Gene detail

Detail information of MD02G1205600 Annotation

Gene ID	Annotation
MD02G1205600	Leucine-rich repeat protein kinase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0718	regulation of meristem growth transmembrane receptor protein tyrosine kinase signaling pathway (1->3)-beta-D-glucan binding carbohydrate kinase activity pyridoxamine-phosphate oxidase activity Leucine Rich Repeat Kinase IV

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1205600	mRNA	Chr02	20579154	20583289	-

Sequences

CDS:

MD02G1205600

TCATTCTCACACCTAAGCACTGTAACTGCAGGGAGTGTGTGACAGTGCGACTCTGTTTTCACCTGCAGAGTCCACTCATCTCCTTCTCAAACCAAACCTCACTCTCCGTCTCCATTCAAAAAAACAAAGGAAAGAAAATTAAAAAACCAACAATCATCTCACTCTCGCCTCGAAGTTCTAAATCGCACATTTCCCACACACACGTTCATAACAAAATTAAGAAAGTCCCACCTTTTCCCACCCATTTTCTCTCATTTTCCCACTAACCAAACAGCATATGTTTATCTTGTCAGTCATTATGCAGAGCCTAAACCACCCATTTCACTTCAAATCCTCAAAAACCCAGCAAAACCCAGATGCCAAAAACTGAAAAAGTTCCAAAATTCCCCACCCTCCAAACAGAAAGAGAGAAATCCCGACATTTTCCAACCCATTTTCTCTCATTTTCCTCTAACCAAACACACCCTGTTATCTTCCCAGACAATATGCAAAGCCTAAACCACCCATTCCACTACAAATACTCAAAAACACAGCAAACCCCAGAAACCAAAAACTAAAAAAATCCAAAATTTCCCACGCACCCACCAAGATTCCCACACTTTCCCTCTCATTTGCTCACACTTCCCCACTAACCAAACATGCATTGTTTCCCTCTATCCGTTCTCCTCGTCCTCCTTCTCCTCCCCCCCTCTCTCTCCTCGCTCACCGAGCTCCCTGCTCTCATGGCAATGAAGGCTTCGCTGGACCCACAAAACCAGTTCTTGACGTCATGGACGCCGCACGCCGACCCCTGCGGCGGCGCTTTCGAAGGGGTGGCTTGCAACGAGCAGGGCCGTGTGACCAACATCTCTCTGCAGGGGAAGGGCCTGTGGGGCCAGATTCCCCCGACCGTTGGCGGCCTCAAGAGCCTCACTGGCCTCTATCTTCACTTCAATGCTTTGAGTGGGAAAATCCCGAAGCAGCTTGCTGGTTTGAACCAGCTCGCTGATTTGTACCTCAACGTGAACAATCTTTCTGGTGCAATTCCTCGTGAGATTGGTAAAATGCCCAATTTGCAAGTTTTGCAGTTGTGTTACAACAAGTTGACTGGGGGGATACCTACACAATTAGGGCAGCTTAAAAGGCTTAGTGTTCTTGCTGTGCAATCCAATCAGTTAACTGGGGCAATTCCTGCAAGTTTGGGCGAGTTGGGGACGCTAACAAGGTTAGACTTGAGCTTTAATAGCTTATTTGGTCCTATTCCAGCAAGATTAGCCGATGCTCCTATGCTAGAAGTCCTTGACGTTCGAACCAATATTCTCTCAGGAAATGTACCTCCAGCTCTAAAGAGACTTAACGAAGGATTCCTATACGAAAACAACCCGAGCTTATGTGGGGTTGGGTTTTCTGGCTTAGAATTGTGCACAGCTACTAATACTCGGAACCCAAACATACCACAACCATTTGAACCTAGTAACCTTTCGGCAAAAGATCCAGACTCATCTACTGCAAAAGAAATCCCCAAGTCAGCAAATATCCATTCCAATTGTAGCCAAACCCGCTGTTCAGAGGCATCAAAATCCCCACAAATTGGTATAATCTTTGGGGTGATTGGAGTTATTGTTGCATTAACTGTATCTGGGCTCTTCTTGTTCTTCTGGTGTCGTCGACAAAAGCAGAAGATTGGGAGTACTTTTGACTCTTCTGATAGCAGGCTTAGTACTGACCAGGCAAAGGAAGTTTACAAGAAGAGCGTGTCTCCTCTTATCAATCTGGAGTATTCTAACGGGTGGGATCCGTTGGCTAAAGGTGGCAGTGGGTACTCTCAAGAAGTTCTTGAGAGTTTTATGATTAATTTAGAAGAAGTGGAGCGTGCAACTCAAAGCTTTTCTGAAGTCAATCTTTTGCGGAAGAGCAATTTTTCTGCCATCTACAAGGGTATCCTAAGAGACGGTTCGGTTGTTGCTATAAACTGCATTAGCAAGACTAGTTGTAAGCCCGACGAAGCTGAGTTTTTGAAGGGAATGAAGATATTGACATCATTAAAACATGAGAATCTTGTTAGGTTGAGAGGCTTTTGCTGCTCAAAAGGCAGGGGAGAGTGGTTTCTTATCTATGACTTTATCCCAAATGATAGTCTGTTACAGTATCTCGACATTAAGGATGGGAGTGGGGAGGTTCTTGAATGGTCAACCAGAGTATCTATAATCAATGGGATCGCTAAAGGTATTGGATATTTGCATGGAAACGTGGGCAATAAACCTGCTATTGTTCACCAGACCATGTCAGCTGAGAAGGTGCTTATTGATTCCCACTACAACCCCTTACTCTCAGATTCGGGCTTGCACAAACTCCTCGCAGATGATATCGTCTTCTCAATGCTCAAAGCCAGTGCTGCCATGGGGTACCTGGCTCCCGAGTACACAACCACTGGACGCTCCACTGCGAAGAGTGACATTTATGCGTTTGGTATGATTGTATTTCAAATCCTTTCTGGAAAACATAAAATCACCCAGGTGGCTCGCCAAGGTGCTGAGGCTGGCAGATTTGAAGATTTTATGGATGCAAACCTCGAGGGAAATTTTTCAGAATCAGAGGCAAGTAAACTTGGCAGACTTGCTCTTCTTTGCATGCACGAGTCTCCCATTTACAGGCCATCAATGGAAAATGTGGTGAAAGAGCTAAGCGAGTTTATTTGCGTGTGATTAATACGGAGTTGCCACAATTTTCAAATGACTAGAGAGGATTAGAGGAGTCAATTAAGTTATTAACTGCTGACTGGAACTGGAGTTGTGTTCTTCTTACCATCGCGTCGGATTCTTGATGACTGAAGTTGTCGTGAACGGCTTGTACGTATTATATGTGCTGGTTTTGTTGTAATGTGTGACAGATGGTCATAAGTGATTTTGATGGGAGAATGCATCATTTGATCATCTGCCTTTGTTGATCTTGAAGCCTTGCAAGGAGGCATGTTGCTTGAATTAGCAAATTAAGGTTATTTGTAATTTTCATGTGTAGCATTTGGAAGATGTTGTGTTGCAATGTCATTAGCTTGAACTTGTCAAAACTAATTTCTGTAAACCCCTTAAATAAACATGTTGCTTAGATGTTAGTTTTTTTTATTTCTTTGATAAACTGCTTAGATGTTAGTTATGCCAATTGGTCGAGGCAGTGT

