Gene detail

Detail information of MD06G1231600 Annotation

Gene ID	Annotation
MD06G1231600	receptor-like kinase 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0649	anthocyanin accumulation in tissues in response to UV light beclin Delta24-sterol reductase [EC:1.3.1.72 1.3.1.-] xyloglucan fucosyltransferase [EC:2.4.1.-] regulation of meristem growth arogenate/prephenate dehydratase [EC:4.2.1.91 4.2.1.51]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD06G1231600	mRNA	Chr06	36265878	36269057	-

Sequences

CDS:

MD06G1231600

CACCTCACAGCCTGTACTATCTCTCTCTCTCTCTTCTTTCTCTCTCCTCAAGGGAAACCAGAAGGCCAACAAAAAGGGCCAAAAAGAAAAGAGGAAATGCAGCTCCCATAGCACTCTCTCCTCTCTCTCTCTCTCTCCTCCTCTGAGACCCATAAACCAAAACAATGTATGAACTTTGAAACCCCAGAAATCCAAACCCCCTACCCAATTCACCAAAAACACCATCTGGGTTTCCACCAAAATGCATTCCCCAAGCCAAAGGCTGTCCCTTTTCCTCTTCTCCCTGCTGGTTTTGCTCCCCATTGCAAGACCAGATCTGGCTTCTGACCGCGCCGCTCTGCTAGCCCTGCGCTCCGCCGTCGGCGGCCGAACTCTGCTATGGGATGTGAGCCAGACCAGCCCATGTTTGTGGACAGGCGTCAGCTGTGAGAACAACCGCGTCACGGTGCTTCGTCTTCCCGGCGTGGCTCTCTCCGGCATAATCCCCAGTGGCATTTTCGGAAATCTGACTAGTCTCCGCACTCTCAGTCTCCGTCTCAACGCTTTAAGAGGTCCTCTGCCTTCAGATCTCTCTGCCTGCGTTACTCTTCGTAACCTTTACTTGCAGGGCAACCTTTTCTCCGGCGAAATCCCGGAGTTTGTGTACAGTCTGCACGACTTGGTCCGGCTGAACTTGGCCTCCAACAATTTTTCCGGTGAGATCTCTCTGGGTTTCAACAATCTCACCAGGCTCAGGACTTTGTATCTCGAAAGCAACAAGCTTTCGGGGGCGATCCCGGAGCTGAAGCTGCCCAATCTCGACCAGTTCAATGTATCCAACAATTTGCTAAACGGGTCTGTTCCAAAACAGTTGCAGTCTTACTCTTCGAGCTCGTTTCTGGGTAATTCTCTATGCGGGCGTCCCCTTAATGCTTGTCCTGGAGACCGTGGCGGAGCTGCCAATCCTGCCATAGGAGGGGATATAAACATCAATGACCACCACAAAAAGAGAAAGCTTTCCGGTGGTGCTATTGCCGGTATTGTGATCGGATCTGTGTTGGCTTTTCTCGTGATTGTTATGTTTTTGATCTTTTTCTGCCGAAAGAAGAAGAGCAAGAAGACGAGCTCCGTCGACATTGCCACCGTGAAGCACCGGGAAGTCGAGATTCCTGGCGAGAAGCTGCCCGTGGAGTCTGAGAATGGAGGATATGGAAATGGGCATTCGGTGGCGGATGCTGCCGCTGCGGCGATGGTGGGGAATGGCAAAAGTGAAGCCGGTGGCGCTAGTGGTGCTAAAAAGCTGGCCTTTTTTGGCAATGCGGCGAGGGTGTTTGATCTGGAGGACTTGTTGAGAGCTTCGGCGGAGGTTTTGGGGAAGGGGACTTTTGGGACAGCGTACAAAGCGGTTCTGGAGGCTGGGACTGTGGTGGCTGTGAAGAGGCTGAAGGACGTGACGATTTCTGAGAGCGAGTTTAAGGAAAAGATTGAGGCTGTGGGAGCGAAGGATCATGAGAATTTGGTGCCTCTGAGGGCATATTATTTCAGCAGAGATGAGAAGCTTCTTGTCTATGATTACATGCCTATGGGAAGCTTATCTGCACTTTTGCATGGAAACAAAGGAGCAGGTAGGACTCCATTGAATTGGGAAATCAGGTCTGGCATTGCCCTTGGAGCTGCCCGTGGAATTGAATACCTACACTCTCAAGGTCATACTGTCTCCCACGGAAACATAAAGTCATCCAACATCCTGCTCACAAAGTCCTATGAAGCTCGGGTTTCTGACTTTGGCCTAGCGCACCTTGTTGGCCCCTCATCCACTCCCAACCGAGTTGCTGGCTACCGGGCACCGGAGGTTACTGATCCTCGCAAGGTATCCCAAAAGGCCGATGTTTATAGCTTTGGGGTGTTGCTCCTGGAGCTACTCACCGGAAAGCCCCCAACGCATGCCCTCTTGAATGAGGAAGGAGTTGACCTCCCAAGATGGGTTCAGTCCATAGTCAAAGAGGAGTGGACTTCAGAGGTTTTCGATCTTGAGCTCCTCAGGTACCAGAATGTCGAGGAGGAGATGGTTCAGCTCTTGCAACTTGCAATAGATTGTTCAGCCCAGTACCCTGACAAACGCCCTTCAATCTCCGAAGTTACAAGGCGCATTGAGGAGCTACGTCGTTCTAGCTTGCTAGATGAGCAGCCCGAGGTTGTCCATGATTTGGACGATGTGTCTTCTCGATGAGTTGAGTTGAGTTGCTCAGGGCAACGGCCCCTCGACCATCTTCCCTCATGGATTTGCAGGGAAATTCCTTGCTGTAATTTTTATTCACCCCTTTGTTCCCCATTGCTCAAGTTTTTCTAACTGCCCTTTTGGGGTGGAGATCTGTTCCATTTGCTGTTGGTGGATGATGGTTTTCTTTTCTGTAATTATTACTTCCGCCTTTGCCTTTGCCTTTGCCTTTGCCTGTATTTGTTGTTATGATTACGACTCTTTAGCTACTCGAAGTTAAGATGTGTTGGTTGCTTCATGTCTGTTCATGGTTTGGTCAAAGTTTTGTGAAATTAAGCAGACCTGCGTTGATCATTTTCCA

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:1.13.3

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP009906.1	1	-
Pyrus x bretschneideri	Pbr028360.1	1	-
Rosa multiflora	Rmu_sc0000425.1_g000007.1	1	-
Rubus occidentalis	Ro05_G03633	1	-
Fragaria vesca	mrna09354.1	1	receptor-like kinase 1
Vitis vinifera	GSVIVT01030793001	1	receptor-like kinase 1
Populus trichocarpa	Potri.015G035500.1	1	receptor-like kinase 1
Nicotiana benthamiana	Niben101Scf08804g03003.1	1	receptor-like kinase 1 LENGTH=655
Nicotiana benthamiana	Niben101Scf01940g00010.1	0.862	receptor-like kinase 1 LENGTH=655
Oryza sativa	LOC_Os03g12250.1	1	"atypical receptor-like kinase MARK, putative, expressed"
Zea mays	GRMZM2G046729_P01	1	Putative leucine-rich repeat receptor-like protein kinase family protein;
Zea mays	AC233893.1_FGP006_0.905		-

Gene Ontology

GO term	Description	Category
GO:0004713	protein tyrosine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006468	protein phosphorylation	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.21	Pkinase	368	627	1.90E-38

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	32.6836
SRR5252888	dormant buds	no	dormant buds(0 month)	14.0705
SRR5252889	dormant buds	no	dormant buds(0 month)	12.8722
SRR5252886	dormant buds	no	dormant buds(1 months)	14.5549
SRR5252887	dormant buds	no	dormant buds(1 months)	9.00941
SRR5252884	dormant buds	no	dormant buds(2 months)	3.80061
SRR5252882	dormant buds	no	dormant buds(3 months)	5.44544
SRR5252883	dormant buds	no	dormant buds(3 months)	2.48475
SRR5252880	dormant buds	no	dormant buds(4 months)	12.4996
SRR5252881	dormant buds	no	dormant buds(4 months)	13.9871
SRR5252878	bud break	no	bud break	41.1389
SRR5252879	bud break	no	bud break	47.4568
SRR3744766	flower	no	mature	7.69857
SRR3744767	flower	no	mature	8.34203
SRR3744768	flower	no	mature	7.9424
SRR6308190	stigmas	no	open flowers	5.82326
SRR6308181	styles	no	open flowers	8.20015
SRR6308188	filaments	no	open flowers	16.0131
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.52443
SRR6308192	pollen	no	open flowers	0.411883
SRR6308191	petals	no	open flowers	11.8413
SRR6308194	sepals	no	open flowers	7.2226
SRR6308193	receptacles	no	open flowers	13.1473
SRR6308189	ovaries	no	open flowers	15.3729
SRR3384922	fruit	no	1 week after full bloom	21.5689
SRR3384921	fruit	no	2 week after full bloom	32.4168
SRR3384920	fruit	no	3 week after full bloom	33.0073
SRR3384919	fruit	no	4 week after full bloom	36.7778
SRR3384923	fruit	no	5 week after full bloom	31.4272
SRR3384918	fruit	no	6 week after full bloom	42.9738
SRR3384917	fruit	no	8 week after full bloom	33.2726
SRR3384916	fruit	no	10 week after full bloom	36.4562
SRR3384915	fruit	no	12 week after full bloom	34.7647
SRR3384914	fruit	no	14 week after full bloom	29.69
SRR3384913	fruit	no	16 week after full bloom	21.682
SRR3384912	fruit	no	18 week after full bloom	31.0158
SRR3384911	fruit	no	19 week after full bloom	18.4314
SRR3384910	fruit	no	20 week after full bloom	20.1613
SRR768128	whole fruit	no	25 days post anthesis	45.7881
SRR768129	whole fruit	no	35 days post anthesis	66.3538
SRR768130	whole fruit	no	60 days post anthesis	69.6628
SRR768131	whole fruit	no	87 days post anthesis	51.2647
SRR7343308	immature fruit flesh	no	immature	18.8093
SRR7343309	immature fruit flesh	no	immature	24.576
SRR6320494	ripe fruit flesh	no	mature	0.722774
SRR5405143	ripe fruit peel	no	mature	4.60911
SRR6320572	ripe fruit peel	no	mature	3.14911
SRR7403504	fruit	uninfected	mature	1.41693
SRR7403506	fruit	uninfected	mature	1.7213
SRR7403507	fruit	uninfected	mature	1.84382
SRR7403500	fruit	infected with penicillium expansum	mature	0.0457766
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.0979425
SRR7403502	fruit	infected with penicillium expansum	mature	0.227171
SRR7403503	fruit	infected with penicillium expansum	mature	0.126866
SRR7403505	fruit	infected with penicillium expansum	mature	0.0760249
SRR1613973	Central seeds	no	20DAPF	11.6717
SRR1613974	Central seeds	no	20DAPF	10.9537
SRR1613975	Central seeds	no	20DAPF	13.9641
SRR1613976	Lateral seeds	no	20DAPF	12.6021
SRR1613977	Lateral seeds	no	20DAPF	10.4273
SRR1613978	Lateral seeds	no	20DAPF	9.8389
SRR3744786	stem	no	mature	3.54586
SRR3744787	stem	no	mature	3.82261
SRR3744772	stem	no	mature	4.35734
SRX765691	seedling shoot apex	no	4-6 week old seedling	47.2647
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	50.0786
SRR1089478	leaf	Virus-free	plantlets	53.5602
SRR1089477	leaf	ASGV-infected	plantlets	47.0252
SRR767660	leaf	uninfected	fully developed	36.837
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	102.786
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	65.3263
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	44.2791
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.73836
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	11.1616
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	12.1576
SRR6308182	young leaf	no	immature leaves	44.5289
SRR3744769	leaf	no	mature	4.03064
SRR3744770	leaf	no	mature	3.87049
SRR3744771	leaf	no	mature	3.17785
SRR5405145	leaf	no	mature	10.8067
SRR6320561	leaf	no	mature	9.92448