Gene detail

Detail information of MD05G1296600 Annotation

Gene ID	Annotation
MD05G1296600	cellulose synthase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0296	plant-type secondary cell wall biogenesis cellulose synthase (UDP-forming) activity xylan biosynthetic process cellulose synthase A [EC:2.4.1.12] xylem development glucuronoxylan metabolic process glucuronoxylan biosynthetic process cellulose biosynthetic process rhamnogalacturonan I side chain metabolic process positive regulation of abscisic acid biosynthetic process glucuronoxylan glucuronosyltransferase activity hydrogen peroxide biosynthetic process protein desumoylation response to osmotic stress Golgi apparatus plasma membrane vegetative to reproductive phase transition of meristem defense response to fungus defense response to bacterium xylosyltransferase activity galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity galacturonosyltransferase 12/13/14/15 [EC:2.4.1.-]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1296600	mRNA	Chr05	43091799	43097192	+

Sequences

CDS:

MD05G1296600

GTGGAATGAAACCCCCTCTTCCAAGGATCATTTGGAATTTTGGGTTTCTCTGGAAATTGAGGAAAGGCTTCGACTTTGTCGAAAATGATGCAGTCCGTTGCTCCTCTATGCAATGCCTGCGGCGAGCAGGTGGGGCTTGATGCTAATGGGGAGATTTTCGTGGCGTGCCACGAGTGTAATTTCCCCGTTTGCAAGGCTTGTTTTGATGATGATGTCAAGGCCGGGCGTAAATTTTGCTTAAAGTGTGGCATTCCCTATGACGATAGCTCGTTGGCGGACTATGAAACAAAGGTGTCTGGCACTCGATCCACAATGGAAGCTCACCTGAATAGTTCTCAGGATACCGGAATTCATGCTAGGCATATCAGCAGTGTGTCTACACTGGATAGTGAATTAAACGACGACTATGGCAATCCAATTTGGAAGAACAGAGTGGAGAGTTGGAAGGATAAGAAGGATAAAAAGAGCAAGAAGAAAAAGGATGCGCCTAAGGTGGAAAAAGAGGCTCAAATTCCACCTGAGCAGCAGATGACAGGGGAATATTCATCAGAGGCTGCGGAACCACTTTCAACTGTCGTTCCACTTCCACCAAACAGAATCACACCATACAGAATTGTAATAATTATGCGATTGATCATTCTTGCCCTTTTCTTCCATTATCGAGTAACAAATCCTGTTGATAGCGCTTATGGTCTATGGTTCACTTCTATCATATGTGAGATCTGGTTCGCTTTTTCTTGGGTGCTGGATCAGTTTCCCAAGTGGTCTCCAGTTAATCGGATTACATTTACTGATAGGTTATCTGCCAGGTTTGAAAGAGAGGGTGAACCCTCCGAGCTTGCTGCAGTGGATTTCTTCGTGAGTACAGTTGATCCGTTGAAAGAACCGCCCCTGATCACTGCCAATACCGTGCTTTCTATCCTTGCCGTAGACTACCCCGTGGATAAAGTTTCCTGCTATGTGTCTGATGATGGTGCTGCCATGCTTACTTTTGAATCTCTTGCCGAGACATCTGAATTTGCAAGGAAGTGGGTACCATTCTGCAAGAATTTTTCGATTGAACCACGTGCACCTGAGTTTTACTTCTCACAAAAGATTGACTACTTGAAGGATAAAGTGCAACCATCTTTTGTGAAGGAGCGCAGAGCGATGAAAAGAGATTATGAAGAATTCAAAGTGCGAATGAATGCTTTAGTTGCAAAGGCTCAAAAAACACCAGAAGAAGGATGGACTATGCAAGACGGAACACCTTGGCCAGGAAATAACCCACGGGACCATCCCGGAATGATTCAGGTTTTCCTTGGACACAGTGGCGCTTATGACATCGAGGGAAATGAACTTCCTCGATTGGTTTACGTCTCGAGAGAGAAGAGACCCGGCTATCCACATCACAAGAAAGCTGGTGCCGAAAATGCACTGGTAAGGGTGTCTGCAGTTCTCACAAATGCCCCATACATCCTCAATCTTGACTGCGATCACTACGTTAACAACAGCCAGGCAATTCGTGAGGCAATGTGTTTCTTGATGGACCCGCAAGTTGGTCGAGAAGTATGCTATGTGCAGTTTCCTCAGAGGTTCGATGGCATTGATCGCAGTGATCGATATGCCAACCGCAACACAGTTTTCTTTGATGTTAACATGAAAGGACTGGATGGAATTCAAGGTCCAGTATATGTGGGGACAGGATGTTGTTTCAATAGGCAAGCACTTTACGGCTACGGTCCTCCTTCTATGCCCACCTTACCCAAGGCTGCTTCCTCATCCTCCTGCTCATGGTGTGGTTGCTGCCCCTCTAAGAAGCCGTCGAAAGATCTGTCAGAGGCTTACCGAGATGCAAAACGCGAGGAGCTTGATGCTGCCATATTCAACCTCCGGGAGATTGAGAACTATGATGAGTTTGAGAGGTCAATGTTGATCTCGCAGACGAGCTTTGAGAAAACTTTTGGGTTATCATCCGTATTCATAGAGTCTACATTAATGGAGAACGGAGGAGTGGCCGAATCTTCCAACCCATCAACGTTGATCAAGGAGGCAATTCATGTCATTAGCTGCGGTTATGAAGAGAAGACCGCGTGGGGAAAAGAAATTGGTTGGATATATGGATCAATCACGGAGGATATCTTAACTGGTTTCAAGATGCATTGCCGTGGATGGAGGTCAATTTACTGCATGCCCTTGAGGCCTGCATTCAAAGGGTCAGCTCCCATTAACCTTTCTGATCGACTGCACCAAGTTCTTCGGTGGGCACTTGGTTCGGTGGAAATTTTCCTCAGTAGACATTGTCCTCTCTGGTATGGATTTGCAGGAGGCCGCCTCAAACTGCTTCAGAGAATGGCATATATCAACACCATTGTTTACCCCTTCACATCCCTCCCTCTCGTCGCTTACTGTACACTCCCTGCAATATGCCTTCTCACGGGAAAATTCATCATCCCAACACTTACAAACCTGGCAAGTGCCCTGTTTCTTGGCCTCTTCATCTCCATCATTGCTACAAGTGTGCTCGAGTTGCGGTGGAGTGGAGTCCGCATTGAGGATTTATGGCGTAACGAGCAGTTCTGGGTGATCGGAGGTGTTTCAGCCCATCTCTTCGCCGTCTTCCAAGGTTTCTTAAAGATGTTGGCCGGAATTGACACCAACTTCACCGTCACAACCAAATCAGCCGAGGACACAGAATTTGGAGAGCTCTATCTGATCAAATGGACCACACTTTTGATTCCCCCCACTACACTCCTCATTGTCAACATGGTTGGTGTTGTAGCTGGATTTTCGGATGCCCTTAACAAGGGATACGAAGCTTGGGGGCCACTTTTCGGGAAGGTTTTCTTCGCCTTCTGGGTGATTCTTCATCTCTATCCCTTCCTCAAAGGTCTCATGGGACGCCAAAACCGGACTCCAACCATCGTTATTTTATAA

