Gene detail

Detail information of MD08G1034300 Annotation

Gene ID	Annotation
MD08G1034300	GYF domain-containing protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0677	negative regulation of short-day photoperiodism histone H3-K9 demethylation negative regulation of long-day photoperiodism JMJ C2H2 crooked neck UV excision repair protein RAD23 unidimensional cell growth response to brassinosteroid gravitropism cysteine biosynthetic process proteasome binding nucleus ubiquitin binding nucleotidyltransferase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD08G1034300	mRNA	Chr08	2410041	2417811	-

Sequences

CDS:

MD08G1034300

TCTTACCTCACTATCAAAACGCAAAAGGGTTTCTTTGGCTTGCTCGCTCTCTGCAACTTCAACTGATCATCCATGGCCGACCTCTCCAGCTCAGCCTCTCGCCGCCATCTCTCCGTCACCACTCCGCCCCAGATCTCCAAAGGTGGACAAGGTTCTGAGAATCTTATTCCCCTTTCACCGCAGTGGCTTCTACCTAAGCCGGGGGAGAGTAAGACAGGAATGTTAACTGGGGAAAAACCTCCCAGCCCAAATCCATCCTTTGGCAGTCGCTTGGATACCACGAAATCATCAGGTAATGGTGATGAAATTCGTGATACCCAGAAGAAGGATGTTTTCAGGCCATCTTTGATGGATATGGAAGCTGGTGGTCGTCGTGAATGCTGGCGTGATGAAGAAAGAGACACCAACTCCTCAGGACGCAAAGATCGTTGGAGGGATGGGGATAAAGAAGTTGGTGACACTCGCAGGATGGATCGATGGATGGAAAATTCATCTGCAAAGCACTTTGGAGAAGCACGTCGTGCCCCACCTGAGCGGTGGACTGACTCAAGTAACAAGGAATCCAATTATGAGCAACGGCGAGAGAGCAAATGGAACACACGCTGGGGGCCTAATGACAAGGAGGCAGAAGGTTTTCCTGACAAGTGGGCAGACTCTGGTAGAGATGGTCTGCATCTTGATAAGAGTTTGTCTCATGTTGGAAATCATGTAAAGGATGAGAAAGATGGGGATCACTACCGACCTTGGAGATCAAACTCCTCCCAAGCCCGGGGAAGGGGAGATCCTTCTTATAACCAGACTTTATCAGCAAACAAGCATGCTCCTACACATTCATCTAATTGGGGGCGTGGAGAAATTACACCTCCCAGCTTTTCTCTTGGTCGTGGAAGGGGTAGCTCTGGTGGAGGCTTTATGAACAGCAGTCCTACTATTCCTCAGTCTATAGGAACTGTATTGGACAAAGTTGAAAGTGAACATGGAGAGCCTTATCCATTAAGGTATAGTAGGACGAAGCTGCTTGATGTATACAGGAAGGCTGATATGAAATCATATCAAAAACCAGTTGATGGGTTTATAGAAGTGAGCTCTCTTGCGGTGGATGAACCATTGGAGCCTCTGGCACTTTGTGCACCGAATTCTGAGGAAATGTCTCTTTTGAAGGGAATTGACAAAGGAGATATAGTAAGTAGTGGTGCACCCCAGACTTCTAAAGATGGAAGGAACCCAAATGATTTTACACAGTCAAGAAGACCCAAGCTTGGCAGTAGAGAAGATTTACCCCTTGCACTTGGTGATTCTAAAGATGAAAGCATTGCTAGATCAAAAGGTGGTCTTCCAAATTATTCAGAGGGCTCTTCTTATGAAAGGCAGGTGCTCCATCATGGATCCAGCCTAAAAGGAGAAATAACGCAGGAACATAAGACATACTCAGAGAACAATTTCAGATCGGAAGCTTTTAGAGGAGACAGTGGTCCTTTCATAAGGGCTGAGGAGGCACCTGTTAGTGCAGATTTGAGCATGCAGGGAGGTATTACTGCTCATTCTGGTTCTCCATGGAGATCTTCATCACAAGGAGAACGCTCACATACAGTCTTGCATGATTGGAACGAGATTCCCGGTGATATTAAGTCAAGAACTCCTGATATGGGCTGGTCGCTAGGATCGAAAGATCTTAATAACGAATGGGAAAGTAGGGATGAGGCAAGATGGAAAACCAGTGATGATCCTGTTATAAGGAGGCAGCGATCGGGAATTCTAGATAGGGAACAAGAATTGAGACAACCTCAGCAGCTTTCTCCAGAGGAGCTTCAGCTTTATTATAAAGATCCTCAGGGTATAATTCAAGGTCCTTTCTCTGGGGCTGACATTATTGGCTGGTTTGAGGCTGGATATTTTGGCATAGATTTGCTAGTTCGCATAGCAGGTGCAAAAAATGATACGCCATTTTTGGCACTTGGTGATGTTATGCCTCATTTACGAGCTAAAGCTAGACCACCGCCTGGATTTACTGCACCTAAACCAGAGGTTGCAGATACATCAGGTAGGCCAAACTTTGGTAATGTTGGGATGATTCAAGCTGGTTTAAGTGAGATAGAGATAGCAAGAAATGATCCAAGGAATAAACAGGGCTCGACAACAGAAGCTCAGAATAGGTTTCTGGAGTCACTGATGTCTGGTAATCCGAGTGGCTTACCACTTCATAAGTTTCCTTTTTCGGAAGGTTTACAAGGATTTATGGGAAACAATCCTCACGGCTTGACTCATAGTGGATTGGATAATCTGTTGGCCAAGAGAATGGTTCTCGAACGACAGAGGTCTTTTCCTAATCCTTATCAATATTGGCCTGGGAGGGATGCTTCATCTGTGATGCCTAAGTCGGAGATTGTCCCAGATGCAAACCTCCTCTCTTCAGTGGCTGAAAATCCTAGTCAGCCTCCTCATACCCAAAATGCTGACCTCATGTCCATCCTTCAAGGATTAACTAACCGGTCATCATCTGACATAAATAATAGTACTGCTGGTCGGTCAACTTTTCCTGTCCAAGGTGGCTCAGAGCCACTCCAGAGTAATTTTCCCCCCCAAGCCCCACTCCAGAGTAACTTTCCTCCCCAAATCCCACTTGGGTTCCAACAGCAGAGGCTGCATCCTCAGAATCAACAATCTTTACTCTCTCAAGCTATTGATAGTTCAAGTATTTCAACGCAAGAGAAATTACTATCTTCTGGTTTATTACAAGATCCACAAGTATTGAGTATGTTGCAACAGCAGTATTTATTGCAGTTACATTCCCAGGCGCCTGTTCCAACACAACAAATGTCATTGTTGGATAATTTAATGTTGCTCAAGCAGCAGCAACAGAAACAGGAGGAGCAGCAAATTTTGTTAAGGCAACAACAGCAGTTGCTTTCCCAGGTTATGCCAGAGCATCACTCTCAACAGCATTTTACTGAGCCATCTTTTGGACAGATGCAGGCTTCTGCGATGCTGAAAGGGATAGATCCCTCCCGGCTTCAGTCGTCACAAGAAATGTTTCCAGTTGGTACAAATGTGCAGGTTGCTAATACGCAAAATGAACTTACTAGTAGTTATATGACTTTGCCTCCCCAAGGTAACCTAGATATCAGTCATAATGTTAGTGAGGGAGCATCCTCAGTACCTTTACCGCATCAAGTGCTTGGGAATATTACCCATCAAAGAAGTCGGGATGTTACTCCGGCGGCACCAATTTCTATTCAGCAGGAGTCGCTGCCAATGTCCACAAATGTTGAGAGCTCACCGTTGTTTGATGTGATGACCAAATCTAGAGAGGTGTCCCTTGCGCAGGAGTCCATACCTGATTCTGATTTTCATGTTGCTAAAACCCTGGAAGAGGCAGCTGAAAACGCTTTCATAGCTGACCGATCTGCTGGGGTAGCAATTTCTCAGGGTGTTGCAGATCCTCTGCGATCATTAGGAGCTTTTGAGAAAGATGTACCTGAGCATATCAATGATGTGAATGTTCAATCAGGCAATCAAATTGAAGAACAGCAGATTGAAAGGGAAAAATACAATGATGAGGCTCCTACAGTGGTTGAAGCAAAGAATGTTGAAGTAAGAGGGCAAAGAAAGATTTCTGAGAAGAAGTCCAAGAAGCAAAAATCTGCCAAGGCACAGTCTTCAAGTGACCAAGCAAAAGGAGCATCCAAGGCGCAGTCTGAAGCTGAAAAGCCTGTTGTTGGTGACGTAAAATTGGAGACGAGAGGCAACCGAGGCAGTAAGCCTGAAATTGTTACAGTGGAGGCTGTGGAATCCCGACAATCTGAAAATTTAGAGCCTGTGAAAGTTTCTGGAGATGATACAGAACCTCATGAAATCAGGGGTGATTCTAAGTTAGTTGAGTCTGTTTCTGGGCAAAGTACTCATACACAGATTGGCCAGCGAGCTTGGAAGCCTGCTCCTGGTTTTAAGGCAAAATCGTTACTAGAAATTCAACAGGAAGAACAGAGGAAGGCAGAGTCAGAAGTGATTATACCTGAGGTCACCATCAACTCCCCCAGTTTGTCAACTCCTTGGGCCGGGGTTGTAGCCAATTCAGAACCAAAAATATCTAGAGAAACTCCGGTAGATGCAGGTATTAATGACTTAAATGCTGGGAAGCCCAAAACTTCTCAAAACTCAAAGAGCAAGAAGAGCCCGCTACATGATTTATTAGCAGAGGAGGTTTTGGCCAAGTCCAGTGAAAGAGATGTTGAAATTCCTAATGGTGTGTCAACTCAGCATTCTTCACAAATTATGCCCACCCATTCAGAATCCGTAGATGACGATAACTTTATTGAGGCAAAAGACACCAAAAAGAGTCGCAAAAGGTCAGCAAAAGCGAAGGGTACTGGAACCAAGACCTCAATATCAGTTACTGCTGTAGATGTGCCTGTTAGTTCAAGCCCCACTGAGAAAGTCAAAAGCTCCCGTTCTGTACAGCAGGAAAAGGAAGTATTGCCTGCAATTCCATCAGGGCCTTCATTGGGAGATTTTGTTCCTTGGAAAGGAGAAACGGCTAACCCTGCTCCTTCTCCAGCATGGCTTACAGACTCCGGGAAGATTCCTAAACCCACATCTTTAAGAGATATCCAAAAGGAGCAGGAGAAGAGGGTTGCTGCTGCTCAGCACCAAAATCAGATTCCAACTCCAAAGAAATCACAGCCACCTCAAGTCACCCGCAATAGTGCTCCGTCATGGTCGCTTTCAGCATCATCTCCATCTAAAGCTGCATCTCCCATCGCAATTAATTCCCATGCATCTCAGTCAAGAAATAAAGTAGAAGATGACTTATTCTGGGGACCAATTGATCAAGCAAAGCAAGAAAATAAGCAGGCAGATTTTCCTCATCTTGCAAGCCAGGGCAGTCAGGGAGTGAAAAATACTCCTGTAAAAGGAACTTCAGCTGGTTCATTAGGCAGGCAGAAATCAGTGGGTGGAAAGTCAAATGAGCGATTACTTTCATCCTCACCGTCTCAGTCATCTACAAAAGGAAAAAGAGATGCCATGACCAAGCAATCAGAAGCCATGGGCTTCCAAGATTGGTGCAAGAGCGAGTGCGTTAGGCTTATTGGCACGAAAGATACGAGTTTCCTTGAGTTTTGCCTGAAGCAATCCAAATCGGAGGCGGAGTTGCTTCTGAAACAGAACCTAGGGTCGTATGATCCCGATCATGAGTTCATTGACAAATTTCTCAACTACAAGGAGTTGCTACCGGCTGATGTCCTTGAAATTGCCTTTCAAAAAGGGAATGACCAAAGAGGGGTCGCTGGGTTCAGCGGCGGAGATGTGAATTCATACAGTGCAGATGTTGGGGATGTGGACCAAGACGGGTTCTCCAAAGGGGGCGGCAAGAAGAAGGGGAAGAAAGGAAAGAAGGTTAGTCCGGCTGTCTTGGGATTTAACGTCGTGAGCAACCGCATCATGATGGGTGAGATCCAGACACTGGAAGATTAGGGAGGAGGATGATGAAGTTTAAAGATCAGAAGAGGCAGTTGTAAATAGGTTTTTGGCTTTTGGACTGTAAATGGCTTTTTACGTTCATCGGTTTAGGATTTTTCTTACCTGCCCCCTTTCTTTTATCCCATATTTTCTGGATCTTCCATCTTTTGTAGTAGTAGTAGTAAGTGCCAGCCAGCCAACGACAGCAGCAGTGCTATTTTTTTCTGCTCGAGCGATTTTGTGTAACCTTAAATTATACCATGGTAAGACTGCCTTCAATTATAAGGAAAATTAATGAAAAGGGCTTGAAAACCTTGAGTTTTAACGG

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G42950.1	1	GYF domain-containing protein
Prunus persica	Prupe.1G380700.2.p	1	GYF domain-containing protein
Prunus persica	Prupe.1G380700.3.p	1	GYF domain-containing protein
Prunus persica	Prupe.1G380700.1.p	0.991	GYF domain-containing protein
Pyrus communis	PCP024972.1	1	-
Pyrus x bretschneideri	Pbr006177.1	1	-
Rosa multiflora	Rmu_sc0008947.1_g000008.1	1	-
Rubus occidentalis	Ro02_G02382	1	-
Fragaria vesca	mrna15131.1	1	GYF domain-containing protein
