Gene detail

Detail information of MD03G1045600 Annotation

Gene ID	Annotation
MD03G1045600	peroxin 5

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0552	peroxin-5 E3 ubiquitin-protein ligase NEDD4 [EC:2.3.2.26] peroxisome matrix targeting signal-1 binding ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24] acid-amino acid ligase activity HECT RWP-RK

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD03G1045600	mRNA	Chr03	3656896	3665779	+

Sequences

CDS:

MD03G1045600

CTGATAACTTAGACAGACGTCACAGACCAAGAAGAGGAACTGAAACAGCCATCAAAGCTCTCTTTCTGCTGTAATCCCCTCAATCCAAATCCCAACAAACACACTCATCATTTCTTCATATTTTTCCGGTTGGTCTTTCTTGAATTATTATTTAAATAATTCACAGAGAAGAAAAATACACAGAGAGATATTTACACAGTGGGTGGCGGTTGTATTGTACTTCTGGTGTGGATTGAAGAGGTAGAAGAACATCGGCCGCCATGGCGATGCGCGAGCTCGTGACCGGCGGAGCAGCTTGTGCGGTTCCGGGCCAATCTTCTTCCTCCAATCCTTTCGGCGCCCTCGCCAACGCCCTCATCGGCTCCTCCTCCAAGCAGGAGGGGTTGAAGGAGATACCTTCGTCGACGCCCACTGCTTCCGAGCCGCAGTTTTATCCCGACGGCCATGGACACCTGCAACAGCTCCCCGGCTCCGAGCTCGACCAGCCGTTTATGCAGCCCCGCACTCAGAGCTCGGAGTTTCTTCGAAACTTCAACTCGGTTGATGGCAACAGACTGCTTGACAATGCGTGGGACGAGATACAGAGTTCTCGGCCCGAGCCTATGCATATGCCTCAACACGACCGCATTTATGATATGAGACCTCAGCTTCAACCGACTTTGGATGGGCCACCACAAAGGGTGTTGTCAAGCTTTTTGCACTCATTTGTTGAAAGTAGTCGTGGTGGAATGCCTTTTCGTCCCACTCCACTTCCAGTGTTAGGATTGTCTGCTGGTGACAAACAATGTATACGTGATCGCACCAGCATCATGGCCCGGCACTTCTTTGCTGATAAAAGTGAAGATTTTATTAATGGGCAGGTCAATGCACTTTTATCTTCTTTAGATATTGACAGTGATGTCAACAGTAAAGGACCTCTGCCTGCAAGGTTTCGGGAACTGGACGATTATTGGAATGAATCCCAAGCTATAACAAAACCTGGTGCTCACGCTGCGCAAGGATGGGTCACTGAATTTAGCCAACATAGGTTAGATCATGGTGATCCCAATACGTGGGCTCACTCATTTGAGCGACAACATGGTGCCAATGGTTGGGCTTCTGAATTTGAGCAGGAACAGTCCCAGTTGATGTCTGCAGATCATATGAGAGGTGTAAATATGGCAAACTTAGCTGCAATGGAGCAAACTCGTATACTTGCAAATACGCTAGCTCAGAATGAAGAACCAAAGTTTCAGAAGTCAAGGTTTCTCCAGTTTGTGTCAAAAATGAGTCGTGGTGAACTCATTATCGATGATAATCAAGTCAAGCCGGCAACATCATCTGGGGACTGGGCATCGGAATATCAACGGCAGTATAATGCGGGTCCTAGTTGGGCTGACGAATATGCACGTGGTGAGCTATCTCATGGACCCAATCAATGGGCAAATGAGTTTAATTCTGAACAAGAGCAGCATGGGTCAGTTGATGATCAGTGGGTCAATCAGTTTTCTAAGTTGCATGTCGATGACTGGGCTGAGGATTTTGGAAATCAGGTTGGTGAAGGACTCTTGGGGGACAGTTCTGCTGATAGCTGGGCTAATGCATACAATGAGTACATGAATGAGCAAGTAGCTACGAAACAGCGTAATGATGCTGCAAGGGGAGTTTATGTATTTTCCGATATGAATCCTTACGTTGGTCACCCAAACCCACTAAAAGTAGGCCAGGAAATGTTCCACAAGGGTCTTTTGAGTGAAGCAGTGCTGGCATTAGAAGCCGAAGTTCTCAAAAACCCCGACAATGCTGAAGGTTGGAGGCTACTTGGAATAGCGCATGCAGAAAATGATGATGATCAACAGGCTATAGCAGGTATGATGCGTGCACAGGAGGCTGATCCAACAAATCTCGAAGTGCTTCTTGCTCTTGGAGTGAGTCATACAAATGAAATGGAGCAGGCGTCTGCTTTGAAATATTTACATGGATGGTTACGCCATCACCAAAAGTATGGGGTACTTACCAACCCAGAGCTGTCTGATTCCTTGTATTATGCTGATGTTGCTAGATTATTCAATGAAGCTGCTCAGATGTCACCTGATGATGCTGATGTGCACATAGTACTTGGTGTCCTTTACAATTTGTCAAGAGAATATGACAAAGCTATCAATTCCTTCCGGACAGCTTTGAAACTAAAGCCACAAGATTACTCTCTGTGGAACAAGCTTGGAGCAACACAAGCCAACAGTGTTCAGAGTGCTGATGCGATATTCGCGTATCAACAGGCATTAGATTTGAAGCCAAATTATGTTCGTGCATGGGCAAATATGGGTATCAGTTATGCCAACCAGGGCATGTATGAGGATTCCATACGTTACTATGTCCGAGCACTGACCATGAATCCAAAGGCAGACAACGGTTGGCAATATTTGAGAATTTCGTTGAGCTGTGCTTCTAGGAACGACATGTTGGAAGCATGCGATTCTCGGAATCTAGATGTTCTCCAGAAAGAGTTTCCGTTATAGAACATGTATCTATTTCGGGTTGCTGGAATGAAAAACCGAAACATGCATCCTCTGGTGCTCCCGCCGGAACTGTGATTTTAGAGAACATTCACCTTTACGGTTCATCCTCCGGTGCTTCTTAAGCAAAGTCTGCCGGTTTTGGTAAACATTATCCCGACAGAGGCGTAACTCGAAAGAAGAAGCGGGCCAATAAAAATTCATCGAAATGAAATAAGTCTCGGCACTTCAAAAATAAATCGTCGATGTGTAACGCTTCTTATGTATAACAGAAATCAGAATCATAGCTTGCATTGAAAAAGGATGTAAATTGTAATGGAATTAGGGTTTGTTCATATCTGCTGTGGTTATTTTGGTCACACTGTTGGTGCTCATGATTTTTTGTCAAATTTTTAAGAATTTTCAGAGTATAAAGTTGGAAGTATGCTAATTTCGCCGGTTTAAGAGATTTTGTTCTTGAATGCGAAGGTCCCAT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G56290.1	1	ATPEX5;EMB2790;PEX5\|ARABIDOPSIS PEROXIN 5;EMBRYO DEFECTIVE 2790;peroxin 5
Pyrus communis	PCP023509.1	1	-
Pyrus x bretschneideri	Pbr023111.1	1	-
Rosa multiflora	Rmu_sc0000573.1_g000053.1	1	-
Rosa multiflora	Rmu_sc0004706.1_g000003.1	0.959	-
Rubus occidentalis	Ro03_G12102	1	-
Fragaria vesca	mrna01186.1	1	peroxin 5
Vitis vinifera	GSVIVT01014864001	1	peroxin 5
Populus trichocarpa	Potri.001G473100.1	1	peroxin 5
Nicotiana benthamiana	Niben101Scf03733g00011.1	1	Peroxisomal targeting signal 1 receptor
Oryza sativa	LOC_Os08g39080.1	1	"tetratricopeptide repeat domain containing protein, expressed"
Zea mays	GRMZM2G115855_P01	1	-
Zea mays	GRMZM2G080775_P01	0.828	-

