Gene detail

Detail information of MD07G1204400 Annotation

Gene ID	Annotation
MD07G1204400	Mitochondrial glycoprotein family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0188	single-strand DNA-binding protein histone lysine methylation

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD07G1204400	mRNA	Chr07	28195984	28197686	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G55605.1	1	Mitochondrial glycoprotein family protein
Prunus persica	Prupe.2G240700.1.p	1	Mitochondrial glycoprotein family protein
Pyrus communis	PCP002273.1	1	-
Pyrus x bretschneideri	Pbr011398.1	1	-
Rosa multiflora	Rmu_sc0011394.1_g000008.1	1	-
Rubus occidentalis	Ro07_G07778	1	-
Fragaria vesca	mrna20853.1	1	Mitochondrial glycoprotein family protein
Vitis vinifera	GSVIVT01016468001	1	Mitochondrial glycoprotein family protein
Solanum lycopersicum	Solyc03g079930.2.1	1	Mitochondrial glycoprotein family protein
Populus trichocarpa	Potri.010G198600.1	1	Mitochondrial glycoprotein family protein
Nicotiana benthamiana	Niben101Scf02653g04017.1	1	Mitochondrial glycoprotein family protein LENGTH=250
Oryza sativa	LOC_Os06g22070.1	1	"mitochondrial glycoprotein, putative, expressed"
Oryza sativa	LOC_Os01g05010.1	1	"mitochondrial glycoprotein, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0005759	mitochondrial matrix	cellular component

KEGG

KO	Description	Enzyme
K15414	"complement component 1 Q subcomponent-binding protein, mitochondrial;Tissue distribution: peripheral blood cells; Link module: BX7B"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02330.12	MAM33	72	251	1.40E-50

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	16.8698
SRR5252888	dormant buds	no	dormant buds(0 month)	6.31769
SRR5252889	dormant buds	no	dormant buds(0 month)	7.84905
SRR5252886	dormant buds	no	dormant buds(1 months)	8.14168
SRR5252887	dormant buds	no	dormant buds(1 months)	6.0571
SRR5252884	dormant buds	no	dormant buds(2 months)	8.29131
SRR5252882	dormant buds	no	dormant buds(3 months)	10.0977
SRR5252883	dormant buds	no	dormant buds(3 months)	10.3559
SRR5252880	dormant buds	no	dormant buds(4 months)	21.5383
SRR5252881	dormant buds	no	dormant buds(4 months)	17.9848
SRR5252878	bud break	no	bud break	13.9738
SRR5252879	bud break	no	bud break	44.9587
SRR3744766	flower	no	mature	6.01923
SRR3744767	flower	no	mature	6.35744
SRR3744768	flower	no	mature	7.41902
SRR6308190	stigmas	no	open flowers	3.87777
SRR6308181	styles	no	open flowers	6.38847
SRR6308188	filaments	no	open flowers	21.6731
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	3.9185
SRR6308192	pollen	no	open flowers	3.53822
SRR6308191	petals	no	open flowers	15.0509
SRR6308194	sepals	no	open flowers	7.79273
SRR6308193	receptacles	no	open flowers	35.1655
SRR6308189	ovaries	no	open flowers	9.76813
SRR3384922	fruit	no	1 week after full bloom	43.8441
SRR3384921	fruit	no	2 week after full bloom	26.5888
SRR3384920	fruit	no	3 week after full bloom	17.9344
SRR3384919	fruit	no	4 week after full bloom	22.527
SRR3384923	fruit	no	5 week after full bloom	22.5873
SRR3384918	fruit	no	6 week after full bloom	14.4299
SRR3384917	fruit	no	8 week after full bloom	13.2234
SRR3384916	fruit	no	10 week after full bloom	17.8265
SRR3384915	fruit	no	12 week after full bloom	30.5835
SRR3384914	fruit	no	14 week after full bloom	22.037
SRR3384913	fruit	no	16 week after full bloom	14.566
SRR3384912	fruit	no	18 week after full bloom	17.9861
SRR3384911	fruit	no	19 week after full bloom	13.1106
SRR3384910	fruit	no	20 week after full bloom	13.5069
SRR768128	whole fruit	no	25 days post anthesis	16.0129
SRR768129	whole fruit	no	35 days post anthesis	25.644
SRR768130	whole fruit	no	60 days post anthesis	12.8984
SRR768131	whole fruit	no	87 days post anthesis	6.6266
SRR7343308	immature fruit flesh	no	immature	9.3214
SRR7343309	immature fruit flesh	no	immature	18.6206
SRR6320494	ripe fruit flesh	no	mature	7.80442
SRR5405143	ripe fruit peel	no	mature	10.7611
SRR6320572	ripe fruit peel	no	mature	3.1294
SRR7403504	fruit	uninfected	mature	8.2153
SRR7403506	fruit	uninfected	mature	10.7936
SRR7403507	fruit	uninfected	mature	10.4972
SRR7403500	fruit	infected with penicillium expansum	mature	9.55478
SRR7403501	fruit	infected with penicillium expansum	mature	11.2251
SRR7403508	fruit	infected with penicillium expansum	mature	11.3573
SRR7403502	fruit	infected with penicillium expansum	mature	16.5739
SRR7403503	fruit	infected with penicillium expansum	mature	20.4732
SRR7403505	fruit	infected with penicillium expansum	mature	15.3174
SRR1613973	Central seeds	no	20DAPF	68.2481
SRR1613974	Central seeds	no	20DAPF	63.897
SRR1613975	Central seeds	no	20DAPF	71.5862
SRR1613976	Lateral seeds	no	20DAPF	48.1349
SRR1613977	Lateral seeds	no	20DAPF	60.9592
SRR1613978	Lateral seeds	no	20DAPF	56.5982
SRR3744786	stem	no	mature	5.8042
SRR3744787	stem	no	mature	7.37735
SRR3744772	stem	no	mature	5.94607
SRX765691	seedling shoot apex	no	4-6 week old seedling	27.9987
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	37.6992
SRR1089478	leaf	Virus-free	plantlets	3.18907
SRR1089477	leaf	ASGV-infected	plantlets	3.98546
SRR767660	leaf	uninfected	fully developed	5.38688
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	29.1224
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.38492
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	6.96072
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	10.0058
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	17.0077
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.5802
SRR6308182	young leaf	no	immature leaves	45.3893
SRR3744769	leaf	no	mature	4.8999
SRR3744770	leaf	no	mature	3.69308
SRR3744771	leaf	no	mature	4.56848
SRR5405145	leaf	no	mature	21.2046
SRR6320561	leaf	no	mature	10.1677