Vitis vinifera	GSVIVT01009695001	1	GYF domain-containing protein
Solanum lycopersicum	Solyc04g080240.2.1	1	GYF domain-containing protein
Populus trichocarpa	Potri.002G262300.1	1	GYF domain-containing protein
Nicotiana benthamiana	Niben101Scf04831g00010.1	1	GYF domain-containing protein LENGTH=1714
Oryza sativa	LOC_Os07g04530.1	1	"GYF domain containing protein, putative, expressed"
Zea mays	GRMZM2G480002_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02213.12	GYF	582	632	3.60E-12

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.00791
SRR5252888	dormant buds	no	dormant buds(0 month)	31.5458
SRR5252889	dormant buds	no	dormant buds(0 month)	27.339
SRR5252886	dormant buds	no	dormant buds(1 months)	27.4889
SRR5252887	dormant buds	no	dormant buds(1 months)	23.9945
SRR5252884	dormant buds	no	dormant buds(2 months)	36.2919
SRR5252882	dormant buds	no	dormant buds(3 months)	35.1101
SRR5252883	dormant buds	no	dormant buds(3 months)	28.6938
SRR5252880	dormant buds	no	dormant buds(4 months)	38.2698
SRR5252881	dormant buds	no	dormant buds(4 months)	39.9082
SRR5252878	bud break	no	bud break	27.1863
SRR5252879	bud break	no	bud break	20.1399
SRR3744766	flower	no	mature	6.36061
SRR3744767	flower	no	mature	6.7989
SRR3744768	flower	no	mature	6.3698
SRR6308190	stigmas	no	open flowers	3.66353
SRR6308181	styles	no	open flowers	3.55485
SRR6308188	filaments	no	open flowers	4.63495
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	4.18387
SRR6308192	pollen	no	open flowers	11.6664
SRR6308191	petals	no	open flowers	4.17559
SRR6308194	sepals	no	open flowers	4.16914
SRR6308193	receptacles	no	open flowers	4.36852
SRR6308189	ovaries	no	open flowers	3.9694
SRR3384922	fruit	no	1 week after full bloom	2.25173
SRR3384921	fruit	no	2 week after full bloom	2.10367
SRR3384920	fruit	no	3 week after full bloom	2.05671
SRR3384919	fruit	no	4 week after full bloom	2.02992
SRR3384923	fruit	no	5 week after full bloom	2.40182
SRR3384918	fruit	no	6 week after full bloom	2.36137
SRR3384917	fruit	no	8 week after full bloom	2.57946
SRR3384916	fruit	no	10 week after full bloom	2.84712
SRR3384915	fruit	no	12 week after full bloom	2.73099
SRR3384914	fruit	no	14 week after full bloom	2.51422
SRR3384913	fruit	no	16 week after full bloom	1.85281
SRR3384912	fruit	no	18 week after full bloom	2.6453
SRR3384911	fruit	no	19 week after full bloom	1.81022