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:1.13.2

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G51560.1	1	Leucine-rich repeat protein kinase family protein
Prunus persica	Prupe.2G144000.1.p	1	Leucine-rich repeat protein kinase family protein
Pyrus communis	PCP006109.1	1	-
Rosa multiflora	Rmu_sc0003674.1_g000018.1	1	-
Rubus occidentalis	Ro07_G05955	1	-
Fragaria vesca	mrna19419.1	1	Leucine-rich repeat protein kinase family protein
Populus trichocarpa	Potri.002G147000.1	1	Leucine-rich repeat protein kinase family protein
Populus trichocarpa	Potri.014G068700.1	0.629	Leucine-rich repeat protein kinase family protein

Gene Ontology

GO term	Description	Category
GO:0004713	protein tyrosine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006468	protein phosphorylation	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.13	Pkinase_Tyr	416	675	5.00E-32

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.21865
SRR5252888	dormant buds	no	dormant buds(0 month)	0.978739
SRR5252889	dormant buds	no	dormant buds(0 month)	1.94784
SRR5252886	dormant buds	no	dormant buds(1 months)	1.849
SRR5252887	dormant buds	no	dormant buds(1 months)	0.609866
SRR5252884	dormant buds	no	dormant buds(2 months)	0.216435
SRR5252882	dormant buds	no	dormant buds(3 months)	1.62804
SRR5252883	dormant buds	no	dormant buds(3 months)	0.473074
SRR5252880	dormant buds	no	dormant buds(4 months)	7.04079
SRR5252881	dormant buds	no	dormant buds(4 months)	7.0936
SRR5252878	bud break	no	bud break	13.5941
SRR5252879	bud break	no	bud break	18.7533
SRR3744766	flower	no	mature	1.31432
SRR3744767	flower	no	mature	1.43202
SRR3744768	flower	no	mature	1.43154
SRR6308190	stigmas	no	open flowers	0.739236
SRR6308181	styles	no	open flowers	1.53561
SRR6308188	filaments	no	open flowers	0.897624
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.576425
SRR6308194	sepals	no	open flowers	0.418914
SRR6308193	receptacles	no	open flowers	3.93534
SRR6308189	ovaries	no	open flowers	9.50957
SRR3384922	fruit	no	1 week after full bloom	4.19096
SRR3384921	fruit	no	2 week after full bloom	10.3926
SRR3384920	fruit	no	3 week after full bloom	8.71512
SRR3384919	fruit	no	4 week after full bloom	5.41238
SRR3384923	fruit	no	5 week after full bloom	2.76499
SRR3384918	fruit	no	6 week after full bloom	2.81756
SRR3384917	fruit	no	8 week after full bloom	1.19642
SRR3384916	fruit	no	10 week after full bloom	1.48764
SRR3384915	fruit	no	12 week after full bloom	0.866943
SRR3384914	fruit	no	14 week after full bloom	0.636978
SRR3384913	fruit	no	16 week after full bloom	0.330111
SRR3384912	fruit	no	18 week after full bloom	0.28163
SRR3384911	fruit	no	19 week after full bloom	0.135058
SRR3384910	fruit	no	20 week after full bloom	0.0422986
SRR768128	whole fruit	no	25 days post anthesis	14.4624
SRR768129	whole fruit	no	35 days post anthesis	9.15226
SRR768130	whole fruit	no	60 days post anthesis	2.48222
SRR768131	whole fruit	no	87 days post anthesis	0.594487
SRR7343308	immature fruit flesh	no	immature	2.54872
SRR7343309	immature fruit flesh	no	immature	1.64463
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.0141259
SRR7403506	fruit	uninfected	mature	0.0149219
SRR7403507	fruit	uninfected	mature	0.0354345
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	1.03485
SRR1613974	Central seeds	no	20DAPF	1.34351
SRR1613975	Central seeds	no	20DAPF	1.00073
SRR1613976	Lateral seeds	no	20DAPF	1.23181
SRR1613977	Lateral seeds	no	20DAPF	0.99189
SRR1613978	Lateral seeds	no	20DAPF	1.01454
SRR3744786	stem	no	mature	0.554706
SRR3744787	stem	no	mature	0.719862
SRR3744772	stem	no	mature	0.581233
SRX765691	seedling shoot apex	no	4-6 week old seedling	13.0319
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	24.1545
SRR1089478	leaf	Virus-free	plantlets	3.87206
SRR1089477	leaf	ASGV-infected	plantlets	3.954
SRR767660	leaf	uninfected	fully developed	1.94004
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	19.0819
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.14471
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.129804
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.377835
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.380486
SRR6308182	young leaf	no	immature leaves	14.4098
SRR3744769	leaf	no	mature	0.449645
SRR3744770	leaf	no	mature	0.471376
SRR3744771	leaf	no	mature	0.317139
SRR5405145	leaf	no	mature	0.870579
SRR6320561	leaf	no	mature	0.644356