Gene detail

Detail information of MD02G1136600 Annotation

Gene ID	Annotation
MD02G1136600	aldehyde dehydrogenase 3F1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0002	extracellular region

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1136600	mRNA	Chr02	11404250	11407048	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G36250.1	1	ALDH3F1\|aldehyde dehydrogenase 3F1
Pyrus communis	PCP002672.1	1	-
Pyrus x bretschneideri	Pbr040540.1	1	-
Rubus occidentalis	Ro01_G01136	1	-
Fragaria vesca	mrna14899.1	1	aldehyde dehydrogenase 3F1
Nicotiana benthamiana	Niben101Scf07034g04008.1	1	Aldehyde dehydrogenase family 3 member F1
Oryza sativa	LOC_Os02g43194.1	1	"aldehyde dehydrogenase, putative, expressed"
Oryza sativa	LOC_Os04g45720.1	1	"aldehyde dehydrogenase, putative, expressed"
Zea mays	GRMZM2G169458_P01	1	Aldehyde dehydrogenase

Gene Ontology

GO term	Description	Category
GO:0004030	aldehyde dehydrogenase [NAD(P)+] activity	molecular_function
GO:0006081	cellular aldehyde metabolic process	biological_process
GO:0055114	oxidation-reduction process	biological_process

KEGG

KO	Description	Enzyme
K00128	aldehyde dehydrogenase (NAD+)	EC:1.2.1.3

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.0759753
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0.121718
SRR3744766	flower	no	mature	0.877616
SRR3744767	flower	no	mature	0.970041
SRR3744768	flower	no	mature	1.03583
SRR6308190	stigmas	no	open flowers	0.0876992
SRR6308181	styles	no	open flowers	0.0754232
SRR6308188	filaments	no	open flowers	5.21045
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.350562
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	3.29146
SRR6308194	sepals	no	open flowers	0.750579
SRR6308193	receptacles	no	open flowers	0.299296
SRR6308189	ovaries	no	open flowers	0.0608081
SRR3384922	fruit	no	1 week after full bloom	0.465193
SRR3384921	fruit	no	2 week after full bloom	0.279746
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0.0455129
SRR3384923	fruit	no	5 week after full bloom	0.0432824
SRR3384918	fruit	no	6 week after full bloom	0.0481822
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.124436
SRR768129	whole fruit	no	35 days post anthesis	0.0683244
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.570815
SRR1613974	Central seeds	no	20DAPF	0.487555
SRR1613975	Central seeds	no	20DAPF	0.633152
SRR1613976	Lateral seeds	no	20DAPF	0.476791
SRR1613977	Lateral seeds	no	20DAPF	0.333709
SRR1613978	Lateral seeds	no	20DAPF	0.362995
SRR3744786	stem	no	mature	0
SRR3744787	stem	no	mature	0
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.194289
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.129738
SRR1089478	leaf	Virus-free	plantlets	0.198739
SRR1089477	leaf	ASGV-infected	plantlets	0.231239
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.0729068
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.304991
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.128518
SRR6308182	young leaf	no	immature leaves	0.439887
SRR3744769	leaf	no	mature	0.024286
SRR3744770	leaf	no	mature	0
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0