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
K13342	peroxin-5	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	7.5883
SRR5252888	dormant buds	no	dormant buds(0 month)	13.9747
SRR5252889	dormant buds	no	dormant buds(0 month)	15.8168
SRR5252886	dormant buds	no	dormant buds(1 months)	12.1068
SRR5252887	dormant buds	no	dormant buds(1 months)	13.9515
SRR5252884	dormant buds	no	dormant buds(2 months)	22.9731
SRR5252882	dormant buds	no	dormant buds(3 months)	17.1938
SRR5252883	dormant buds	no	dormant buds(3 months)	21.8897
SRR5252880	dormant buds	no	dormant buds(4 months)	17.1595
SRR5252881	dormant buds	no	dormant buds(4 months)	18.4051
SRR5252878	bud break	no	bud break	9.61031
SRR5252879	bud break	no	bud break	5.23267
SRR3744766	flower	no	mature	16.5963
SRR3744767	flower	no	mature	16.6081
SRR3744768	flower	no	mature	17.0793
SRR6308190	stigmas	no	open flowers	12.0076
SRR6308181	styles	no	open flowers	11.1798
SRR6308188	filaments	no	open flowers	6.9388
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	11.2575
SRR6308192	pollen	no	open flowers	17.8877
SRR6308191	petals	no	open flowers	7.78404
SRR6308194	sepals	no	open flowers	9.67658
SRR6308193	receptacles	no	open flowers	10.1721
SRR6308189	ovaries	no	open flowers	10.7815
SRR3384922	fruit	no	1 week after full bloom	4.06438
SRR3384921	fruit	no	2 week after full bloom	3.57821
SRR3384920	fruit	no	3 week after full bloom	3.4864
SRR3384919	fruit	no	4 week after full bloom	3.86511
SRR3384923	fruit	no	5 week after full bloom	4.94629
SRR3384918	fruit	no	6 week after full bloom	4.52118
SRR3384917	fruit	no	8 week after full bloom	4.23006
SRR3384916	fruit	no	10 week after full bloom	3.90822
SRR3384915	fruit	no	12 week after full bloom	5.01652
SRR3384914	fruit	no	14 week after full bloom	4.75659
SRR3384913	fruit	no	16 week after full bloom	5.53844
SRR3384912	fruit	no	18 week after full bloom	5.34776
SRR3384911	fruit	no	19 week after full bloom	7.43435
SRR3384910	fruit	no	20 week after full bloom	8.21242
SRR768128	whole fruit	no	25 days post anthesis	6.20961
SRR768129	whole fruit	no	35 days post anthesis	4.62979
SRR768130	whole fruit	no	60 days post anthesis	6.37831
SRR768131	whole fruit	no	87 days post anthesis	9.23968
SRR7343308	immature fruit flesh	no	immature	13.4354
SRR7343309	immature fruit flesh	no	immature	11.1657
SRR6320494	ripe fruit flesh	no	mature	12.1503
SRR5405143	ripe fruit peel	no	mature	13.2653
SRR6320572	ripe fruit peel	no	mature	9.25789
SRR7403504	fruit	uninfected	mature	11.1651
SRR7403506	fruit	uninfected	mature	11.6351
SRR7403507	fruit	uninfected	mature	10.8666
SRR7403500	fruit	infected with penicillium expansum	mature	13.8637
SRR7403501	fruit	infected with penicillium expansum	mature	13.3496
SRR7403508	fruit	infected with penicillium expansum	mature	13.4564
SRR7403502	fruit	infected with penicillium expansum	mature	11.9177
SRR7403503	fruit	infected with penicillium expansum	mature	14.822
SRR7403505	fruit	infected with penicillium expansum	mature	14.5197
SRR1613973	Central seeds	no	20DAPF	8.55357
SRR1613974	Central seeds	no	20DAPF	8.99317
SRR1613975	Central seeds	no	20DAPF	9.09856
SRR1613976	Lateral seeds	no	20DAPF	9.44709
SRR1613977	Lateral seeds	no	20DAPF	9.27139
SRR1613978	Lateral seeds	no	20DAPF	9.75952
SRR3744786	stem	no	mature	19.9971
SRR3744787	stem	no	mature	20.2486
SRR3744772	stem	no	mature	21.1936
SRX765691	seedling shoot apex	no	4-6 week old seedling	8.9874
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.56717
SRR1089478	leaf	Virus-free	plantlets	7.42288
SRR1089477	leaf	ASGV-infected	plantlets	8.92061
SRR767660	leaf	uninfected	fully developed	5.09295
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.68984
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.27768
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	4.11126
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	6.66493
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.76819
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.52612
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	5.13995
SRR6308182	young leaf	no	immature leaves	6.25124
SRR3744769	leaf	no	mature	19.5005
SRR3744770	leaf	no	mature	20.2493
SRR3744771	leaf	no	mature	20.8641
SRR5405145	leaf	no	mature	9.19336
SRR6320561	leaf	no	mature	6.9395