Gene detail

Detail information of MD06G1051900 Annotation

Gene ID	Annotation
MD06G1051900	ethylene responsive element binding factor 5

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0071	respiratory burst involved in defense response intracellular signal transduction response to chitin response to mechanical stimulus ethylene-activated signaling pathway ethylene biosynthetic process multicellular organism growth photoprotection response to water deprivation EREBP-like factor response to cold protein autoubiquitination response to wounding ubiquitin-protein transferase activity transcription factor activity zinc ion binding

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1051900	mRNA	Chr06	7252563	7253561	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	ERF

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G47230.1	1	ATERF5;ATERF-5;AtMACD1;ERF102;ERF5\|ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5;ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5;
Pyrus communis	PCP009253.1	1	-
Pyrus x bretschneideri	Pbr035774.1	1	-
Populus trichocarpa	Potri.001G154200.1	1	ethylene responsive element binding factor 5
Nicotiana benthamiana	Niben101Scf23241g00003.1	1	Ethylene-responsive transcription factor 5
Oryza sativa	LOC_Os04g46240.1	1	"AP2 domain containing protein, expressed"
Oryza sativa	LOC_Os02g43820.1	1	"AP2 domain containing protein, expressed"
Oryza sativa	LOC_Os10g41330.1	1	"AP2 domain containing protein, expressed"
Zea mays	GRMZM5G805505_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function
GO:0003677	DNA binding	molecular_function

KEGG

KO	Description	Enzyme
K09286	EREBP-like factor	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.16	AP2	191	241	1.40E-13

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.653687
SRR5252888	dormant buds	no	dormant buds(0 month)	1.12813
SRR5252889	dormant buds	no	dormant buds(0 month)	1.19797
SRR5252886	dormant buds	no	dormant buds(1 months)	0.238844
SRR5252887	dormant buds	no	dormant buds(1 months)	0.380767
SRR5252884	dormant buds	no	dormant buds(2 months)	0.40539
SRR5252882	dormant buds	no	dormant buds(3 months)	1.62634
SRR5252883	dormant buds	no	dormant buds(3 months)	2.32597
SRR5252880	dormant buds	no	dormant buds(4 months)	1.42021
SRR5252881	dormant buds	no	dormant buds(4 months)	2.25196
SRR5252878	bud break	no	bud break	1.21249
SRR5252879	bud break	no	bud break	0.896345
SRR3744766	flower	no	mature	1.08155
SRR3744767	flower	no	mature	1.44389
SRR3744768	flower	no	mature	1.11766
SRR6308190	stigmas	no	open flowers	3.50087
SRR6308181	styles	no	open flowers	2.04786
SRR6308188	filaments	no	open flowers	0.823595
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.175453
SRR6308194	sepals	no	open flowers	0.510274
SRR6308193	receptacles	no	open flowers	0.406856
SRR6308189	ovaries	no	open flowers	1.65167
SRR3384922	fruit	no	1 week after full bloom	4.09253
SRR3384921	fruit	no	2 week after full bloom	8.03565
SRR3384920	fruit	no	3 week after full bloom	5.62414
SRR3384919	fruit	no	4 week after full bloom	10.2241
SRR3384923	fruit	no	5 week after full bloom	9.40428
SRR3384918	fruit	no	6 week after full bloom	8.78323
SRR3384917	fruit	no	8 week after full bloom	8.32573
SRR3384916	fruit	no	10 week after full bloom	4.74232
SRR3384915	fruit	no	12 week after full bloom	3.64227
SRR3384914	fruit	no	14 week after full bloom	3.24606
SRR3384913	fruit	no	16 week after full bloom	1.46186
SRR3384912	fruit	no	18 week after full bloom	1.26635
SRR3384911	fruit	no	19 week after full bloom	2.22672
SRR3384910	fruit	no	20 week after full bloom	0.950979
SRR768128	whole fruit	no	25 days post anthesis	1.25569
SRR768129	whole fruit	no	35 days post anthesis	2.00573
SRR768130	whole fruit	no	60 days post anthesis	4.62383
SRR768131	whole fruit	no	87 days post anthesis	0.9492
SRR7343308	immature fruit flesh	no	immature	4.50433
SRR7343309	immature fruit flesh	no	immature	5.06163
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0.458574
SRR7403504	fruit	uninfected	mature	0.843398
SRR7403506	fruit	uninfected	mature	1.11366
SRR7403507	fruit	uninfected	mature	0.991711
SRR7403500	fruit	infected with penicillium expansum	mature	56.5387
SRR7403501	fruit	infected with penicillium expansum	mature	42.8608
SRR7403508	fruit	infected with penicillium expansum	mature	52.0311
SRR7403502	fruit	infected with penicillium expansum	mature	24.3394
SRR7403503	fruit	infected with penicillium expansum	mature	20.6406
SRR7403505	fruit	infected with penicillium expansum	mature	21.6079
SRR1613973	Central seeds	no	20DAPF	1.27057
SRR1613974	Central seeds	no	20DAPF	0.853515
SRR1613975	Central seeds	no	20DAPF	1.07977
SRR1613976	Lateral seeds	no	20DAPF	4.03063
SRR1613977	Lateral seeds	no	20DAPF	3.88949
SRR1613978	Lateral seeds	no	20DAPF	3.32172
SRR3744786	stem	no	mature	0.756821
SRR3744787	stem	no	mature	0.969897
SRR3744772	stem	no	mature	1.23113
SRX765691	seedling shoot apex	no	4-6 week old seedling	7.38356
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.780914
SRR1089478	leaf	Virus-free	plantlets	59.6468
SRR1089477	leaf	ASGV-infected	plantlets	123.85
SRR767660	leaf	uninfected	fully developed	0.552887
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.58774
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.38144
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.58153
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.49277
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.8804
SRR6308182	young leaf	no	immature leaves	0.683052
SRR3744769	leaf	no	mature	1.3155
SRR3744770	leaf	no	mature	1.24949
SRR3744771	leaf	no	mature	1.47082
SRR5405145	leaf	no	mature	6.49824
SRR6320561	leaf	no	mature	4.50528