Gene detail

Detail information of MD07G1035900 Annotation

Gene ID	Annotation
MD07G1035900	Leucine-rich repeat protein kinase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0013

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD07G1035900	mRNA	Chr07	2924642	2930860	-

Sequences

CDS:

MD07G1035900

GGAACTCAGCACATATAACAATGGCGAGAACTCGTTTCCTCTCGTCGACAACTTTGTCGTTGCTGCTATTCCAATACTGTTGTGTATACATACCTATCTTAATAACGGGTTCCGTAGCAGCACAAACCAACATCAGCACAGATCAGTCTGCTCTTCTTGCCCTCAAATCCCATATCACCATTGATCCTCAAAACATCTTGACCACCAACTGGTCTACCTCCATTTCCGACATTTGCAACTGGGTTGGCGTTACTTGCAGTGCACGCCACCTTAGAGTGACAACCTTGAATCTCTCCTACATGGGTCTCACTGGAACCATCCCTCCCCACCTAGGCAACCTCTCATTTCTTGTTCAATTGGAATTCAGAAACAACAGTTTTGGTGGTACCTTGCCCCCGGAATTGTCTAATCTACGCAGGCTGAAGTTGATTAGCTTTGAATTCAATGACTTTGAAGGAACCATTCCATCATGGTTCGGGTTGTTATCTAAACTTCAAACCTTCAATTTGTACGGTAATCAATTTTCAGGTCCCATACCAAACGCCATCTTCAACTTATCTGCACTTCAAGTACTTAATCTAAGAAGCAACCAGCTATCCGGTACCATACCAAGAGAAATCGAGAGGTTAACAGTGTTGCAAGAGATATTACTTGGAAATAACAATTTCAAAGGTAGCATAGCAAGAGAAATTGGGAACTTAACCATGCTCAGGAATATATACCTTGATTTTAACATGCTCGAAGAAATTCCAAACTTGATTGGCAGTAAAGATGAGGTGGAGAAGTTGTATGTGCAGGCTAATGCCCTAAAAGGCCCCATTCCTTTGGCTATCTTCAACATGTCCTCTTTGACAATTTTGGCTCTAAACGGAAACAACTTAAGTGGTAGTTTTCCGGACAATATATGCCAACATCTTCCAAGCATCCAGGTGTTAAATTCGGCTCACAACCAGTTTGATGGTCCACTTCCACACAAGTTATGGCAGTGCAAAGAGCTCCTTAGTTTGGTATTGGACTATAATAATTTCAGTGGAAGCATACCAAGAAGTATTGGAAACTTGACCCAGTTAACACAGCTTGGTTTTGGCAACAACACCTTAATAGGTATTATACCATATGAAGTTGGCAATCTTCAAAGTCTACAGTATTTGTCACTGGATTTTAACAATCTCAATGGCCCCTTTCCATCCACAATCTTCAATATGTCAAAGATGACAGTACTTTCACTTGTTGGTAATCAACTCTCAGGTAGCCTCCCAGCAAACATAGGCCTTGGAATTCCGAACCTACAAAGTATATATTTAGGAATGAATGAACTCAGCGGAGTCATTCCCAATTTTATCTCCAATGGCTCTAAGCTCAATCATGTAGACATTTCCGACAATTCATTTTCCGGGTTTATTCCTAACAAACTATGTGCCTTAGCAAACCTTGAGTATCTTAGCTTATACCAAAATAATTTGACGGTTGACACTTCAACTCCAGAAGTAAATTTCCTTTCTTGTTTAGGTAATCTTAGAAATCTTGGGGTACTCATCCTGGGACGTAATCCTTTAAACGCTCCTCTTCCTATTTCTTTTCAGAATTACTCTACATCGCTTCAAAAAATTTCTTTAAGCGAATGCAAATTGAAGGGTAGCATTCCCAATGATATTGGCAACTTGAGCAGCTTGATATCCTTAAACCTGGTATCCAATCAATTGAGCGGGTTAATTCCAACTTCGATAGGAAGACTAGGGAGTCTCCAAGGTTTGTATTTGGTTGATAACAAGTTGCAAGGATATATTCCCGATAAACTTTGTCAACTAAACAAACTTTCTGTATTATATTTGAGTCAGAATCAACTTTCTGGTTTTATACCTTCTTGCTTAGGCAATCTATCTGCAAATCTTGGAATTCTATCATTAGCCTCCAATTTGTTAACTTCTACACTGCCATCTACATTGTGGGAACTAGAACAAGTCTGGTTCTTCAACTTGTCATCAAATCTTCTAAATGGATCTCTGTCACAAGATATCGGCCAGTTGAAAGTTTTGTCATACATGGATCTATCAAGCAACAATTTATTTGGTGTTATACCAAGCAGCGTTGGGGATCTTCTACATTTAATTAGTCTCTCCTTGGCAGATAATAATTTTGAAGGCCCTATTCCCAGTTCATTCGGCAAATTGACAGGCCTGATACAGTTGGATTTATCCAAGAACAGTTTGTCTGAAGCAATTCCAAAGTCGCTAGAAGCATTCTTGAATCTGAAGTACCTGAATTTTTCTTTCAACCAACTCCAAGGGGAAATTCCAGAAGGCGGACCTTTCAAAAACTTCTCTGCTCCATCATTTGTCTCGAATAAGGCGTTGTGTGGTGCAGCTCGATTCCATGTCCCACCATGCAAAAACAATACACTTCAACCAAATTCAAGGAAAGCTGGTTCATCCAACTTGAAATATATTATTCCAGCAATAATCATAGCAACAATATTCCTAGTAGCCTTTGTGTCTATACTGCAAAGGAAAAGGAAAATTGAAGATGCAACAGAGGCTACCGTGTTGCCTCAATCTCTTTGGAGAAGAGTTTCGCACCTGGAACTTCTAAGGGCGACAAATGGATTTAACGATAGCAACTTACTTGGAAGTGGGGGTTTTGGTTCAGTATATAAAGGGACACTCTCAGATGGGATAGATGTTGCAGTAAAGATTTTCGATTTGCAGCTAGAAGGGGCTTTCAAGAGTTTTGAGAGGGAATGTGAAACGCTAAGTAATATTCGGCACCGAAATCTTATCAAAATCATTAGCTGTTGCAGTCAATTGGATTTCAAAGCCTTGGTACTGAACTATATGCCTAATGGTAGCCTTGAGAAGTGGTTGTATTCTCAAAACTTTTCTTTTAATATCCTAAAGAGGTTGAATATAATGGTAGATGTTGCATTGGCATTGGAATATCTACACCATGGTTATTCAGTGCCAATTGTCCATTGTGATTTGAAGCCAAGCAATATCCTACTAGATGATGATATGGTTGCACATGTTGCGGATTTTGGCATTGCAAAACTCTTGGGTTTCGGGGATTCCATGACCCGAACCATGACCCTAGCCACAGTTGGGTATATGGCTCCAGAGTACGGGATGGATGGAATTGTTTCTACGCAAGGGGATGTGTACAGTTTTGGTATTGTAGTCATGGAAACATTCACAAAAATGAAGCCTACGAATGAAATGTTTGTTGAGGAAATGAATCTAAGGCAATGGGTTGCAAATTCACTTTCATCAGATGCAATAGCTGAAGTTGTGGATGCCAATTTACTTGTAACACAAGAGGAAGATCCTGGTTTTGTGACTAAGATAGATTGCTTATCTTCCATTATGCGATTAGCTCTTGCTTGCTGTGCAGAGCTACCAGGCGAGAGAATAAACATGCAAGAAGCTGTAGCCACACTCAAAAAAATAAAAATCAAGTTTTTGCGGGATGCTGCAAGAAGTGTGCAGTTAAACCGTCCTCTTGTTCATGCACTTTGATAGAGTTCTTAATGTATGGGTCCTCGTGTATGCATTTTGATTCAGTTTCAGTCCTTATTTGATGCATTAGTATTTGAAACAATTGTATATTGGCTTGAAGTATATAGTGGAAAGTCCAGACTGATTGAT

