SRR6308188	filaments	no	open flowers	13.5851
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.267781
SRR6308192	pollen	no	open flowers	1.53694
SRR6308191	petals	no	open flowers	11.7781
SRR6308194	sepals	no	open flowers	12.4975
SRR6308193	receptacles	no	open flowers	4.63808
SRR6308189	ovaries	no	open flowers	16.1697
SRR3384922	fruit	no	1 week after full bloom	133.145
SRR3384921	fruit	no	2 week after full bloom	86.6833
SRR3384920	fruit	no	3 week after full bloom	99.4096
SRR3384919	fruit	no	4 week after full bloom	38.5792
SRR3384923	fruit	no	5 week after full bloom	41.3764
SRR3384918	fruit	no	6 week after full bloom	44.0184
SRR3384917	fruit	no	8 week after full bloom	38.1635
SRR3384916	fruit	no	10 week after full bloom	27.1293
SRR3384915	fruit	no	12 week after full bloom	18.6301
SRR3384914	fruit	no	14 week after full bloom	14.8943
SRR3384913	fruit	no	16 week after full bloom	5.17663
SRR3384912	fruit	no	18 week after full bloom	5.12789
SRR3384911	fruit	no	19 week after full bloom	4.14168
SRR3384910	fruit	no	20 week after full bloom	0.304015
SRR768128	whole fruit	no	25 days post anthesis	12.9633
SRR768129	whole fruit	no	35 days post anthesis	15.9951
SRR768130	whole fruit	no	60 days post anthesis	39.6897
SRR768131	whole fruit	no	87 days post anthesis	7.46868
SRR7343308	immature fruit flesh	no	immature	5.7648
SRR7343309	immature fruit flesh	no	immature	10.0832
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	5.35986
SRR1613974	Central seeds	no	20DAPF	4.54733
SRR1613975	Central seeds	no	20DAPF	6.57635
SRR1613976	Lateral seeds	no	20DAPF	4.44694
SRR1613977	Lateral seeds	no	20DAPF	4.99629
SRR1613978	Lateral seeds	no	20DAPF	4.35737
SRR3744786	stem	no	mature	0.172628
SRR3744787	stem	no	mature	0
SRR3744772	stem	no	mature	0.0568651
SRX765691	seedling shoot apex	no	4-6 week old seedling	33.2062
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.41259
SRR1089478	leaf	Virus-free	plantlets	16.2171
SRR1089477	leaf	ASGV-infected	plantlets	15.0953
SRR767660	leaf	uninfected	fully developed	2.11195
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.18666
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.54839
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.05379
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.299339
SRR6308182	young leaf	no	immature leaves	1.72984
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0.0622553
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	6.22275
SRR6320561	leaf	no	mature	11.1431