Gene detail

Detail information of MD05G1260700 Annotation

Gene ID	Annotation
MD05G1260700	Leucine-rich repeat transmembrane protein kinase

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0191	OTU domain-containing protein 6 [EC:3.4.19.12] L-iditol 2-dehydrogenase [EC:1.1.1.14]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1260700	mRNA	Chr05	39578900	39589574	-

Sequences

CDS:

MD05G1260700

TTTTCATTCTCATTGGCTCTTATTAGGAAAAAGAGAGAGGAGAGAGAGAGGGGATGAATTTCAGAACTAGTGGGCGAAGCAGCCGCCATCTCTGATCTCTTCCTTCCAGTTTTTTTATTGCTTCTGCTTCAGCTCCTCCTCCTGCTTCAACAGCAGTCGGAATATAAGGGTTGGCCGTTTAGTTTCACGCCGTCGAGGAGAGCAAGTTCTGCACATTTACAATATGAAGATGAAGTTGATGATGAGGATACTATTACTATGCTTCCTCAGCTGCTTGTGTTTTCAGCTGTCCTTTGTTCAAAATGCTACCACTGACCCATCTGAAGTGAGGGCGTTGAACTTAATATTTGAACAATGGGACACACAAGCAATGTCGGGGCTGTGGAATATCAGCGGAAAACCCTGCAGTGGATCTGCCATCGACGGCACCGACATTGATAGCCCCAATATCAACCCAGCCATCGTTTGCAACTGTTCTTACGACAACAATGCTACATGCCACATCACCAAACTGAAAGTGCAAGCTCTGTACAAACGAGGGGTGTTTCACGAAGAACTTTTGGCTCTAAGATATCTCGCAGTTTTGAAAATCGATAAGAATTATTTCAAAGGTTCCCTACCGGCATTCGTTGGCAATATGTCTGCATTGATTGAATTGCAAATTGGCCACAATTCATTCTCTGGGCCCATCCCCAAGGAGCTTGGAAACCTTAAGGAGCTAAGTATACTGGGCTTCGGATCAAATAATTTCTCCGGAACACTCCCTCCAGAACTTGGTAATTTAGTCAAGCTCCAGCAAATTTACATGGACAGCTGTGGAGTCAGTGGTGAAATTCCTTCAACATTTGCCAAGCTAACCAGTATGCAAATCTTTTGGACATCAGACAGTCTTTTCTCAGGAAAGATTCCTGATTTCATAGGGAATTGGACACAACTCATTTCTTTGCGATTTCAAGGGAACTCTTTGGAAGGCCCAATACCAACCAGCTTTTCTCAACTGACCTCATTGAAATCTCTGCATATCAATGATATATACGATGGGAGCTCCTCTCTTGATTTCATTAAAAATATGAAGAACTTGACTGAATTAAAACTACGAAACGCATTAATCACTGGTACCATCCCATCTGATATTGGAGAATATCAAAGTCTACAGATACTGGATCTGAGTTTCAACAATTTGACAGGCCAACTCCCAAGTTCTTTGTTCACCATGAGTTCTCTTACATCCTTGTTTCTTGGAAATAATAGTCTGTCCGGACCTCTTCCGAGCCAAAAGAGCGATCGACTTCAGACTATCTTTCCCCAGTGGGTGATCACAATATCGCAACTGAACTTAGTGGTCAACAACTTCACATTTGACGAAAAAAACAAAACTACTCTTCCTGGATTGAATTGCCTCCAGAGAAATTTTCCATGCAATCGAAATGCCCCACGATATGCAAACTTCTCAATCAACTGTGGTGGACCGGAAATGAAGGGACGTGATGGCATATCGTATGAGGCCGAAGACTCAGCTCTTGGTCCAGCAACATTCAATGTAACCAGTATAGAGAATTGGGCTGTCAGCAATGTCGGTATGTTTTCTGACGGAGTGAACCGATCGTTTCTGGAAAATACCCTTGAGCAAGTCACCGGAACAGATGTGACCCCGGAGCTTTTCCAGACTTCAAGATTGTCCCCAGGATCACTGAGATACTATGGCCTGGGTCTTGAGAATGGACCTTACACTGTAACGTTGCACTTTGCAGAGACGGTTTTTGATAGGCGCATTGAGCAAACTTGGGCAAGTCTAGGACGACGTGTGTTTGATATCTATATTCAGGGTACCCGCAGGACGAGGGACTTTGAAATATCCAAGGAGGCTGGTGGGGTTAAAATAGGAATTATGGAAAGATTCAATGTTAGCGTGTCAGAGAATTATCTTGAAATTCATCTGTTCTGGGCTGGTAAGGGGACTTGTTGCATACCCGATTTTGGTGATTACGGCCCACTAATAGCAGCTGTCCATGCTGCTTCAGATTTTACACCAACAGTTTCCGGGCTTCCACCAACTACTCGAGGAAAGAAAAGCAAGACTGGATTGATAGTTGGTATTGCAGTTCCTGTTGGAGTTGGGAGCTTGCTATTAATATTTGCGATTCTATATATGAGGAGGAAAAAATCAGAAAAAGAGGACGACGATGAAGATATTCTAGGATTAGGCCCTCGACCAAATACTTTCAGTTATGCTGAGTTGAGAGCTGCAACCGAAGATTTTAATCCTTCAAATAAGTTAGGAGAAGGAGGATATGGCCCTGTTTATAAGGGTACACTTTCTGATGGGAGAGTAGTGGCTGTGAAGCAACTTTCAGTAGCATCTCACCAAGGGAAGAGTCAATTTGTATCTGAAATTGCTACCATATCTGCTGTGCAACATCGAAATCTAGTGAAATTGTATGGATGCTGCATCGAAGGCAGCCACCGCATTTTGGTTTATGAGTATCTTGAAAACAAGAGCCTTGATCAAGCACTTTTTGGAACAAGTAACTTGCACCTTGATTGGCCTACTCGATTCAATATATTGTTGGGAACAGCAAGAGGACTTGCTTACCTTCATGAGGAGTCAAGGCCAAGGATTGTACATCGAGATGTCAAAGCGAGTAATATTTTGCTCAATGCAGAACTCTCCCCAAAAATATCAGATTTTGGACTAGCAAAGCTTTATGATGACGAGAAAACCCACATCAGCACCCGGGTTGCAGGGACAATAGGCTATTTGGCACCGGAGTATGCATTGTTTGGACATTTGACAGAGAAGGTCGATGTGTTTGGTTTTGGAGTCGTCGTTTTGGAGATCCTCAGCGGGAGACCAAACTCTTACAATAACTTGGATCCAAAAAAGATTTATCTTCTTGAATGGGTATGGACTCTACATGAAAACGACCAAACTCTGGGGCTGGTGGATCCAAGATTGACAGAGTTTGATGAAACTGAAGCAACTAGATTGATACGAGCAGCTCTCTTGTGCACGCAGGGATCACCGATGGCGAGGCCATCTATGTCACGCGTGGCTGCAATGCTCTCTGGAGACATTGACTTAGGCACTGTCATGTCGAAGCCAAGTTATTTGACAGATTATGATTTTAAAGATGTAATAACATTGTCAACAAATAGTTTTTTGGTGGGGGATGATACCCCATCAACTGCATCCAAGGATAGTAATGTTCGCCTCAACTATCAGCCGGGAGGCAGCAATGCAAGTGGTGCTAACACTCCCTGGATTGACCCTGCGCCTTCTCCTGTAAATGTCACTCAATCACTGCTCACTGGCATTAGAGTAGAAGGAAGGTGATAAATGTCGGGAAATGATTTCCGCATGCTCCTTTTATCGCTTTGTGCACCCTTGTACTTGTTTTGGACCCCTTCCTTTTATATAATACACATTTTAATAAT