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:1.12.4

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP005643.1	1	-
Pyrus x bretschneideri	Pbr041765.1	1	-
Rubus occidentalis	Ro07_G34189	1	-
Fragaria vesca	mrna28939.1	1	Leucine-rich repeat protein kinase family protein
Vitis vinifera	GSVIVT01016080001	1	Leucine-rich repeat protein kinase family protein
Solanum lycopersicum	Solyc02g031790.1.1	1	Leucine-rich repeat protein kinase family protein
Populus trichocarpa	Potri.011G068500.1	1	Leucine-rich repeat protein kinase family protein
Nicotiana benthamiana	Niben101Scf02156g14003.1	1	Receptor-like protein kinase 2
Oryza sativa	LOC_Os11g46970.1	0.649	"receptor-like protein kinase 5 precursor, putative, expressed"
Oryza sativa	LOC_Os11g47240.1	0.745	"leucine-rich repeat receptor protein kinase EXS precursor,putative, expressed"
Oryza sativa	LOC_Os01g12790.1	1	"receptor protein kinase, putative"
Oryza sativa	LOC_Os11g46980.1	1	"receptor-like protein kinase 2 precursor, putative"
Oryza sativa	LOC_Os11g47180.1	1	"receptor-like protein kinase 2 precursor, putative, expressed"
Oryza sativa	LOC_Os11g47030.1	1	"receptor protein kinase, putative"

Gene Ontology

GO term	Description	Category
GO:0004674	protein serine/threonine kinase activity	molecular_function
GO:0004713	protein tyrosine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006468	protein phosphorylation	biological_process
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
K13420	LRR receptor-like serine/threonine-protein kinase FLS2	EC:2.7.11.1

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.21	Pkinase	863	1135	7.30E-42

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.0640562
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.0249624
SRR5252886	dormant buds	no	dormant buds(1 months)	0.0547453
SRR5252887	dormant buds	no	dormant buds(1 months)	0.0872753
SRR5252884	dormant buds	no	dormant buds(2 months)	0.0464596
SRR5252882	dormant buds	no	dormant buds(3 months)	0.0465964
SRR5252883	dormant buds	no	dormant buds(3 months)	0.0507747
SRR5252880	dormant buds	no	dormant buds(4 months)	0.0465036
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0.0463189
SRR5252879	bud break	no	bud break	0.744759
SRR3744766	flower	no	mature	0.00963197
SRR3744767	flower	no	mature	0.016815
SRR3744768	flower	no	mature	0.025196
SRR6308190	stigmas	no	open flowers	0.0373828
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.0997795
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.0412993
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.0319194
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0.0654265
SRR3384921	fruit	no	2 week after full bloom	0
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0.0384066
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0.0587013
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0.0231928
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0
SRR768129	whole fruit	no	35 days post anthesis	0
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.0121314
SRR7403506	fruit	uninfected	mature	0.012815
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0.0259331
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0.0260362
SRR1613973	Central seeds	no	20DAPF	0
SRR1613974	Central seeds	no	20DAPF	0
SRR1613975	Central seeds	no	20DAPF	0
SRR1613976	Lateral seeds	no	20DAPF	0
SRR1613977	Lateral seeds	no	20DAPF	0.00372092
SRR1613978	Lateral seeds	no	20DAPF	0
SRR3744786	stem	no	mature	0.0396346
SRR3744787	stem	no	mature	0.0391857
SRR3744772	stem	no	mature	0.0586262
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.109177
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0764174
SRR1089478	leaf	Virus-free	plantlets	0.0842113
SRR1089477	leaf	ASGV-infected	plantlets	0.130644
SRR767660	leaf	uninfected	fully developed	0.256421
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0.271212
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.0310737
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.334677
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.0544796
SRR6308182	young leaf	no	immature leaves	0.134086
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0.0553779