Gene detail

Detail information of MD03G1191000 Annotation

Gene ID	Annotation
MD03G1191000	ENHANCED DOWNY MILDEW 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0807	RNA polymerase II-associated factor 1 ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23] splicing factor 3B subunit 2 PAFA HUPB triose-phosphate isomerase activity cytosol triosephosphate isomerase (TIM) [EC:5.3.1.1]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD03G1191000	mRNA	Chr03	26261850	26274142	+

Sequences

CDS:

MD03G1191000

GCAAAGTGGGGAAGCTGATTGAGAATTTGAGAGCGTCTGAGGAGGAAGTTAGGGTTTTTTTTTTTTCTTTCTGTCAATCCGATCAGGTGTGAATTGTAGTGTGAGTTGAATAAGGGCATGGAATCGTCAGACGATGAGGCGGAGGCGGTGCCGCAATCCGTTTCGAATTACCATTTTGTAGATGACAAGGACGAACCCATCTCATTTCATGTTTTGCCGATTCAGTGGAGTGAGGGTGAGACGCAAGATGGGAAGAAAGTGGACATATTTGTGCGTGGCACTGCCGATAATGGGCTTCAGAAACTGTATAAGCATGTTATCGCATGGCGGTTTGATCTTTCCAATGTCGATCCTGAGATATCGGTTCTCTCTAAGGAAAATAACTGGCTCAAGCTTCAGAAGCCGAGAAAGAGTTTCGAGGAAGTAATAAGTTCAATCTTGATAACAGTGCAGTGCCTTCACTATGTGAGGAGAAATCCTGAGACATCCGGCAAATCTCTGTGGGATCACTTATCTAAAGTTTTCAGCTCCTATGAGGTCAGGCCTTCTCAGAATGACCTGGTGAATTATATTCCTCTAATTAGTGAAGCTGTTAAACGGGATGATGCATTAGCAAAGTGCAAGTTTTTAGTCAACTTTCTTGAAGAGAAGCCCACCAAGAGGAAACTGCATGATGAGGACATTCAAGCTACAACAAAACCTGGATTTATAGTTGATGATACGGAAGAAGATATGATTGATGCTGAAGACGAGTCCAGTGACGATGATAACCTGTTTGATTCTGTTTGTGCATTTTGTGATAATGGTGGCGATCTTTTGTGTTGTGAAGGGAGATGCCTAAGGTCATTTCACGCAACTGTAAAGGATGGTGAGGATTCTATGTGTGAAACCCTTGGCTTTACCCAGGATGAAGTAGACGCGATTCAGAACTTCTTCTGTAAGAACTGTCAGTATAAACAACATCAGTGCTATGCTTGTGGGAAGCTAGGCTCCTCTGATAAATCTTCAGGGGCTGAGGTCTTCCCCTGTGTTTCTGCAACCTGTGGTCAATTTTACCATCCACGTTGCATTGCAAAACTCATTTATAAAGACAATGGAGTCTCTGCTGAAGAACTTGAGAAAAAAATTGCTATGGGTGAATCTTTTACATGTCCGATTCATAAATGCTGCATTTGTAAACAAGGAGAGAACAAGAAGGATACTCAGTTGCGGTTTGCTGTGTGTCGGCGTTGTCCCAAATCCTACCACAGGAAATGCTTGCCAGAGGATATTGTATTTGAGAAAACAGAGAAAACAGAGAAAACAGAGGAAGACGAGGAGGAGGAAGACGAAGAGGATGAAGGTACAACACCAAGGGCTTGGGAAGGACTATTACCAAACCGTGTACTAATATATTGCACAAAACATGAGATAATTAAAGACATTGGAACGCCAATAAGGGACCACGTAACATTCCCTGATGTTGGAGAAAAGAGGACCAGTTTTGTTCGAAAGAAGACTGATTTTGTAGAGAAAAAGAAAAAACGGACATTAGAATCCCTTCAAGATAGAGAAAAATCTGTGAAAAATAAGAGAAGCCTTTCCGCTGAAGAATTCTGTAGGGGTCAAACTGCTCCTACGATATCTAAAGAGAAGCTGAAGTCATCTTCTGCTGCAAAAGTGGGTGGTAACAGAATTAGTAAAAAACTACCTTCTGGGTTAGATACATCAAGAAAGGTGAAAGCGAATAGTGCTTTGAAAAAGGAAGCTAAGATTTCTGTGGCTGAGGAACAAATGACCTCATTGGGTGATCAGCTATATGCCTATATGAACAGGTCTAATCAAGTGAAGTTGGGTAAGCAGGGCAAACCTGATGGGGAGTGTGGTTTGGCAATAGGCAATCCTGCCTCAAAAACGTTGATCAGTGCACCACCATCTTTAGATGCAGCTACAGAGAGGAGATTACTGGCTTTAATGAAAGATGCCACATCTTCAATAACTCTGGAAGATGTTATAAGAAAGCGGCAGCGCACAGTTCCATCGACTCATCAATCCTCGTCCAAAAATGCTGTGGATAGGAACATTACACTGGGAAAGGTAGAAGGCTCAGTTGAGGCTGTTCGAACAGCGTTACGGAAACTAGAGGAAGGATGCAGTACTGAAGATTCTGAGGCTGTTTGTGCTCCTGAGGTGGTTCACCAGATTTACAAGTGGAAGAACAAGCTGAGAGTATATCTTGCACCTTTTTTGCACGGAATGCGCTACACGTCCTTTGGTCGTCATTTTACAAAGGTGGACAAATTAGAAGAGATTGCTGATAGGCTGCATTGGTACGTAAAAGATGGAGATACGATAGTGGACTTCTGTTGTGGTGCCAATGATTTCAGCATCGTAATGAAGAAAAAGCTTGAAGAGACGGGGAAGAACTGCTTTTATAAAAACTATGACTTAATTCAACCGAAGAACGATTTCTGTTTTGAGAAGAGAGATTGGATGAAAGTAAAACCAAAGGAGTTACCGAAAGGGTCACAATTGATCATGGGGTTGAACCCTCCCTTCGGAGTTAAAGCAGCTCTGGCAAACAGGTTTATCGACAAGGCTCTTGAGTTCGATCCAAAGCTCCTTATTCTTATTGTTCCACCAGAAACTCAAAGGTTAAATGAAAAGAAATCGCCATATGATCTAATCTGGGAGGATAACCAGTTTCTGTCAGGAAAGTCTTTTTATCTCCCGGGATCTGTTGATGTGAATGACAAACAAATGGATCAATGGAATGTAACGCCGCCACCACTCTATCTCTGGAGTCGTCCTGATTGGTCTGCTGACATCAAGGCTATAGCTCAAGAGCATGGTCACATGTCTGCATCACAAAGGTATATGAAAGATCATTCTGACTCTCTAAATCATGGTCGTTCAATAGGTAATGATGATCAATATGGTGAAGCACCTATGCTGATTGATTATGATGGCATAAAAACCGATAGTCCCAAAGATGTTGAAGGTGGGGCTGTTGTGGCTGAGGAACACAGAGAAAGCTCCTGTGAGAACAGTGGTGACATAGGTGGCAACGAGAGTCCTGGGGATGGTAACAACATTGATGAGACATGCAATGAAATTCTGCCACGCATTGAGCCTGCTGAAAAGGGAGATCAGCACTCTGAGCCTAGCAATTCTGGTTCAAGCGCGAAGTACGGAACTACTTATGGTGGGACAACGGTTAATGTAGCTGATGACAGAGGTAGAAGAAGCTTATCGAGGAGCAGTGATGAGCCTTACTCGAGTCTGACTCATAGATGGTCCGCTGGTCCCAGTTCTGGTTATAGGGCTACAAACTTGGAGGAACCGTTTGTGGGGCACATGAGAGACAGATTGGATACCCTTGGATATAGACCATGCTTGAATGAGGTAGAAGATCCATTTAGGAGGGAGTCTGACGTACGTTCTCAGATTCGGATTTATGGTCAGCAAGATTTTGGTCCTTTAAGAAGTAATTATCTAGTGGGTCAGGATTCTGTAAGTGGACAGATTGGATCGTATTCATCTCCTTACAGCCATAGTCATCTTGGTCTGACAGCTGAGTCATCTTACAGAATGAACACGTCCGCCATGCAGCGGTATGCACCTCGGTTGGATGAACTGAACCACACGAGGATGGGTGGCGTAGGATCTGAACCTGCTTTAGGATACGAACCGCACATGTTCAGCAGCAACGGCACTTTTGATCCCAGGGCACCCCGGCCCGGTCAACACGGTGGCTCCATGGGTTTTGCTCCCGGTCCTCACCAAAGCTATTCGAACCAAAATTCAGCAGGTTGGTTGAATGAGTAAAGCATGTACCATTTGATCGGTGTGTTTTCCCTTTTGTGCCTGAGAGTGGTAAATGTTGGTGTATATTATATAAAAGTGTTTTCGCAACTTTGTACTCGATGCCACTTCATTAGTTTTTTGTTCCTTGAACGGAAACGTATGATATTTTACAAGTTTGTTCTTCCATCCTATTTTTCTTTCTTGTTTTGGCTGAATGAGTGAGTTTGCCTTGT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G55390.2	1	EDM2\|ENHANCED DOWNY MILDEW 2
Arabidopsis thaliana	AT5G55390.1	1	EDM2\|ENHANCED DOWNY MILDEW 2
Prunus persica	Prupe.4G227500.5.p	1	ENHANCED DOWNY MILDEW 2
Prunus persica	Prupe.4G227500.3.p	1	ENHANCED DOWNY MILDEW 2
Prunus persica	Prupe.4G227500.6.p	1	ENHANCED DOWNY MILDEW 2
Prunus persica	Prupe.4G227500.1.p	1	ENHANCED DOWNY MILDEW 2
Prunus persica	Prupe.4G227500.4.p	0.843	ENHANCED DOWNY MILDEW 2
Pyrus communis	PCP009163.1	1	-
Pyrus x bretschneideri	Pbr039795.1	1	-
Rosa multiflora	Rmu_sc0000161.1_g000001.1	1	-
Rubus occidentalis	Ro03_G21688	1	-
Fragaria vesca	mrna03504.1	1	ENHANCED DOWNY MILDEW 2
Vitis vinifera	GSVIVT01037749001	1	ENHANCED DOWNY MILDEW 2
Solanum lycopersicum	Solyc10g006090.2.1	1	ENHANCED DOWNY MILDEW 2
Populus trichocarpa	Potri.001G359900.1	1	ENHANCED DOWNY MILDEW 2
Nicotiana benthamiana	Niben101Scf01752g09018.1	1	ENHANCED DOWNY MILDEW 2 LENGTH=1297
Nicotiana benthamiana	Niben101Scf04367g00012.1	0.854	ENHANCED DOWNY MILDEW 2 LENGTH=1297
Oryza sativa	LOC_Os01g32720.1	1	expressed protein
Oryza sativa	LOC_Os08g24946.1	1	"EDM2, putative, expressed"
Zea mays	GRMZM2G013936_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12047.4	DNMT1-RFD	14	137	1.50E-08

