Gene detail

Detail information of MD07G1058500 Annotation

Gene ID	Annotation
MD07G1058500	vesicle-associated membrane protein 727

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0654	vesicle-associated membrane protein 72 mitotic nuclear division regulation of cell growth regulation of multicellular organism growth positive regulation of microtubule depolymerization protein targeting to vacuole drought recovery vesicle-mediated transport

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD07G1058500	mRNA	Chr07	5428591	5431873	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G54300.2	1	ATVAMP727;VAMP727;VAMP727\|vesicle-associated membrane protein 727;
Arabidopsis thaliana	AT3G54300.1	1	ATVAMP727;VAMP727;VAMP727\|vesicle-associated membrane protein 727;
Pyrus communis	PCP020517.1	1	-
Rosa multiflora	Rmu_sc0005044.1_g000001.1	1	-
Rubus occidentalis	Ro07_G21997	1	-
Vitis vinifera	GSVIVT01010710001	1	vesicle-associated membrane protein 727
Nicotiana benthamiana	Niben101Scf03993g03013.1	1	Vesicle-associated membrane protein 727
Oryza sativa	LOC_Os08g44430.2	1	"vesicle-associated membrane protein 727, putative, expressed"
Zea mays	GRMZM2G167836_P01	1	vesicle-associated membrane protein 727

Gene Ontology

GO term	Description	Category
GO:0016192	vesicle-mediated transport	biological_process
GO:0016021	integral component of membrane	cellular component

KEGG

KO	Description	Enzyme
K08511	vesicle-associated membrane protein 72	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13774.2	Longin	32	96	1.00E-19

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	18.6831
SRR5252888	dormant buds	no	dormant buds(0 month)	15.4291
SRR5252889	dormant buds	no	dormant buds(0 month)	13.8115
SRR5252886	dormant buds	no	dormant buds(1 months)	14.4522
SRR5252887	dormant buds	no	dormant buds(1 months)	15.8859
SRR5252884	dormant buds	no	dormant buds(2 months)	10.9208
SRR5252882	dormant buds	no	dormant buds(3 months)	17.3562
SRR5252883	dormant buds	no	dormant buds(3 months)	19.3716
SRR5252880	dormant buds	no	dormant buds(4 months)	12.781
SRR5252881	dormant buds	no	dormant buds(4 months)	10.9198
SRR5252878	bud break	no	bud break	15.0753
SRR5252879	bud break	no	bud break	15.5095
SRR3744766	flower	no	mature	26.7909
SRR3744767	flower	no	mature	28.8092
SRR3744768	flower	no	mature	29.3082
SRR6308190	stigmas	no	open flowers	26.9213
SRR6308181	styles	no	open flowers	24.598
SRR6308188	filaments	no	open flowers	19.2056
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	24.5271
SRR6308192	pollen	no	open flowers	20.1464
SRR6308191	petals	no	open flowers	21.0648
SRR6308194	sepals	no	open flowers	24.3893
SRR6308193	receptacles	no	open flowers	21.37
SRR6308189	ovaries	no	open flowers	25.1628
SRR3384922	fruit	no	1 week after full bloom	18.5379
SRR3384921	fruit	no	2 week after full bloom	21.0054
SRR3384920	fruit	no	3 week after full bloom	21.879
SRR3384919	fruit	no	4 week after full bloom	26.3949
SRR3384923	fruit	no	5 week after full bloom	25.8279
SRR3384918	fruit	no	6 week after full bloom	24.1927
SRR3384917	fruit	no	8 week after full bloom	22.0822
SRR3384916	fruit	no	10 week after full bloom	20.7564
SRR3384915	fruit	no	12 week after full bloom	24.6403
SRR3384914	fruit	no	14 week after full bloom	22.5524
SRR3384913	fruit	no	16 week after full bloom	27.2153
SRR3384912	fruit	no	18 week after full bloom	23.1786
SRR3384911	fruit	no	19 week after full bloom	27.0127
SRR3384910	fruit	no	20 week after full bloom	18.9827
SRR768128	whole fruit	no	25 days post anthesis	15.2535
SRR768129	whole fruit	no	35 days post anthesis	20.2879
SRR768130	whole fruit	no	60 days post anthesis	19.3622
SRR768131	whole fruit	no	87 days post anthesis	17.2
SRR7343308	immature fruit flesh	no	immature	28.4519
SRR7343309	immature fruit flesh	no	immature	23.286
SRR6320494	ripe fruit flesh	no	mature	30.6238
SRR5405143	ripe fruit peel	no	mature	23.7632
SRR6320572	ripe fruit peel	no	mature	22.188
SRR7403504	fruit	uninfected	mature	22.5658
SRR7403506	fruit	uninfected	mature	21.7586
SRR7403507	fruit	uninfected	mature	21.5015
SRR7403500	fruit	infected with penicillium expansum	mature	29.8394
SRR7403501	fruit	infected with penicillium expansum	mature	30.3593
SRR7403508	fruit	infected with penicillium expansum	mature	28.5361
SRR7403502	fruit	infected with penicillium expansum	mature	22.717
SRR7403503	fruit	infected with penicillium expansum	mature	23.7024
SRR7403505	fruit	infected with penicillium expansum	mature	23.8398
SRR1613973	Central seeds	no	20DAPF	18.7878
SRR1613974	Central seeds	no	20DAPF	20.0463
SRR1613975	Central seeds	no	20DAPF	18.093
SRR1613976	Lateral seeds	no	20DAPF	21.4708
SRR1613977	Lateral seeds	no	20DAPF	22.4841
SRR1613978	Lateral seeds	no	20DAPF	23.8946
SRR3744786	stem	no	mature	29.8401
SRR3744787	stem	no	mature	31.9342
SRR3744772	stem	no	mature	32.5736
SRX765691	seedling shoot apex	no	4-6 week old seedling	13.5384
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	13.8185
SRR1089478	leaf	Virus-free	plantlets	11.3303
SRR1089477	leaf	ASGV-infected	plantlets	11.2497
SRR767660	leaf	uninfected	fully developed	12.865
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	5.75108
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	9.15159
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	17.8093
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	19.1149
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	16.2971
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	17.3057
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	23.0467
SRR6308182	young leaf	no	immature leaves	16.7079
SRR3744769	leaf	no	mature	22.9613
SRR3744770	leaf	no	mature	22.6838
SRR3744771	leaf	no	mature	22.4125
SRR5405145	leaf	no	mature	16.7121
SRR6320561	leaf	no	mature	28.6171