Gene detail

Detail information of MD03G1272000 Annotation

Gene ID	Annotation
MD03G1272000	RING/U-box superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0291	mitochondrion RNA-directed DNA polymerase activity RNA-dependent DNA biosynthetic process integrator complex subunit 3 UV excision repair protein RAD23 regulator of Ty1 transposition protein 103 mitochondrial mRNA modification

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD03G1272000	mRNA	Chr03	35520753	35524413	+

Sequences

CDS:

MD03G1272000

ATGTTTAAGTTTTTGCACCCACTGGGATCAAATTTTTGTGGGTTTTGTGAAATGGGAGTCGAGTTTCTGATGTTTTTGGAGAAATGGGTTGGTATTTCAACAGTTGGACTTGTGTGGCTGCATGCGTTATTGGATTTTAGCTGGGTTGCGCTTAATCTGTTTGTTTTCCAACTTTCTTACGATTTAGTGCTTCTAGGAGATGTTCTTTTTGTGCATATTTGTTCTCGCTTAGTAGCTCAGAGTATGAAAAAAATGGTCAACAGTGGTACCGGAAAAGGCAGTAAGAACAAGAGAAAAGCTGACCCTGCCCCGCAGAATGCAACTAACCCTGGTTTGCCCCTAACCGTAACCCCTCAGAGCGAATTACCTTCAGAGGAATGTAGAAATTTGAGTGACAAGGTGTTAGCTCAGGCGGGGGTGGTTCAGCCAGAAGAAGTGGAAGTGGGAGCTTTTGAGTGTGCAGATTGGGATGACCCAATTGCTTGCCAGCTTGAAGAACTACTACTGTCTTATTTGCAAGCAATTTTCCGGAGTGCTATTAAGCAGGTTGCTGAACATGGGTACAGTGAGGAGGTTGCTGAAAAGGCTGTTTCGAGAGGCGGCCTTTACATTGGCGGTAAAGACCCTCTAGCAAATATTCACCTGGTGGAATACACAATGCTAGAAATGATCAGTGTGGTTAGGGAGGTAAGGCTATCCTTATCAGTTGCGGAAGCAATGTGGTGGCTGTTGATATGTGACTTAAACATTTTGCTAGCCTGCACGTCGGAAGGAGATCCATTTAGTGCTCTTGGTTCTGAAGAATCCGCTGATTCGTCTTCTCCCCAATTAAGCTCAGAGGCAAATAGCTCTGAAACCATTCTTCCAAATCCCAATGAAGCAAATTCCTCAAAGCCACTGCCTGCCTATGCTCAAAGCAATCCTCCTGAAACACTCAAATTTGGAAGTTTCCGTATACATTCCAACAGCACACATTCTCATGCACCTGAAGAGGTAACCCCTGAGAAAGATAGTTTGTCATCTATGCTAGATAGTCTGGAAAAGTGCTTAGGATTCACTGGAGAAAATGTCCAATCAAAATCTCAGACATCCACCTCTGAAGAAAAGTCAGGAGCTGGTCTAACAGGGCGCACCAAGAAAGAATTAGCAGCACTTCGTAAGAAGTCCTTCCATACGGATCGAAATTACAGCGCTTATGGGAAAAAAGGAGGCTTCAAATCAGGGAAAGTCACGATTGGTGGTTTTGTTCTGGAGAAGAGGCTAAAGCCTCCATCTGAAATTCCCGGAGGACGAGAAACAGTTGCATCCTCAAAGTTGAGTGCCAAAGCTGGATCCACCATCCCTTCTTCAGATGGAAGACATAGGGCTTCAACCAAGATTTCATCTGCTTCACTAGCAACAGGTGGCACAGTAACATTACCTATATCTTACTTGCGATCCGCAGATCCCAATCTTTCCCAGAAGTCTTGTTTGGAAAACAAATCTAGACCTAAGGCCAAGATCCCGGTTGGCACCTCTCCATCCCCCAAGACTCATGATTGCTGTGCTGGCTTGCCATGTGATGACAAGTCTCTAGGAAAGAATATCCCAAAAGATGAGATCGATGAGCTGTTTTTGAAGGTAGCTCCTCGGCTAAAGGATCTTGTTCCTCTTGATTACCGTGCTGGCATCCCATATGATAAGTCTCTAGGAAAGTATGTCGCACAAGATGAGAAGGATGAGCTGATTTTAAAACTAGTACCTCGGCTGGAGGAGCTGCAGAATGAACTAGAAAGCTGGACTAATTGGGCCAACGAGAAGATTATGCAGGTTTCTCGTAGGCTTAGTAAGGAACAACCTGAACTTAAAATACTGAGGCAAGAGAAGGCAGAAGCAGAGAAATTTAAAAAAGAGAAACAAATGTTGGAGGAGAACACTGTGAAGAGAATCTCTGAGTTGGAGAATGCCTTAAATAATGCAACTGACCAGGTTGAGAAAGCTACCTCTAATATCTGTAGGCTTGAGTTGGAGAATTCCACTCTTAAAGAGGAGAGGAGTACTGCCGAAAGAATGGCTATAGATTCGACTGCACGTCACCAGGAAGCATTAGAGAGGGAGCAGAATGCACTGAAAAAGGTCCAGGCATGGGAGGGGCAGAGGAGCGCATTGCAGGAAGAGCTTGAGACAGGAAAGAAGAAGGTGGCTGCACTGCAACAGGATTTAGCCAAGGCAAAAAATGTCCATCATCAAATCGAGGCTAGATGGAAAAGGGAGAAGATAGAAAGGGAGAAAATACTTGTGCAGGCCGACTTCATAAGAAAAGAAAGAGAACAACGTCAAGCTTTGACAAAATTGGAGGAGGACAGGATCAAACTGAGCGCAGAATATGATATGCGGGAGTATATGGAAGACATCAGAAAAGTTGAGAGCAAGTTATCAGAACTTAAGTTGAAGTCCGACTCCTCGAGAATTGCAGCACTAAGAAGGGGAGCTGCCGGAAGCTTTGGAGGTTCCCCGTCAGACAGAAAAAGTGGGAAGGCAACAAAGGGAAACCAAAACTTTACCAGCCTCAAGAAGGTAAAGAATTCCCAGGACTTGAGACAGGACCGCGAATGTGTGATGTGCCTATCTGAGGAGATGTCGGTGGTGTTCCTTCCGTGTGCACATCAGGTTGTTTGTGCAAATTGCAATGAGCTTCACAAGAAACAAGGAATGAAGGATTGCCCTTCTTGTAGGACCCCGATTCAGCGGAGGATCAACGTGCAGTATGCTCATCCTTAGCGTGTAGACCTTGTAGCGAGAACGGTGACTGGATCAATGGAGGAAACTTAGTTAAACACAATGCTATGGTGGATTTTGTCTTTCTTTTCTTTTCTGGGTCACAGACTCACAGTTCAAATGGTTTAGCTCTAAAAAGAAATAGATAGAGAGGAGTTTGTAAAGGGTAGGAT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G03000.2	1	RING/U-box superfamily protein
Arabidopsis thaliana	AT4G03000.1	1	RING/U-box superfamily protein
Prunus persica	Prupe.8G248200.4.p	1	RING/U-box superfamily protein
Prunus persica	Prupe.8G248200.2.p	1	RING/U-box superfamily protein
Prunus persica	Prupe.8G248200.6.p	1	RING/U-box superfamily protein
Prunus persica	Prupe.8G248200.5.p	1	RING/U-box superfamily protein
Prunus persica	Prupe.8G248200.3.p	1	RING/U-box superfamily protein
Prunus persica	Prupe.8G248200.1.p	1	RING/U-box superfamily protein
Rosa multiflora	Rmu_sc0008666.1_g000003.1	1	-
Rubus occidentalis	Ro02_G09643	1	-
Fragaria vesca	mrna27737.1	1	RING/U-box superfamily protein

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13920.2	zf-C3HC4_3	862	910	2.40E-12