SRR3384910	fruit	no	20 week after full bloom	2.91282
SRR768128	whole fruit	no	25 days post anthesis	5.0011
SRR768129	whole fruit	no	35 days post anthesis	3.28806
SRR768130	whole fruit	no	60 days post anthesis	3.81422
SRR768131	whole fruit	no	87 days post anthesis	5.47284
SRR7343308	immature fruit flesh	no	immature	6.72205
SRR7343309	immature fruit flesh	no	immature	6.07091
SRR6320494	ripe fruit flesh	no	mature	4.72799
SRR5405143	ripe fruit peel	no	mature	7.99931
SRR6320572	ripe fruit peel	no	mature	5.47279
SRR7403504	fruit	uninfected	mature	3.97584
SRR7403506	fruit	uninfected	mature	4.69632
SRR7403507	fruit	uninfected	mature	4.63115
SRR7403500	fruit	infected with penicillium expansum	mature	3.29673
SRR7403501	fruit	infected with penicillium expansum	mature	3.14707
SRR7403508	fruit	infected with penicillium expansum	mature	3.19681
SRR7403502	fruit	infected with penicillium expansum	mature	4.28942
SRR7403503	fruit	infected with penicillium expansum	mature	4.80875
SRR7403505	fruit	infected with penicillium expansum	mature	3.97028
SRR1613973	Central seeds	no	20DAPF	4.82646
SRR1613974	Central seeds	no	20DAPF	5.50715
SRR1613975	Central seeds	no	20DAPF	4.61439
SRR1613976	Lateral seeds	no	20DAPF	6.22699
SRR1613977	Lateral seeds	no	20DAPF	4.98422
SRR1613978	Lateral seeds	no	20DAPF	5.64308
SRR3744786	stem	no	mature	7.67204
SRR3744787	stem	no	mature	7.96777
SRR3744772	stem	no	mature	8.61743
SRX765691	seedling shoot apex	no	4-6 week old seedling	9.32622
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	8.90726
SRR1089478	leaf	Virus-free	plantlets	10.0523
SRR1089477	leaf	ASGV-infected	plantlets	11.2742
SRR767660	leaf	uninfected	fully developed	4.26079
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	8.53015
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.36249
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.69836
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	4.30309
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.61117
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	5.12376
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.91676
SRR6308182	young leaf	no	immature leaves	6.84518
SRR3744769	leaf	no	mature	8.30975
SRR3744770	leaf	no	mature	9.38608
SRR3744771	leaf	no	mature	9.26812
SRR5405145	leaf	no	mature	8.04493
SRR6320561	leaf	no	mature	3.92252