Gene detail

Detail information of MD05G1293000 Annotation

Gene ID	Annotation
MD05G1293000	Zinc-binding ribosomal protein family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0863	structural constituent of ribosome translation cytosolic large ribosomal subunit 5S rRNA binding ribosome biogenesis large subunit ribosomal protein L32e small subunit ribosomal protein S23e large subunit ribosomal protein L32 large subunit ribosomal protein L44e large subunit ribosomal protein L5e adaxial/abaxial pattern specification small nuclear ribonucleoprotein D2 root morphogenesis nucleocytoplasmic transport

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1293000	mRNA	Chr05	42442248	42443754	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G14320.1	1	Zinc-binding ribosomal protein family protein
Arabidopsis thaliana	AT3G23390.1	1	Zinc-binding ribosomal protein family protein
Prunus persica	Prupe.4G072400.1.p	1	Zinc-binding ribosomal protein family protein
Pyrus communis	PCP033762.1	1	-
Rubus occidentalis	Ro06_G13382	1	-
Populus trichocarpa	Potri.010G251500.1	1	Zinc-binding ribosomal protein family protein
Populus trichocarpa	Potri.007G071800.1	1	Zinc-binding ribosomal protein family protein
Nicotiana benthamiana	Niben101Scf05551g00009.1	1	60S ribosomal protein L44
Oryza sativa	LOC_Os07g33860.1	0.8	"60S ribosomal protein L44, putative, expressed"
Oryza sativa	LOC_Os07g33898.1	1	"60S ribosomal protein L44, putative, expressed"
Oryza sativa	LOC_Os07g33997.1	1	"60S ribosomal protein L44, putative, expressed"
Oryza sativa	LOC_Os07g26740.1	1	"60S ribosomal protein L44, putative, expressed"
Zea mays	GRMZM2G125527_P01	1	60S ribosomal protein L44
Zea mays	GRMZM2G160351_P01	1	60S ribosomal protein L44

Gene Ontology

GO term	Description	Category
GO:0003735	structural constituent of ribosome	molecular_function
GO:0005840	ribosome	cellular component
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02929	large subunit ribosomal protein L44e	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	172.792
SRR5252888	dormant buds	no	dormant buds(0 month)	76.9823
SRR5252889	dormant buds	no	dormant buds(0 month)	52.4211
SRR5252886	dormant buds	no	dormant buds(1 months)	70.4514
SRR5252887	dormant buds	no	dormant buds(1 months)	67.6119
SRR5252884	dormant buds	no	dormant buds(2 months)	74.0663
SRR5252882	dormant buds	no	dormant buds(3 months)	89.7978
SRR5252883	dormant buds	no	dormant buds(3 months)	62.741
SRR5252880	dormant buds	no	dormant buds(4 months)	133.684
SRR5252881	dormant buds	no	dormant buds(4 months)	112.362
SRR5252878	bud break	no	bud break	69.0973
SRR5252879	bud break	no	bud break	204.214
SRR3744766	flower	no	mature	43.1172
SRR3744767	flower	no	mature	46.7412
SRR3744768	flower	no	mature	41.9837
SRR6308190	stigmas	no	open flowers	31.0678
SRR6308181	styles	no	open flowers	35.4534
SRR6308188	filaments	no	open flowers	65.0292
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	23.8105
SRR6308192	pollen	no	open flowers	40.3873
SRR6308191	petals	no	open flowers	66.4025
SRR6308194	sepals	no	open flowers	50.3824
SRR6308193	receptacles	no	open flowers	69.1579
SRR6308189	ovaries	no	open flowers	50.3772
SRR3384922	fruit	no	1 week after full bloom	230.774
SRR3384921	fruit	no	2 week after full bloom	180.393
SRR3384920	fruit	no	3 week after full bloom	181.207
SRR3384919	fruit	no	4 week after full bloom	136.535
SRR3384923	fruit	no	5 week after full bloom	108.788
SRR3384918	fruit	no	6 week after full bloom	127.614
SRR3384917	fruit	no	8 week after full bloom	123.517
SRR3384916	fruit	no	10 week after full bloom	102.699
SRR3384915	fruit	no	12 week after full bloom	141.74
SRR3384914	fruit	no	14 week after full bloom	125.276
SRR3384913	fruit	no	16 week after full bloom	103.486
SRR3384912	fruit	no	18 week after full bloom	105.016
SRR3384911	fruit	no	19 week after full bloom	89.7293
SRR3384910	fruit	no	20 week after full bloom	74.7919
SRR768128	whole fruit	no	25 days post anthesis	78.294
SRR768129	whole fruit	no	35 days post anthesis	71.6792
SRR768130	whole fruit	no	60 days post anthesis	55.6318
SRR768131	whole fruit	no	87 days post anthesis	26.6054
SRR7343308	immature fruit flesh	no	immature	57.9314
SRR7343309	immature fruit flesh	no	immature	62.0637
SRR6320494	ripe fruit flesh	no	mature	21.0035
SRR5405143	ripe fruit peel	no	mature	46.1871
SRR6320572	ripe fruit peel	no	mature	52.9127
SRR7403504	fruit	uninfected	mature	24.0757
SRR7403506	fruit	uninfected	mature	27.1442
SRR7403507	fruit	uninfected	mature	29.1321
SRR7403500	fruit	infected with penicillium expansum	mature	20.5422
SRR7403501	fruit	infected with penicillium expansum	mature	26.0447
SRR7403508	fruit	infected with penicillium expansum	mature	23.896
SRR7403502	fruit	infected with penicillium expansum	mature	14.5161
SRR7403503	fruit	infected with penicillium expansum	mature	17.3188
SRR7403505	fruit	infected with penicillium expansum	mature	17.2236
SRR1613973	Central seeds	no	20DAPF	152.143
SRR1613974	Central seeds	no	20DAPF	148.158
SRR1613975	Central seeds	no	20DAPF	185.167
SRR1613976	Lateral seeds	no	20DAPF	138.865
SRR1613977	Lateral seeds	no	20DAPF	202.609
SRR1613978	Lateral seeds	no	20DAPF	170.666
SRR3744786	stem	no	mature	39.4553
SRR3744787	stem	no	mature	40.1016
SRR3744772	stem	no	mature	40.0589
SRX765691	seedling shoot apex	no	4-6 week old seedling	71.5856
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	77.2273
SRR1089478	leaf	Virus-free	plantlets	30.7685
SRR1089477	leaf	ASGV-infected	plantlets	33.3312
SRR767660	leaf	uninfected	fully developed	48.3425
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	49.7078
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	63.1552
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	83.3141
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	46.576
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	55.4292
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	29.2691
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	46.5981
SRR6308182	young leaf	no	immature leaves	110.294
SRR3744769	leaf	no	mature	40.2754
SRR3744770	leaf	no	mature	40.8783
SRR3744771	leaf	no	mature	41.967
SRR5405145	leaf	no	mature	22.357
SRR6320561	leaf	no	mature	22.7106