Gene detail

Detail information of MD07G1172400 Annotation

Gene ID	Annotation
MD07G1172400	Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0677	negative regulation of short-day photoperiodism histone H3-K9 demethylation negative regulation of long-day photoperiodism JMJ C2H2 crooked neck UV excision repair protein RAD23 unidimensional cell growth response to brassinosteroid gravitropism cysteine biosynthetic process proteasome binding nucleus ubiquitin binding nucleotidyltransferase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD07G1172400	mRNA	Chr07	24961209	24968468	-

Sequences

CDS:

MD07G1172400

ATGGGTGATTTTGAAAGACCCAGTTGGCTCGAAGGGTTGCCATTGGCACCCGTCTTCCGGCCGACGCATACTGAATTCGCAGACCCGATTGCTTATATATCGAAAATCGAGAAGGAAGCTAGTGGATTTGGTATTTGCAAGATTATCCCACCATTGCCAAAACCCTCAAAAAGATATGTTTTTAGCAACTTGAATAAGTCACTTTTGAAGTGTCCAGAATTGGGTAGTGATGTAAATTATTTAGAGGGTTGTTCTCCGATGAGTACGGGTTCTGGGGATGGTGGTAATGATGGGGAGGCTAGGGCAGTCTTTACCACAAGGCACCAAGAATTGGGTCAGAGTGTGAAAAAGGTGAAAGGGGCAGTAGTTCAGAATCCGCCTTCGGGTGTTGATAAGCAAGTGTGGCAAAGTGGGGAAATTTATACTTTGGAGCAGTTTGAAACTAAGTCTAGGGCTTTTGCAAGGAGCATGCTAGGTTCAATTAAGGAGGTTACCCCATTGGTTATAGAGGAAATGTTTTGGAAGGCAGCTTCTGAGAAGCCAATATATATTGAGTATGCAAATGATGTGCCTGGGTCTGCTTTTGAAGAGCCTGTGGGACAATTCCGCTCTTCTCACAGGCGGAGGCGGAAGAGGAACTCCTACCAGAGAAGAAATGAAATCTCTGATAGCAAGAAAGGTGAAATTATCAGTATCAGCGAAAGAAACTCCCATATTGAGGAAGTTAAGAATGCTACTCATATGAATGTTTCGGATACATGTTCAGAGGCATCCAAATCATCTACTGCTCCAGAAATATTATCAGCAGATGAAACTCCCCAATCATCTAGGCAAAAAAATCCAAATTCATGTTGTGATATGGAAGGTACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTACAAGTGATTGCACGTTCACCTGGTTCACTTACTCGTTTCATGCCCGATGATATCCCGGGTGTTACTTCTCCTATGGTTTACATTGGCATGTTGTTCAGTTGGTTTGCTTGGCACGTTGAAGATCATGAGCTTCACAGTATGAATTTTCTTCACACTGGATCTTCAAAGACTTGGTATTCTGTTCCAGGCGATTATGCATTTGATTTTGAGGAACTTATTCGCACTGAGGCATTTGGTAGTAATCTTGACCGCCTAGCAGCTGCTCTCTCACTATTGGGCAATAAAACAACTTTAATTTCACCTGAGGCTGTTGTTGCAGCAGGGATTCCTTGTTGCAGGTTAATACAGAACTCTGGTGAATTTGTTGTGACTTTTCCAAGGGCTTACCATGTAGGATTCAGCCACGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACACCACAATGGCTTAAAGTAGCTAAAGAAGCTGCAGTACGTAGAGCTGCTATGAATTACCTTCCTATGCTCTCCCATCAACAGCTGCTATACCTCTTGACCATGTCTTTTGTTTCGAGGGTGCCAAGGTCCCTACTACCAGGTGTGCGAAGTTCGCGTAGGAGAGATCGGCAAAAGGAAGAAAAGGAGTTTTCAGTCAAGAAGGCTTTTATTGAAGATATATTAAAAGAAAACAATGTGTTGTCTGTCCTTCTTGGAAAAGAATCAAGTTACCACGCAGTATTATGGAACCATGATTTACTTCCATATACAAGTAAAGATTCCGTAACACCCAGTGGTGGTGCTGCTGTTGATATGAATCCAAAGGAAGATGCTACCCATATTCAGTGTGGAAATTACGATAATGATCAGAAAATGCTGATTGACGAGATGAGTTTGTATATGGAAAATATGAATGATTTGTATTTGGGAAGTGATGATTTATCACGGGACTTTCAAGTCGACTCTGGCACATTGGCATGCGTGGCTTGTGGTATACTTGGGTTTCCATTTATGTCTGTTGTGCAACCATCTGAGAAAGCATCAATGAAACTGCAAACTGAAAATTTTACCGCTCAAGGTTCCCCTGGCATTTCAGGACTTGAAAAGTCTCATTCGTTTCCAGACTGTCATGCATCAGTCATGGGATGTGTTACAGAAGAGGACCTCGTTTCTGTTCCCAACTTTTTCCCACCTGCGAAAGATCCCCTAATTCCTTCCACAGACAATCTAAAAAGGGGTTGGAATACTGTTAATAAGTTTCTGAGACCAAGGAGTTTCTGCCTTGAGCACGCTGTGGAAATTGTGGACCTGTTGCAGTGCAAAGGTGGAGCGAACATGCTTGTAATTTGCCATTCTGACTATCAGAAAATAAAAGCTCCGGCTGCAGCAATTGCAGAGGAGATTGGTTGCTCTTTCAATTATAATGAGGTTCCATTGGATAATGCATCACAGGAAGATCTGAATTTGATAGAGCTTGCTGTTGATGATGAACGTGATGAATGTGGAGAAGACTGGACCTCGAAGTTGGGTATCAACCTACGCTACTGTGTCAAGGTCAGAAAGAATTCGTCCTCAAAGCAAGTCCGGCATGCATTGACATTGGGTGGTTTGTTCTCCAAACAAAGTCCCAACTCAAATTTTCTGGCCGTCAAATGGCAATCAAGAAGATCTCGCTCTAAAAAGCTTAATCATCCAGTGGATTGTAAACCATGTGAGAACATTGAGGAAAAGGATGAAGTAGTGTGTGGAAGGTCAGATGGGGCCTCTTTTAAGAGGGAAGAAAAAATAATTCAATATTCAAGAAGGAAGTCGAAGCTTAAAGTAGGGAGTTCTACAGGAGCGGGTAGGGTCTGTGGGCACCCTGGTACAGGTGTTGAGGGTGGTAAAGATAGTAGAATGGCATCAGAAAGCAACATTTGCAACAATGGGAATTCCACAAGCAGTTGTGCAAGATTTGATTCCTCTGCGTCAAGCGGAATGTCTGAAATGTATCCTGTTGTCCAGATGTCTGAAGCAACCAGGGATATCAGTTTGTACTCTACTCCTTCACAAGTTGTGGATACACTTACCACTGCCATGTTAATAGCTGGTAGTGTTGAGGCACAGGTTGATAATCACAGTTTTGAAGAAAGAAACATGAACGGTGAAGGTTGTAAGTTTGCATCAAGAAATATTTCTGATGTGCAAGATGAGATGAGGATACTTGAAGAAGCCAGTCAAAGAAAGTCTGCTACTCCACCTGTCATTGCAGCTGATGAAACGGTTCCAATGCAAATAGAGGAGCAGAAAATGGAAAAAATTAACAATACCAGTGACAATTGTAATCTAGTATCGGAAGGGCAGTCCCAAGTTATGGCTGGCGTATCTGTTCTTGCCGAGACAACAAACTTATGTGCTGCCGACTCATTTGTTACAAGTTCTGAACCACAGATGGTGAATACAGTCCTAGAGAAATCTTGCATAAGCAATGAAGTTTGTGATTCCATGACTTCGGATGATGAAGTGCAGCAAGAAATCGAAACTACCAACAGAAGTAAAAACAAGGCGCCATTTCCATGTGGTTCCCATAATGCTGAAGACTCGAATGATGATGTATCTTTAGTATTCAAACTGGAAGAAGAAATTAAAACTCCGAAAGGAGAAAATGAGGAACCCAGTTTAAGTCCTAGAAGACAACTAATTGAGCCCTCTCCTGTTTCGGTGGAAGGAACTTCTGGAGCTTCAAGAGAGCTCTGTGCTGCAGCAGATTTTTGCCCTGGTCCAATTTCACACAGTGAAGAATTTCTAACTGCAGATAGGAGTGGGGGGGGACATGTCTCAACTTCATTGACACAAATGGAAATAATTCAACCTTGTATCTCAGTGGAAGAATCTTCTGAAGTGCCAAGGGGAGGCTCTTCTGTGGAAGGCACAGATGATGGTGTGACTTCAGACACTGTAGTGCAGCAAGAAGTCCAGACTACAAATGGAGCTATAGAGGCACCCATACTTAGTCTCATCATAGAAAGAGAAATGCAGCCCACACCTCGCTTGGTTGAAGAATTTGAGGTTCCCAGAGTGACCTGTGAAACAATAAACATCAGCGGTTCTATGGCCTTGGATGAAGGGTGGAAAAATCGTACTACAAATGGTATTGAGGAACTCATTCCTAGTCGAGATACTTCAAAATGCCAACCATCTCCTTCAATCCAAACATATTCTAGAGCTAAAAGAAAGCCTCATGCTGCTCCAGACTTACGCAATGGTGGTAAGGTTTGCTTATCTCTACATGATAAAGAGATGGAAAACATCGGGTCCTCAAGTGCGGTTGCACCAAGTCCTGAAATGAGAAGAAAAAGAAAGAGAGAACTGGAGCAAATAATAGATGATAACCTCGAATTCAATGGATTTATTAGGGGGCCGTGTGAGGGGTTGAGACCAAGGGCTGGGAAAGATGCAACGAGTACAAGTGGGATGGACAACATCCAAGAAGAGGTGGAGGAGAAACCGGTGACAAAGAAGGTGAAGAAACCTTCAGATGTTCCTGTTCCTCCCAAGAAAGAACACGCAAGGAAGTCTCACAGGTGCGACATAGAAAGCTGCCGGATGAGGTTTGCAGCAAAGGCGGAGCTAATGTTGCACAAGCGTAACCGCTGCCCACATGAAGGGTGTGGCAAGAGGTTCAGTTCCCACAAGTACGCAGTGAGTCACAGCCGTGTGCATGACGATGATAGGCCCCTCAAGTGCCCATGGAAAGGCTGCTCCATGTCGTTCAAGTGGGCATGGGCCCGCACTGAGCACATACGTGTGCACACCGGAGAGCGGCCATACCAGTGCAAGGTTGAGGGATGTGGCCTATTCTTCAGGTTTGTATCAGATTATAGCCGTCACCGCCGGAAAACAGGGCATTATGTGAGCTAA

