Gene detail

Detail information of MD06G1085500 Annotation

Gene ID	Annotation
MD06G1085500	Ribosome-inactivating protein bryodin II

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0265	intracellular signal transduction respiratory burst involved in defense response response to chitin abscisic acid-activated signaling pathway ethylene biosynthetic process ethylene-activated signaling pathway response to water deprivation hyperosmotic salinity response transcription factor activity jasmonic acid biosynthetic process response to wounding sequence-specific DNA binding response to fungus endoplasmic reticulum unfolded protein response stamen filament development response to mechanical stimulus jasmonic acid mediated signaling pathway protein autoubiquitination lipid oxidation lipoxygenase [EC:1.13.11.12]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1085500	mRNA	Chr06	20981546	20982451	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G294500.1.p	1	-
Prunus persica	Prupe.1G294700.1.p	0.848	-
Pyrus communis	PCP001408.1	1	-

Gene Ontology

GO term	Description	Category
GO:0030598	rRNA N-glycosylase activity	molecular_function
GO:0017148	negative regulation of translation	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00161.15	RIP	11	228	5.10E-37

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.582911
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0.125651
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0.127106
SRR3744766	flower	no	mature	0.295991
SRR3744767	flower	no	mature	0.303638
SRR3744768	flower	no	mature	0.750036
SRR6308190	stigmas	no	open flowers	0.179762
SRR6308181	styles	no	open flowers	0.154116
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.396269
SRR6308194	sepals	no	open flowers	0.960475
SRR6308193	receptacles	no	open flowers	0.153153
SRR6308189	ovaries	no	open flowers	0.994513
SRR3384922	fruit	no	1 week after full bloom	0.107976
SRR3384921	fruit	no	2 week after full bloom	0.701263
SRR3384920	fruit	no	3 week after full bloom	0.411649
SRR3384919	fruit	no	4 week after full bloom	0.380303
SRR3384923	fruit	no	5 week after full bloom	0.0904163
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0.145316
SRR3384916	fruit	no	10 week after full bloom	0.0943884
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0.127575
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0
SRR768129	whole fruit	no	35 days post anthesis	0
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	1.03525
SRR7403504	fruit	uninfected	mature	0.956108
SRR7403506	fruit	uninfected	mature	1.00999
SRR7403507	fruit	uninfected	mature	0.824443
SRR7403500	fruit	infected with penicillium expansum	mature	88.1877
SRR7403501	fruit	infected with penicillium expansum	mature	80.9047
SRR7403508	fruit	infected with penicillium expansum	mature	88.5593
SRR7403502	fruit	infected with penicillium expansum	mature	35.2566
SRR7403503	fruit	infected with penicillium expansum	mature	36.2399
SRR7403505	fruit	infected with penicillium expansum	mature	30.0103
SRR1613973	Central seeds	no	20DAPF	0.0639508
SRR1613974	Central seeds	no	20DAPF	0.0439357
SRR1613975	Central seeds	no	20DAPF	0
SRR1613976	Lateral seeds	no	20DAPF	0.0941154
SRR1613977	Lateral seeds	no	20DAPF	0
SRR1613978	Lateral seeds	no	20DAPF	0.0557299
SRR3744786	stem	no	mature	15.5858
SRR3744787	stem	no	mature	16.2435
SRR3744772	stem	no	mature	17.6044
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.605761
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0
SRR1089478	leaf	Virus-free	plantlets	109.558
SRR1089477	leaf	ASGV-infected	plantlets	73.1621
SRR767660	leaf	uninfected	fully developed	0.625954
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.298947
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	13.769
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.938921
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	5.32272
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	3.61775
SRR3744770	leaf	no	mature	3.62089
SRR3744771	leaf	no	mature	2.76449
SRR5405145	leaf	no	mature	3.68342
SRR6320561	leaf	no	mature	5.09448