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:1.7.1

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP002514.1	1	-
Rubus occidentalis	Ro03_G32906	1	-
Fragaria vesca	mrna16334.1	1	Leucine-rich repeat transmembrane protein kinase
Solanum lycopersicum	Solyc07g066550.2.1	1	Leucine-rich repeat transmembrane protein kinase
Nicotiana benthamiana	Niben101Scf08564g00001.1	1	Receptor like protein kinase S.2
Oryza sativa	LOC_Os04g52600.1	1	"SHR5-receptor-like kinase, putative, expressed"
Oryza sativa	LOC_Os08g10290.1	1	"SHR5-receptor-like kinase, putative, expressed"
Oryza sativa	LOC_Os05g16824.1	1	"SHR5-receptor-like kinase, putative, expressed"
Zea mays	GRMZM2G151567_P01	1	Putative leucine-rich repeat receptor-like protein kinase family protein
Zea mays	GRMZM2G337532_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0004674	protein serine/threonine kinase activity	molecular_function
GO:0004713	protein tyrosine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006468	protein phosphorylation	biological_process
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11721.4	Malectin	408	595	1.10E-46
PF00069.21	Pkinase	681	886	6.20E-45

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.33924
SRR5252888	dormant buds	no	dormant buds(0 month)	2.33645
SRR5252889	dormant buds	no	dormant buds(0 month)	2.1494
SRR5252886	dormant buds	no	dormant buds(1 months)	1.57129
SRR5252887	dormant buds	no	dormant buds(1 months)	1.8246
SRR5252884	dormant buds	no	dormant buds(2 months)	2.12368
SRR5252882	dormant buds	no	dormant buds(3 months)	0.8916
SRR5252883	dormant buds	no	dormant buds(3 months)	1.61925
SRR5252880	dormant buds	no	dormant buds(4 months)	1.18643
SRR5252881	dormant buds	no	dormant buds(4 months)	1.56381
SRR5252878	bud break	no	bud break	3.29897
SRR5252879	bud break	no	bud break	3.5217
SRR3744766	flower	no	mature	5.59353
SRR3744767	flower	no	mature	4.99928
SRR3744768	flower	no	mature	5.26345
SRR6308190	stigmas	no	open flowers	2.02574
SRR6308181	styles	no	open flowers	1.40287
SRR6308188	filaments	no	open flowers	1.6397
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.47705
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	1.22864
SRR6308194	sepals	no	open flowers	1.53068
SRR6308193	receptacles	no	open flowers	1.35657
SRR6308189	ovaries	no	open flowers	1.70989
SRR3384922	fruit	no	1 week after full bloom	0.927341
SRR3384921	fruit	no	2 week after full bloom	2.30872
SRR3384920	fruit	no	3 week after full bloom	1.28159
SRR3384919	fruit	no	4 week after full bloom	1.95972
SRR3384923	fruit	no	5 week after full bloom	1.18421
SRR3384918	fruit	no	6 week after full bloom	0.907663
SRR3384917	fruit	no	8 week after full bloom	1.52884
SRR3384916	fruit	no	10 week after full bloom	1.64156
SRR3384915	fruit	no	12 week after full bloom	1.65453
SRR3384914	fruit	no	14 week after full bloom	1.09303
SRR3384913	fruit	no	16 week after full bloom	0.712182
SRR3384912	fruit	no	18 week after full bloom	1.13105
SRR3384911	fruit	no	19 week after full bloom	1.08481
SRR3384910	fruit	no	20 week after full bloom	4.16965
SRR768128	whole fruit	no	25 days post anthesis	1.45456
SRR768129	whole fruit	no	35 days post anthesis	0.860096
SRR768130	whole fruit	no	60 days post anthesis	1.33903
SRR768131	whole fruit	no	87 days post anthesis	0.620246
SRR7343308	immature fruit flesh	no	immature	3.55766
SRR7343309	immature fruit flesh	no	immature	5.32152
SRR6320494	ripe fruit flesh	no	mature	51.2245
SRR5405143	ripe fruit peel	no	mature	45.222
SRR6320572	ripe fruit peel	no	mature	37.5993
SRR7403504	fruit	uninfected	mature	20.9931
SRR7403506	fruit	uninfected	mature	21.5359
SRR7403507	fruit	uninfected	mature	20.3301
SRR7403500	fruit	infected with penicillium expansum	mature	4.26597
SRR7403501	fruit	infected with penicillium expansum	mature	3.31367
SRR7403508	fruit	infected with penicillium expansum	mature	3.8506
SRR7403502	fruit	infected with penicillium expansum	mature	4.16239
SRR7403503	fruit	infected with penicillium expansum	mature	4.74143
SRR7403505	fruit	infected with penicillium expansum	mature	4.40035
SRR1613973	Central seeds	no	20DAPF	0.597476
SRR1613974	Central seeds	no	20DAPF	0.768457
SRR1613975	Central seeds	no	20DAPF	0.667453
SRR1613976	Lateral seeds	no	20DAPF	0.58279
SRR1613977	Lateral seeds	no	20DAPF	0.525975
SRR1613978	Lateral seeds	no	20DAPF	0.544888
SRR3744786	stem	no	mature	14.4804
SRR3744787	stem	no	mature	14.8274
SRR3744772	stem	no	mature	15.6308
SRX765691	seedling shoot apex	no	4-6 week old seedling	4.33352
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.00753
SRR1089478	leaf	Virus-free	plantlets	4.16184
SRR1089477	leaf	ASGV-infected	plantlets	4.51267
SRR767660	leaf	uninfected	fully developed	0.545047
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0.576289
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.25465
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.34653
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.54112
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	4.76255
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.25815
SRR6308182	young leaf	no	immature leaves	1.9375
SRR3744769	leaf	no	mature	13.1885
SRR3744770	leaf	no	mature	12.4302
SRR3744771	leaf	no	mature	13.667
SRR5405145	leaf	no	mature	7.15246
SRR6320561	leaf	no	mature	5.29627