Gene detail

Detail information of MD07G1212800 Annotation

Gene ID	Annotation
MD07G1212800	GATA type zinc finger transcription factor family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0075	anchored component of plasma membrane leucocyanidin oxygenase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD07G1212800	mRNA	Chr07	29072245	29074953	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	LIM

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G55770.2	1	WLIM2b\|WLIM2b
Arabidopsis thaliana	AT3G55770.3	1	WLIM2b\|WLIM2b
Arabidopsis thaliana	AT3G55770.4	1	WLIM2b\|WLIM2b
Arabidopsis thaliana	AT3G55770.5	1	WLIM2b\|WLIM2b
Arabidopsis thaliana	AT3G55770.1	1	WLIM2b\|WLIM2b
Arabidopsis thaliana	AT2G39900.1	1	WLIM2a\|WLIM2a
Arabidopsis thaliana	AT3G55770.7	0.685	WLIM2b\|WLIM2b
Prunus persica	Prupe.2G245000.4.p	1	GATA type zinc finger transcription factor family protein
Prunus persica	Prupe.2G245000.5.p	1	GATA type zinc finger transcription factor family protein
Prunus persica	Prupe.2G245000.2.p	1	GATA type zinc finger transcription factor family protein
Prunus persica	Prupe.2G245000.3.p	1	GATA type zinc finger transcription factor family protein
Prunus persica	Prupe.2G245000.1.p	1	GATA type zinc finger transcription factor family protein
Rubus occidentalis	Ro07_G07812	1	-
Vitis vinifera	GSVIVT01016382001	1	GATA type zinc finger transcription factor family protein
Populus trichocarpa	Potri.010G193800.2	1	GATA type zinc finger transcription factor family protein
Nicotiana benthamiana	Niben101Scf05017g04013.1	1	LIM zinc-binding domain-containing Nebulette
Nicotiana benthamiana	Niben101Scf05766g00007.1	0.786	LIM zinc-binding domain-containing Nebulette
Oryza sativa	LOC_Os03g15940.1	1	"OsWLIM2 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function

KEGG

KO	Description	Enzyme
K09377	cysteine and glycine-rich protein	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00412.18	LIM	10	65	3.90E-12
PF00412.18	LIM	109	164	1.70E-10

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	12.8164
SRR5252888	dormant buds	no	dormant buds(0 month)	1.63983
SRR5252889	dormant buds	no	dormant buds(0 month)	2.84948
SRR5252886	dormant buds	no	dormant buds(1 months)	1.38872
SRR5252887	dormant buds	no	dormant buds(1 months)	2.95187
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0.443252
SRR5252883	dormant buds	no	dormant buds(3 months)	0.563498
SRR5252880	dormant buds	no	dormant buds(4 months)	1.47456
SRR5252881	dormant buds	no	dormant buds(4 months)	2.61873
SRR5252878	bud break	no	bud break	10.281
SRR5252879	bud break	no	bud break	16.1235
SRR3744766	flower	no	mature	2.83166
SRR3744767	flower	no	mature	3.43589
SRR3744768	flower	no	mature	2.61301
SRR6308190	stigmas	no	open flowers	6.99957
SRR6308181	styles	no	open flowers	9.42171
SRR6308188	filaments	no	open flowers	16.2848
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.6401
SRR6308192	pollen	no	open flowers	0.885453
SRR6308191	petals	no	open flowers	12.2279
SRR6308194	sepals	no	open flowers	9.60654
SRR6308193	receptacles	no	open flowers	6.26775
SRR6308189	ovaries	no	open flowers	10.5876
SRR3384922	fruit	no	1 week after full bloom	29.3261
SRR3384921	fruit	no	2 week after full bloom	35.4122
SRR3384920	fruit	no	3 week after full bloom	33.6202
SRR3384919	fruit	no	4 week after full bloom	38.7946
SRR3384923	fruit	no	5 week after full bloom	22.7036
SRR3384918	fruit	no	6 week after full bloom	34.4291
SRR3384917	fruit	no	8 week after full bloom	21.3162
SRR3384916	fruit	no	10 week after full bloom	25.6963
SRR3384915	fruit	no	12 week after full bloom	22.6059
SRR3384914	fruit	no	14 week after full bloom	21.7164
SRR3384913	fruit	no	16 week after full bloom	18.4687
SRR3384912	fruit	no	18 week after full bloom	18.4055
SRR3384911	fruit	no	19 week after full bloom	7.87033
SRR3384910	fruit	no	20 week after full bloom	11.1151
SRR768128	whole fruit	no	25 days post anthesis	20.3682
SRR768129	whole fruit	no	35 days post anthesis	39.8047
SRR768130	whole fruit	no	60 days post anthesis	21.276
SRR768131	whole fruit	no	87 days post anthesis	14.9777
SRR7343308	immature fruit flesh	no	immature	15.1267
SRR7343309	immature fruit flesh	no	immature	20.4059
SRR6320494	ripe fruit flesh	no	mature	0.389784
SRR5405143	ripe fruit peel	no	mature	1.8291
SRR6320572	ripe fruit peel	no	mature	2.02034
SRR7403504	fruit	uninfected	mature	0.767321
SRR7403506	fruit	uninfected	mature	0.932146
SRR7403507	fruit	uninfected	mature	0.818044
SRR7403500	fruit	infected with penicillium expansum	mature	1.88402
SRR7403501	fruit	infected with penicillium expansum	mature	1.1772
SRR7403508	fruit	infected with penicillium expansum	mature	1.69726
SRR7403502	fruit	infected with penicillium expansum	mature	0.574102
SRR7403503	fruit	infected with penicillium expansum	mature	0.732829
SRR7403505	fruit	infected with penicillium expansum	mature	0.741066
SRR1613973	Central seeds	no	20DAPF	18.6989
SRR1613974	Central seeds	no	20DAPF	20.0055
SRR1613975	Central seeds	no	20DAPF	18.344
SRR1613976	Lateral seeds	no	20DAPF	18.4267
SRR1613977	Lateral seeds	no	20DAPF	17.5017
SRR1613978	Lateral seeds	no	20DAPF	17.0848
SRR3744786	stem	no	mature	3.2978
SRR3744787	stem	no	mature	2.94695
SRR3744772	stem	no	mature	2.78117
SRX765691	seedling shoot apex	no	4-6 week old seedling	26.8087
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	22.794
SRR1089478	leaf	Virus-free	plantlets	7.95841
SRR1089477	leaf	ASGV-infected	plantlets	6.27614
SRR767660	leaf	uninfected	fully developed	10.0872
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	17.7179
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	8.34105
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	13.9011
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.57232
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.84107
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.97368
SRR6308182	young leaf	no	immature leaves	28.4865
SRR3744769	leaf	no	mature	1.50347
SRR3744770	leaf	no	mature	1.13811
SRR3744771	leaf	no	mature	1.32589
SRR5405145	leaf	no	mature	4.96589
SRR6320561	leaf	no	mature	10.9291