Gene detail

Detail information of MD04G1119600 Annotation

Gene ID	Annotation
MD04G1119600	C2H2 and C2HC zinc fingers superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0021	response to chitin ethylene biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1119600	mRNA	Chr04	20578572	20579129	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	C2H2

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G37430.1	1	ZAT11\|zinc finger of Arabidopsis thaliana 11
Prunus persica	Prupe.6G249300.1.p	1	C2H2-type zinc finger family protein
Pyrus communis	PCP021309.1	1	-
Pyrus x bretschneideri	Pbr020962.2	1	-
Rosa multiflora	Rmu_sc0006408.1_g000010.1	1	-
Rosa multiflora	Rmu_sc0000286.1_g000002.1	1	-
Fragaria vesca	mrna18205.1	1	C2H2-type zinc finger family protein

Gene Ontology

GO term	Description	Category
GO:0046872	metal ion binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13912.2	zf-C2H2_6	41	66	1.50E-11
PF13912.2	zf-C2H2_6	98	123	3.70E-11

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.321087
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	1.15899
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0.255781
SRR3744766	flower	no	mature	4.67246
SRR3744767	flower	no	mature	3.7812
SRR3744768	flower	no	mature	3.0801
SRR6308190	stigmas	no	open flowers	6.28454
SRR6308181	styles	no	open flowers	12.7975
SRR6308188	filaments	no	open flowers	2.72324
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	11.5126
SRR6308194	sepals	no	open flowers	3.35089
SRR6308193	receptacles	no	open flowers	0.593325
SRR6308189	ovaries	no	open flowers	8.64928
SRR3384922	fruit	no	1 week after full bloom	13.26
SRR3384921	fruit	no	2 week after full bloom	29.6474
SRR3384920	fruit	no	3 week after full bloom	2.69337
SRR3384919	fruit	no	4 week after full bloom	5.55078
SRR3384923	fruit	no	5 week after full bloom	0.910128
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0.292549
SRR3384916	fruit	no	10 week after full bloom	0.570067
SRR3384915	fruit	no	12 week after full bloom	0.224832
SRR3384914	fruit	no	14 week after full bloom	0.436111
SRR3384913	fruit	no	16 week after full bloom	0.256833
SRR3384912	fruit	no	18 week after full bloom	0.482049
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	1.03251
SRR768129	whole fruit	no	35 days post anthesis	0
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	31.8197
SRR7403501	fruit	infected with penicillium expansum	mature	33.0079
SRR7403508	fruit	infected with penicillium expansum	mature	24.7866
SRR7403502	fruit	infected with penicillium expansum	mature	14.3089
SRR7403503	fruit	infected with penicillium expansum	mature	15.6965
SRR7403505	fruit	infected with penicillium expansum	mature	12.8266
SRR1613973	Central seeds	no	20DAPF	0
SRR1613974	Central seeds	no	20DAPF	0.17425
SRR1613975	Central seeds	no	20DAPF	0.059143
SRR1613976	Lateral seeds	no	20DAPF	2.14627
SRR1613977	Lateral seeds	no	20DAPF	2.05735
SRR1613978	Lateral seeds	no	20DAPF	1.10513
SRR3744786	stem	no	mature	0.534553
SRR3744787	stem	no	mature	0.849235
SRR3744772	stem	no	mature	0.42349
SRX765691	seedling shoot apex	no	4-6 week old seedling	34.3901
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0803112
SRR1089478	leaf	Virus-free	plantlets	40.0134
SRR1089477	leaf	ASGV-infected	plantlets	136.821
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	6.34197
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.58062
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	1.72729
SRR3744770	leaf	no	mature	1.74989
SRR3744771	leaf	no	mature	2.20537
SRR5405145	leaf	no	mature	16.2125
SRR6320561	leaf	no	mature	36.7567