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	C2H2
Epigenetic Regulators	JMJ

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G04240.1	1	ELF6\|EARLY FLOWERING 6
Prunus persica	Prupe.2G211400.1.p	1	Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein
Prunus persica	Prupe.2G211400.2.p	0.941	Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein
Pyrus communis	PCP006839.1	1	-
Rosa multiflora	Rmu_sc0000174.1_g000009.1	1	-
Rubus occidentalis	Ro07_G16487	1	-
Fragaria vesca	mrna23255.1	1	Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein
Vitis vinifera	GSVIVT01016246001	1	Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein
Populus trichocarpa	Potri.008G037800.1	1	Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein
Nicotiana benthamiana	Niben101Scf00751g06003.1	1	Zinc finger protein 143
Nicotiana benthamiana	Niben101Scf18328g00009.1	0.863	Zinc finger protein 143

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function
GO:0003676	nucleic acid binding	molecular_function
GO:0046872	metal ion binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02373.18	JmjC	327	447	1.10E-34

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.69505
SRR5252888	dormant buds	no	dormant buds(0 month)	4.89067
SRR5252889	dormant buds	no	dormant buds(0 month)	4.65587
SRR5252886	dormant buds	no	dormant buds(1 months)	4.63383
SRR5252887	dormant buds	no	dormant buds(1 months)	6.12338
SRR5252884	dormant buds	no	dormant buds(2 months)	8.31741
SRR5252882	dormant buds	no	dormant buds(3 months)	6.2128
SRR5252883	dormant buds	no	dormant buds(3 months)	4.65906
SRR5252880	dormant buds	no	dormant buds(4 months)	6.23526
SRR5252881	dormant buds	no	dormant buds(4 months)	6.26359
SRR5252878	bud break	no	bud break	4.05938
SRR5252879	bud break	no	bud break	3.65499
SRR3744766	flower	no	mature	1.98706
SRR3744767	flower	no	mature	2.02263
SRR3744768	flower	no	mature	1.75505
SRR6308190	stigmas	no	open flowers	1.06605
SRR6308181	styles	no	open flowers	0.74946
SRR6308188	filaments	no	open flowers	0.289439
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.8351
SRR6308192	pollen	no	open flowers	2.75676
SRR6308191	petals	no	open flowers	0.43397
SRR6308194	sepals	no	open flowers	1.14132
SRR6308193	receptacles	no	open flowers	0.670809
SRR6308189	ovaries	no	open flowers	0.68198
SRR3384922	fruit	no	1 week after full bloom	0.898464
SRR3384921	fruit	no	2 week after full bloom	0.866437
SRR3384920	fruit	no	3 week after full bloom	0.544938
SRR3384919	fruit	no	4 week after full bloom	0.53221
SRR3384923	fruit	no	5 week after full bloom	0.601881
SRR3384918	fruit	no	6 week after full bloom	0.959344
SRR3384917	fruit	no	8 week after full bloom	0.857409
SRR3384916	fruit	no	10 week after full bloom	0.628323
SRR3384915	fruit	no	12 week after full bloom	0.557569
SRR3384914	fruit	no	14 week after full bloom	0.704629
SRR3384913	fruit	no	16 week after full bloom	0.559724
SRR3384912	fruit	no	18 week after full bloom	0.452821
SRR3384911	fruit	no	19 week after full bloom	0.434308
SRR3384910	fruit	no	20 week after full bloom	0.571286
SRR768128	whole fruit	no	25 days post anthesis	0.84801
SRR768129	whole fruit	no	35 days post anthesis	0.693016
SRR768130	whole fruit	no	60 days post anthesis	0.472025
SRR768131	whole fruit	no	87 days post anthesis	1.53051
SRR7343308	immature fruit flesh	no	immature	2.12069
SRR7343309	immature fruit flesh	no	immature	1.92218
SRR6320494	ripe fruit flesh	no	mature	0.46448
SRR5405143	ripe fruit peel	no	mature	1.44697
SRR6320572	ripe fruit peel	no	mature	1.13745
SRR7403504	fruit	uninfected	mature	0.754459
SRR7403506	fruit	uninfected	mature	0.624138
SRR7403507	fruit	uninfected	mature	0.684053
SRR7403500	fruit	infected with penicillium expansum	mature	1.12767
SRR7403501	fruit	infected with penicillium expansum	mature	0.836722
SRR7403508	fruit	infected with penicillium expansum	mature	0.703717
SRR7403502	fruit	infected with penicillium expansum	mature	1.10758
SRR7403503	fruit	infected with penicillium expansum	mature	1.02005
SRR7403505	fruit	infected with penicillium expansum	mature	0.975427
SRR1613973	Central seeds	no	20DAPF	1.85221
SRR1613974	Central seeds	no	20DAPF	2.25215
SRR1613975	Central seeds	no	20DAPF	2.07042
SRR1613976	Lateral seeds	no	20DAPF	2.13455
SRR1613977	Lateral seeds	no	20DAPF	1.87997
SRR1613978	Lateral seeds	no	20DAPF	2.3742
SRR3744786	stem	no	mature	2.0589
SRR3744787	stem	no	mature	2.02803
SRR3744772	stem	no	mature	2.24185
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.50799
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	1.61468
SRR1089478	leaf	Virus-free	plantlets	1.13628
SRR1089477	leaf	ASGV-infected	plantlets	1.83626
SRR767660	leaf	uninfected	fully developed	1.53794
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0.101803
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.3552
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.4138
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.63184
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.04715
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.38865
SRR6308182	young leaf	no	immature leaves	2.03305
SRR3744769	leaf	no	mature	2.40537
SRR3744770	leaf	no	mature	2.40707
SRR3744771	leaf	no	mature	2.62337
SRR5405145	leaf	no	mature	1.51254
SRR6320561	leaf	no	mature	1.12157