Gene detail

Detail information of MD04G1247600 Annotation

Gene ID	Annotation
MD04G1247600	lecithin:cholesterol acyltransferase 3

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0748	phosphatidylcholine-sterol O-acyltransferase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1247600	mRNA	Chr04	32217920	32222392	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G03310.1	1	ATLCAT3;LCAT3\|ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3;lecithin:cholesterol acyltransferase 3
Prunus persica	Prupe.6G364000.3.p	1	lecithin:cholesterol acyltransferase 3
Prunus persica	Prupe.6G364000.1.p	1	lecithin:cholesterol acyltransferase 3
Pyrus communis	PCP023378.1	1	-
Pyrus x bretschneideri	Pbr041433.1	1	-
Rosa multiflora	Rmu_sc0037294.1_g000004.1	1	-
Rosa multiflora	Rmu_sc0003550.1_g000010.1	1	-
Rubus occidentalis	Ro06_G09249	1	-
Fragaria vesca	mrna21523.1	1	lecithin:cholesterol acyltransferase 3
Vitis vinifera	GSVIVT01019050001	1	lecithin:cholesterol acyltransferase 3
Solanum lycopersicum	Solyc11g008550.1.1	1	lecithin:cholesterol acyltransferase 3
Populus trichocarpa	Potri.008G076300.1	1	lecithin:cholesterol acyltransferase 3
Nicotiana benthamiana	Niben101Scf04691g00001.1	1	Lecithin-cholesterol acyltransferase-like 4
Oryza sativa	LOC_Os09g33820.3	1	"lecithine cholesterol acyltransferase, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0006629	lipid metabolic process	biological_process
GO:0008374	O-acyltransferase activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	12.9244
SRR5252888	dormant buds	no	dormant buds(0 month)	4.39395
SRR5252889	dormant buds	no	dormant buds(0 month)	4.79761
SRR5252886	dormant buds	no	dormant buds(1 months)	7.69881
SRR5252887	dormant buds	no	dormant buds(1 months)	4.43209
SRR5252884	dormant buds	no	dormant buds(2 months)	3.70236
SRR5252882	dormant buds	no	dormant buds(3 months)	3.9317
SRR5252883	dormant buds	no	dormant buds(3 months)	4.40326
SRR5252880	dormant buds	no	dormant buds(4 months)	4.46884
SRR5252881	dormant buds	no	dormant buds(4 months)	5.62563
SRR5252878	bud break	no	bud break	9.11933
SRR5252879	bud break	no	bud break	13.7841
SRR3744766	flower	no	mature	4.6816
SRR3744767	flower	no	mature	4.55599
SRR3744768	flower	no	mature	5.38148
SRR6308190	stigmas	no	open flowers	2.25563
SRR6308181	styles	no	open flowers	3.35761
SRR6308188	filaments	no	open flowers	2.24097
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.231199
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	2.20264
SRR6308194	sepals	no	open flowers	4.8263
SRR6308193	receptacles	no	open flowers	5.84755
SRR6308189	ovaries	no	open flowers	6.61707
SRR3384922	fruit	no	1 week after full bloom	8.38398
SRR3384921	fruit	no	2 week after full bloom	10.9566
SRR3384920	fruit	no	3 week after full bloom	9.7449
SRR3384919	fruit	no	4 week after full bloom	9.36296
SRR3384923	fruit	no	5 week after full bloom	6.89212
SRR3384918	fruit	no	6 week after full bloom	6.38568
SRR3384917	fruit	no	8 week after full bloom	4.74724
SRR3384916	fruit	no	10 week after full bloom	4.33481
SRR3384915	fruit	no	12 week after full bloom	6.13354
SRR3384914	fruit	no	14 week after full bloom	4.61534
SRR3384913	fruit	no	16 week after full bloom	2.89925
SRR3384912	fruit	no	18 week after full bloom	2.15396
SRR3384911	fruit	no	19 week after full bloom	2.12027
SRR3384910	fruit	no	20 week after full bloom	0.893907
SRR768128	whole fruit	no	25 days post anthesis	13.0463
SRR768129	whole fruit	no	35 days post anthesis	10.5423
SRR768130	whole fruit	no	60 days post anthesis	4.75871
SRR768131	whole fruit	no	87 days post anthesis	5.88459
SRR7343308	immature fruit flesh	no	immature	12.684
SRR7343309	immature fruit flesh	no	immature	17.7796
SRR6320494	ripe fruit flesh	no	mature	0.288987
SRR5405143	ripe fruit peel	no	mature	2.69684
SRR6320572	ripe fruit peel	no	mature	0.752073
SRR7403504	fruit	uninfected	mature	1.78842
SRR7403506	fruit	uninfected	mature	1.64931
SRR7403507	fruit	uninfected	mature	1.70904
SRR7403500	fruit	infected with penicillium expansum	mature	0.146739
SRR7403501	fruit	infected with penicillium expansum	mature	0.217757
SRR7403508	fruit	infected with penicillium expansum	mature	0.0784895
SRR7403502	fruit	infected with penicillium expansum	mature	0.0606838
SRR7403503	fruit	infected with penicillium expansum	mature	0.135558
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	4.73049
SRR1613974	Central seeds	no	20DAPF	4.86445
SRR1613975	Central seeds	no	20DAPF	4.39809
SRR1613976	Lateral seeds	no	20DAPF	6.01858
SRR1613977	Lateral seeds	no	20DAPF	5.0728
SRR1613978	Lateral seeds	no	20DAPF	5.30591
SRR3744786	stem	no	mature	4.01782
SRR3744787	stem	no	mature	3.48671
SRR3744772	stem	no	mature	4.21946
SRX765691	seedling shoot apex	no	4-6 week old seedling	12.9586
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	12.4091
SRR1089478	leaf	Virus-free	plantlets	8.35454
SRR1089477	leaf	ASGV-infected	plantlets	11.7412
SRR767660	leaf	uninfected	fully developed	2.39283
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	7.53811
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	6.92369
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.57588
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.11379
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	4.22385
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	8.51712
SRR6308182	young leaf	no	immature leaves	15.7901
SRR3744769	leaf	no	mature	8.95778
SRR3744770	leaf	no	mature	11.6252
SRR3744771	leaf	no	mature	11.9455
SRR5405145	leaf	no	mature	7.34841
SRR6320561	leaf	no	mature	12.8822