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.551936
SRR5252888	dormant buds	no	dormant buds(0 month)	2.68942
SRR5252889	dormant buds	no	dormant buds(0 month)	1.91968
SRR5252886	dormant buds	no	dormant buds(1 months)	2.7607
SRR5252887	dormant buds	no	dormant buds(1 months)	0.843549
SRR5252884	dormant buds	no	dormant buds(2 months)	2.16715
SRR5252882	dormant buds	no	dormant buds(3 months)	2.81972
SRR5252883	dormant buds	no	dormant buds(3 months)	1.18422
SRR5252880	dormant buds	no	dormant buds(4 months)	3.57625
SRR5252881	dormant buds	no	dormant buds(4 months)	3.02592
SRR5252878	bud break	no	bud break	4.0876
SRR5252879	bud break	no	bud break	3.75567
SRR3744766	flower	no	mature	0.413782
SRR3744767	flower	no	mature	0.435745
SRR3744768	flower	no	mature	0.286977
SRR6308190	stigmas	no	open flowers	0.799641
SRR6308181	styles	no	open flowers	1.09376
SRR6308188	filaments	no	open flowers	1.09244
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.188267
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.0519575
SRR6308194	sepals	no	open flowers	0.302083
SRR6308193	receptacles	no	open flowers	0.88346
SRR6308189	ovaries	no	open flowers	0.816316
SRR3384922	fruit	no	1 week after full bloom	0.357435
SRR3384921	fruit	no	2 week after full bloom	0.35714
SRR3384920	fruit	no	3 week after full bloom	0.288262
SRR3384919	fruit	no	4 week after full bloom	0.242101
SRR3384923	fruit	no	5 week after full bloom	0.276284
SRR3384918	fruit	no	6 week after full bloom	0.12815
SRR3384917	fruit	no	8 week after full bloom	0.407035
SRR3384916	fruit	no	10 week after full bloom	0.168246
SRR3384915	fruit	no	12 week after full bloom	0.312819
SRR3384914	fruit	no	14 week after full bloom	0.165485
SRR3384913	fruit	no	16 week after full bloom	0.357342
SRR3384912	fruit	no	18 week after full bloom	0.152431
SRR3384911	fruit	no	19 week after full bloom	0.175439
SRR3384910	fruit	no	20 week after full bloom	0.206045
SRR768128	whole fruit	no	25 days post anthesis	0.66325
SRR768129	whole fruit	no	35 days post anthesis	0.327756
SRR768130	whole fruit	no	60 days post anthesis	0.488457
SRR768131	whole fruit	no	87 days post anthesis	0.367666
SRR7343308	immature fruit flesh	no	immature	0.162303
SRR7343309	immature fruit flesh	no	immature	0.323727
SRR6320494	ripe fruit flesh	no	mature	0.468169
SRR5405143	ripe fruit peel	no	mature	0.180691
SRR6320572	ripe fruit peel	no	mature	0.272253
SRR7403504	fruit	uninfected	mature	0.183471
SRR7403506	fruit	uninfected	mature	0.177659
SRR7403507	fruit	uninfected	mature	0.21094
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0.0328135
SRR1613973	Central seeds	no	20DAPF	0.419955
SRR1613974	Central seeds	no	20DAPF	0.690183
SRR1613975	Central seeds	no	20DAPF	0.583724
SRR1613976	Lateral seeds	no	20DAPF	0.496857
SRR1613977	Lateral seeds	no	20DAPF	0.50623
SRR1613978	Lateral seeds	no	20DAPF	0.631478
SRR3744786	stem	no	mature	0.513318
SRR3744787	stem	no	mature	0.470427
SRR3744772	stem	no	mature	0.580333
SRX765691	seedling shoot apex	no	4-6 week old seedling	1.80718
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	1.53371
SRR1089478	leaf	Virus-free	plantlets	0.742571
SRR1089477	leaf	ASGV-infected	plantlets	0.90515
SRR767660	leaf	uninfected	fully developed	0.645955
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	3.58184
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.5865
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.140433
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.408729
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.0686229
SRR6308182	young leaf	no	immature leaves	1.34944
SRR3744769	leaf	no	mature	0.217898
SRR3744770	leaf	no	mature	0.349469
SRR3744771	leaf	no	mature	0.356897
SRR5405145	leaf	no	mature	0.282684
SRR6320561	leaf	no	mature	0.209138