Protein:

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GT2

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Fragaria vesca	mrna29698.1	1	cellulose synthase family protein
Oryza sativa	LOC_Os01g54620.1	1	"CESA4 - cellulose synthase, expressed"
Zea mays	GRMZM2G055795_P01	1	Cellulose synthase catalytic subunit 11
Zea mays	GRMZM2G037413_P01	1	Cellulose synthase catalytic subunit 11

Gene Ontology

GO term	Description	Category
GO:0030244	cellulose biosynthetic process	biological_process
GO:0016020	membrane	cellular component
GO:0016760	cellulose synthase (UDP-forming) activity	molecular_function

KEGG

KO	Description	Enzyme
K10999	cellulose synthase A	EC:2.4.1.12

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14569.2	zf-UDP	6	58	1.30E-13

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.27601
SRR5252888	dormant buds	no	dormant buds(0 month)	1.31072
SRR5252889	dormant buds	no	dormant buds(0 month)	2.21432
SRR5252886	dormant buds	no	dormant buds(1 months)	1.52625
SRR5252887	dormant buds	no	dormant buds(1 months)	1.03225
SRR5252884	dormant buds	no	dormant buds(2 months)	1.1775
SRR5252882	dormant buds	no	dormant buds(3 months)	0.82668
SRR5252883	dormant buds	no	dormant buds(3 months)	0.73995
SRR5252880	dormant buds	no	dormant buds(4 months)	0.64824
SRR5252881	dormant buds	no	dormant buds(4 months)	1.34092
SRR5252878	bud break	no	bud break	1.05654
SRR5252879	bud break	no	bud break	2.44082
SRR3744766	flower	no	mature	0.831899
SRR3744767	flower	no	mature	0.811962
SRR3744768	flower	no	mature	0.715886
SRR6308190	stigmas	no	open flowers	3.1677
SRR6308181	styles	no	open flowers	4.80462
SRR6308188	filaments	no	open flowers	1.22006
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.315387
SRR6308192	pollen	no	open flowers	1.43079
SRR6308191	petals	no	open flowers	0.992256
SRR6308194	sepals	no	open flowers	1.16393
SRR6308193	receptacles	no	open flowers	0.807265
SRR6308189	ovaries	no	open flowers	6.76092
SRR3384922	fruit	no	1 week after full bloom	0.690937
SRR3384921	fruit	no	2 week after full bloom	1.1368
SRR3384920	fruit	no	3 week after full bloom	0.684878
SRR3384919	fruit	no	4 week after full bloom	0.754404
SRR3384923	fruit	no	5 week after full bloom	1.36543
SRR3384918	fruit	no	6 week after full bloom	1.49425
SRR3384917	fruit	no	8 week after full bloom	1.82255
SRR3384916	fruit	no	10 week after full bloom	0.845589
SRR3384915	fruit	no	12 week after full bloom	0.62888
SRR3384914	fruit	no	14 week after full bloom	0.554476
SRR3384913	fruit	no	16 week after full bloom	0.816351
SRR3384912	fruit	no	18 week after full bloom	0.949968
SRR3384911	fruit	no	19 week after full bloom	1.11687
SRR3384910	fruit	no	20 week after full bloom	0.437239
SRR768128	whole fruit	no	25 days post anthesis	2.40004
SRR768129	whole fruit	no	35 days post anthesis	0.732112
SRR768130	whole fruit	no	60 days post anthesis	1.28883
SRR768131	whole fruit	no	87 days post anthesis	0.415762
SRR7343308	immature fruit flesh	no	immature	0.163145
SRR7343309	immature fruit flesh	no	immature	1.13892
SRR6320494	ripe fruit flesh	no	mature	0.941168
SRR5405143	ripe fruit peel	no	mature	0.726524
SRR6320572	ripe fruit peel	no	mature	0.957769
SRR7403504	fruit	uninfected	mature	0.36884
SRR7403506	fruit	uninfected	mature	0.422094
SRR7403507	fruit	uninfected	mature	0.30841
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.0424922
SRR7403502	fruit	infected with penicillium expansum	mature	0.229969
SRR7403503	fruit	infected with penicillium expansum	mature	0.0733876
SRR7403505	fruit	infected with penicillium expansum	mature	0.0329833
SRR1613973	Central seeds	no	20DAPF	1.08428
SRR1613974	Central seeds	no	20DAPF	1.37043
SRR1613975	Central seeds	no	20DAPF	0.98047
SRR1613976	Lateral seeds	no	20DAPF	0.523784
SRR1613977	Lateral seeds	no	20DAPF	0.942302
SRR1613978	Lateral seeds	no	20DAPF	0.778997
SRR3744786	stem	no	mature	0.994257
SRR3744787	stem	no	mature	0.883563
SRR3744772	stem	no	mature	0.906093
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.04077
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	13.5575
SRR1089478	leaf	Virus-free	plantlets	3.89196
SRR1089477	leaf	ASGV-infected	plantlets	2.39862
SRR767660	leaf	uninfected	fully developed	3.08411
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.91444
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.55455
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	8.1565
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.17601
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	5.58727
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.275908
SRR6308182	young leaf	no	immature leaves	8.61287
SRR3744769	leaf	no	mature	0.708651
SRR3744770	leaf	no	mature	0.837725
SRR3744771	leaf	no	mature	0.890289
SRR5405145	leaf	no	mature	9.37684
SRR6320561	leaf	no	mature	4.69478