Gene detail

Detail information of MD06G1077000 Annotation

Gene ID	Annotation
MD06G1077000	Stress responsive alpha-beta barrel domain protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0428	starch synthase [EC:2.4.1.21] cysteamine dioxygenase [EC:1.13.11.19] catalase [EC:1.11.1.6] aarF domain-containing kinase

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1077000	mRNA	Chr06	19075569	19078379	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G32500.1	1	Stress responsive alpha-beta barrel domain protein
Prunus persica	Prupe.5G095100.1.p	1	Stress responsive alpha-beta barrel domain protein
Pyrus communis	PCP023756.1	1	-
Pyrus x bretschneideri	Pbr011024.1	1	-
Rosa multiflora	Rmu_sc0009374.1_g000002.1	1	-
Rubus occidentalis	Ro05_G11058	1	-
Fragaria vesca	mrna32428.1	1	Stress responsive alpha-beta barrel domain protein
Vitis vinifera	GSVIVT01019803001	1	Stress responsive alpha-beta barrel domain protein
Solanum lycopersicum	Solyc12g056350.1.1	1	Stress responsive alpha-beta barrel domain protein
Populus trichocarpa	Potri.014G154900.1	1	Stress responsive alpha-beta barrel domain protein
Oryza sativa	LOC_Os03g02020.1	1	"stress responsive A/B Barrel domain containing protein, expressed"

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07876.8	Dabb	73	166	2.50E-08

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	13.8546
SRR5252888	dormant buds	no	dormant buds(0 month)	0.473044
SRR5252889	dormant buds	no	dormant buds(0 month)	0.821994
SRR5252886	dormant buds	no	dormant buds(1 months)	1.20182
SRR5252887	dormant buds	no	dormant buds(1 months)	0.638648
SRR5252884	dormant buds	no	dormant buds(2 months)	2.71979
SRR5252882	dormant buds	no	dormant buds(3 months)	1.02292
SRR5252883	dormant buds	no	dormant buds(3 months)	2.13641
SRR5252880	dormant buds	no	dormant buds(4 months)	0.680591
SRR5252881	dormant buds	no	dormant buds(4 months)	1.41643
SRR5252878	bud break	no	bud break	0.508417
SRR5252879	bud break	no	bud break	1.03359
SRR3744766	flower	no	mature	2.48802
SRR3744767	flower	no	mature	2.46698
SRR3744768	flower	no	mature	2.81372
SRR6308190	stigmas	no	open flowers	3.21923
SRR6308181	styles	no	open flowers	2.99459
SRR6308188	filaments	no	open flowers	0.693791
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.49851
SRR6308192	pollen	no	open flowers	39.7378
SRR6308191	petals	no	open flowers	2.36726
SRR6308194	sepals	no	open flowers	9.75242
SRR6308193	receptacles	no	open flowers	2.40156
SRR6308189	ovaries	no	open flowers	2.69357
SRR3384922	fruit	no	1 week after full bloom	1.19718
SRR3384921	fruit	no	2 week after full bloom	0.95031
SRR3384920	fruit	no	3 week after full bloom	0.380347
SRR3384919	fruit	no	4 week after full bloom	1.05415
SRR3384923	fruit	no	5 week after full bloom	0.668328
SRR3384918	fruit	no	6 week after full bloom	0.669588
SRR3384917	fruit	no	8 week after full bloom	0.537063
SRR3384916	fruit	no	10 week after full bloom	0.279076
SRR3384915	fruit	no	12 week after full bloom	0.24765
SRR3384914	fruit	no	14 week after full bloom	0.400308
SRR3384913	fruit	no	16 week after full bloom	0.188598
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0.169754
SRR3384910	fruit	no	20 week after full bloom	0.199369
SRR768128	whole fruit	no	25 days post anthesis	0.479244
SRR768129	whole fruit	no	35 days post anthesis	0.631537
SRR768130	whole fruit	no	60 days post anthesis	0.529416
SRR768131	whole fruit	no	87 days post anthesis	0.132832
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0.47122
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.0442439
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0.110985
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0.0949557
SRR1613973	Central seeds	no	20DAPF	0.0474563
SRR1613974	Central seeds	no	20DAPF	0.0978108
SRR1613975	Central seeds	no	20DAPF	0.0885289
SRR1613976	Lateral seeds	no	20DAPF	0.0698407
SRR1613977	Lateral seeds	no	20DAPF	0.0675344
SRR1613978	Lateral seeds	no	20DAPF	0.10339
SRR3744786	stem	no	mature	0.445241
SRR3744787	stem	no	mature	0.55095
SRR3744772	stem	no	mature	0.476226
SRX765691	seedling shoot apex	no	4-6 week old seedling	1.37394
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.68817
SRR1089478	leaf	Virus-free	plantlets	1.6811
SRR1089477	leaf	ASGV-infected	plantlets	2.96367
SRR767660	leaf	uninfected	fully developed	5.11275
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	7.91807
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	4.00359
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.61859
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.86711
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.76611
SRR6308182	young leaf	no	immature leaves	3.84056
SRR3744769	leaf	no	mature	9.84037
SRR3744770	leaf	no	mature	7.76025
SRR3744771	leaf	no	mature	8.28586
SRR5405145	leaf	no	mature	10.3628
SRR6320561	leaf	no	mature	10.3809