Gene detail

Detail information of MD08G1034400 Annotation

Gene ID	Annotation
MD08G1034400	DUTP-PYROPHOSPHATASE-LIKE 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0247	dUTP metabolic process plant-type cell wall biogenesis polysaccharide biosynthetic process cell tip growth auxin polar transport pattern specification process multidimensional cell growth plant-type cell wall organization microsporocyte differentiation anthocyanin accumulation in tissues in response to UV light cell division control protein 7 [EC:2.7.11.1] dUTP pyrophosphatase [EC:3.6.1.23] p24 family protein delta-1 kinase [EC:2.7.1.-] regulation of meristem growth root hair elongation dUTP diphosphatase activity gametophyte development protein transmembrane transporter activity transmembrane receptor protein tyrosine kinase signaling pathway

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD08G1034400	mRNA	Chr08	2429903	2430916	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G46940.1	1	DUT1\|DUTP-PYROPHOSPHATASE-LIKE 1
Prunus persica	Prupe.1G380600.1.p	1	DUTP-PYROPHOSPHATASE-LIKE 1
Rubus occidentalis	Ro02_G02381	1	-
Fragaria vesca	mrna15132.1	1	DUTP-PYROPHOSPHATASE-LIKE 1
Solanum lycopersicum	Solyc01g100030.2.1	1	DUTP-PYROPHOSPHATASE-LIKE 1
Populus trichocarpa	Potri.002G261900.1	1	DUTP-PYROPHOSPHATASE-LIKE 1
Nicotiana benthamiana	Niben101Scf00369g21009.1	1	Deoxyuridine 5'-triphosphate nucleotidohydrolase
Oryza sativa	LOC_Os03g46640.1	1	"deoxyuridine 5-triphosphate nucleotidohydrolase, putative,expressed"
Zea mays	GRMZM2G044762_P01	1	DUTP-PYROPHOSPHATASE-LIKE 1

Gene Ontology

GO term	Description	Category
GO:0004170	dUTP diphosphatase activity	molecular_function
GO:0046080	dUTP metabolic process	biological_process

KEGG

KO	Description	Enzyme
K01520	dUTP pyrophosphatase	EC:3.6.1.23

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00692.15	dUTPase	86	213	1.80E-45

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	9.62063
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.143698
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0.268235
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	1.0708
SRR5252881	dormant buds	no	dormant buds(4 months)	1.63425
SRR5252878	bud break	no	bud break	7.99914
SRR5252879	bud break	no	bud break	9.60936
SRR3744766	flower	no	mature	0.115578
SRR3744767	flower	no	mature	0.254462
SRR3744768	flower	no	mature	0.259837
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.27593
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	1.23918
SRR6308189	ovaries	no	open flowers	2.15457
SRR3384922	fruit	no	1 week after full bloom	5.40056
SRR3384921	fruit	no	2 week after full bloom	5.16603
SRR3384920	fruit	no	3 week after full bloom	5.0276
SRR3384919	fruit	no	4 week after full bloom	2.65415
SRR3384923	fruit	no	5 week after full bloom	0.946527
SRR3384918	fruit	no	6 week after full bloom	0.936604
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0.658739
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0.125987
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	6.91209
SRR768129	whole fruit	no	35 days post anthesis	7.92052
SRR768130	whole fruit	no	60 days post anthesis	0.276656
SRR768131	whole fruit	no	87 days post anthesis	0.208241
SRR7343308	immature fruit flesh	no	immature	0.743724
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.371019
SRR1613974	Central seeds	no	20DAPF	0.407838
SRR1613975	Central seeds	no	20DAPF	0.449884
SRR1613976	Lateral seeds	no	20DAPF	1.14665
SRR1613977	Lateral seeds	no	20DAPF	0.295675
SRR1613978	Lateral seeds	no	20DAPF	0.420322
SRR3744786	stem	no	mature	0
SRR3744787	stem	no	mature	0.235757
SRR3744772	stem	no	mature	0.352684
SRX765691	seedling shoot apex	no	4-6 week old seedling	18.5796
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	18.2793
SRR1089478	leaf	Virus-free	plantlets	1.91157
SRR1089477	leaf	ASGV-infected	plantlets	2.03883
SRR767660	leaf	uninfected	fully developed	1.45206
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	21.7206
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.18576
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.18822
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.53438
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.23488
SRR6308182	young leaf	no	immature leaves	22.7279
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0.193105
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0.310481