Gene detail

Detail information of MD05G1179500 Annotation

Gene ID	Annotation
MD05G1179500	Pectin lyase-like superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0043

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1179500	mRNA	Chr05	30728599	30733872	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	PL1

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.8G206800.1.p	1	Pectin lyase-like superfamily protein
Pyrus communis	PCP013155.1	1	-
Pyrus x bretschneideri	Pbr032986.2	1	-
Rosa multiflora	Rmu_sc0011958.1_g000001.1	1	-
Fragaria vesca	mrna17555.1	1	Pectin lyase-like superfamily protein
Populus trichocarpa	Potri.002G238800.1	1	Pectin lyase-like superfamily protein
Populus trichocarpa	Potri.014G178100.1	0.632	Pectin lyase-like superfamily protein

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
K01728	pectate lyase	EC:4.2.2.2

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00544.15	Pec_lyase_C	200	368	5.70E-18

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	30.0601
SRR5252888	dormant buds	no	dormant buds(0 month)	0.128997
SRR5252889	dormant buds	no	dormant buds(0 month)	0.24906
SRR5252886	dormant buds	no	dormant buds(1 months)	0.764702
SRR5252887	dormant buds	no	dormant buds(1 months)	0.058052
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0.185964
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0.0927969
SRR5252881	dormant buds	no	dormant buds(4 months)	0.412003
SRR5252878	bud break	no	bud break	3.51228
SRR5252879	bud break	no	bud break	14.759
SRR3744766	flower	no	mature	30.4341
SRR3744767	flower	no	mature	29.3081
SRR3744768	flower	no	mature	28.6062
SRR6308190	stigmas	no	open flowers	2.66582
SRR6308181	styles	no	open flowers	8.79262
SRR6308188	filaments	no	open flowers	105.553
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.67808
SRR6308192	pollen	no	open flowers	1.12187
SRR6308191	petals	no	open flowers	120.432
SRR6308194	sepals	no	open flowers	27.415
SRR6308193	receptacles	no	open flowers	1.89577
SRR6308189	ovaries	no	open flowers	10.0161
SRR3384922	fruit	no	1 week after full bloom	5.39682
SRR3384921	fruit	no	2 week after full bloom	20.446
SRR3384920	fruit	no	3 week after full bloom	6.05633
SRR3384919	fruit	no	4 week after full bloom	12.3017
SRR3384923	fruit	no	5 week after full bloom	0.510228
SRR3384918	fruit	no	6 week after full bloom	0.973695
SRR3384917	fruit	no	8 week after full bloom	0.117147
SRR3384916	fruit	no	10 week after full bloom	0.152184
SRR3384915	fruit	no	12 week after full bloom	0.180062
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0.0482574
SRR3384911	fruit	no	19 week after full bloom	0.0925691
SRR3384910	fruit	no	20 week after full bloom	0.217437
SRR768128	whole fruit	no	25 days post anthesis	14.941
SRR768129	whole fruit	no	35 days post anthesis	11.111
SRR768130	whole fruit	no	60 days post anthesis	0.193042
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	12.5953
SRR7343309	immature fruit flesh	no	immature	13.3352
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	1.59964
SRR1613974	Central seeds	no	20DAPF	1.81378
SRR1613975	Central seeds	no	20DAPF	1.66188
SRR1613976	Lateral seeds	no	20DAPF	1.03354
SRR1613977	Lateral seeds	no	20DAPF	1.25111
SRR1613978	Lateral seeds	no	20DAPF	1.14467
SRR3744786	stem	no	mature	0.179491
SRR3744787	stem	no	mature	0.236722
SRR3744772	stem	no	mature	0.157403
SRX765691	seedling shoot apex	no	4-6 week old seedling	11.524
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	8.02621
SRR1089478	leaf	Virus-free	plantlets	1.84291
SRR1089477	leaf	ASGV-infected	plantlets	1.94935
SRR767660	leaf	uninfected	fully developed	5.09916
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	19.3124
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	13.2966
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.44271
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.772431
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.76755
SRR6308182	young leaf	no	immature leaves	8.33316
SRR3744769	leaf	no	mature	1.55003
SRR3744770	leaf	no	mature	1.41491
SRR3744771	leaf	no	mature	1.54043
SRR5405145	leaf	no	mature	2.08627
SRR6320561	leaf	no	mature	2.41759