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	8.10769
SRR5252888	dormant buds	no	dormant buds(0 month)	34.6119
SRR5252889	dormant buds	no	dormant buds(0 month)	36.0527
SRR5252886	dormant buds	no	dormant buds(1 months)	33.8931
SRR5252887	dormant buds	no	dormant buds(1 months)	30.5504
SRR5252884	dormant buds	no	dormant buds(2 months)	47.4512
SRR5252882	dormant buds	no	dormant buds(3 months)	41.6369
SRR5252883	dormant buds	no	dormant buds(3 months)	28.6935
SRR5252880	dormant buds	no	dormant buds(4 months)	39.336
SRR5252881	dormant buds	no	dormant buds(4 months)	37.4373
SRR5252878	bud break	no	bud break	23.1745
SRR5252879	bud break	no	bud break	20.8218
SRR3744766	flower	no	mature	20.2212
SRR3744767	flower	no	mature	21.177
SRR3744768	flower	no	mature	20.1418
SRR6308190	stigmas	no	open flowers	17.1352
SRR6308181	styles	no	open flowers	16.6491
SRR6308188	filaments	no	open flowers	11.1159
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	19.6355
SRR6308192	pollen	no	open flowers	29.5258
SRR6308191	petals	no	open flowers	13.6872
SRR6308194	sepals	no	open flowers	16.4337
SRR6308193	receptacles	no	open flowers	13.3957
SRR6308189	ovaries	no	open flowers	13.8866
SRR3384922	fruit	no	1 week after full bloom	7.47704
SRR3384921	fruit	no	2 week after full bloom	7.11627
SRR3384920	fruit	no	3 week after full bloom	7.25734
SRR3384919	fruit	no	4 week after full bloom	6.91207
SRR3384923	fruit	no	5 week after full bloom	7.67435
SRR3384918	fruit	no	6 week after full bloom	8.25044
SRR3384917	fruit	no	8 week after full bloom	9.66655
SRR3384916	fruit	no	10 week after full bloom	10.1044
SRR3384915	fruit	no	12 week after full bloom	9.39793
SRR3384914	fruit	no	14 week after full bloom	9.29182
SRR3384913	fruit	no	16 week after full bloom	9.48344
SRR3384912	fruit	no	18 week after full bloom	10.14
SRR3384911	fruit	no	19 week after full bloom	10.6229
SRR3384910	fruit	no	20 week after full bloom	12.2065
SRR768128	whole fruit	no	25 days post anthesis	9.82944
SRR768129	whole fruit	no	35 days post anthesis	10.5601
SRR768130	whole fruit	no	60 days post anthesis	10.8149
SRR768131	whole fruit	no	87 days post anthesis	20.4496
SRR7343308	immature fruit flesh	no	immature	15.5193
SRR7343309	immature fruit flesh	no	immature	14.0887
SRR6320494	ripe fruit flesh	no	mature	15.2806
SRR5405143	ripe fruit peel	no	mature	20.2253
SRR6320572	ripe fruit peel	no	mature	21.6392
SRR7403504	fruit	uninfected	mature	18.5277
SRR7403506	fruit	uninfected	mature	18.8913
SRR7403507	fruit	uninfected	mature	18.8151
SRR7403500	fruit	infected with penicillium expansum	mature	20.4015
SRR7403501	fruit	infected with penicillium expansum	mature	17.8386
SRR7403508	fruit	infected with penicillium expansum	mature	19.1386
SRR7403502	fruit	infected with penicillium expansum	mature	19.3247
SRR7403503	fruit	infected with penicillium expansum	mature	19.577
SRR7403505	fruit	infected with penicillium expansum	mature	18.9798
SRR1613973	Central seeds	no	20DAPF	13.5683
SRR1613974	Central seeds	no	20DAPF	14.403
SRR1613975	Central seeds	no	20DAPF	13.6106
SRR1613976	Lateral seeds	no	20DAPF	13.5084
SRR1613977	Lateral seeds	no	20DAPF	13.8293
SRR1613978	Lateral seeds	no	20DAPF	14.557
SRR3744786	stem	no	mature	20.5168
SRR3744787	stem	no	mature	19.9664
SRR3744772	stem	no	mature	20.9074
SRX765691	seedling shoot apex	no	4-6 week old seedling	14.8243
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	13.6083
SRR1089478	leaf	Virus-free	plantlets	18.1924
SRR1089477	leaf	ASGV-infected	plantlets	21.9318
SRR767660	leaf	uninfected	fully developed	9.00215
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	14.5341
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	11.7807
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	3.97487
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	6.77287
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	10.4965
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	10.9383
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	10.9851
SRR6308182	young leaf	no	immature leaves	11.2789
SRR3744769	leaf	no	mature	19.3549
SRR3744770	leaf	no	mature	20.0056
SRR3744771	leaf	no	mature	21.3943
SRR5405145	leaf	no	mature	16.5524
SRR6320561	leaf	no	mature	8.52615